BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39270.1
Length=3102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490704 jgi|Araly1|490704|fgenesh2_kg.7__137__AT4G39270.1 4205 0.0
> Ahg490704 jgi|Araly1|490704|fgenesh2_kg.7__137__AT4G39270.1
Length=2865
Score = 4205 bits (2277), Expect = 0.0
Identities = 2621/2787 (94%), Gaps = 23/2787 (1%)
Strand=Plus/Plus
Query 204 TCACAAAAAGAAAGTTTCCTTTATTGATCGGATTCGAAGGAAACCCaaaaaaaaaaGAGA 263
|||||||||||||||||||||| |||||| ||||||||||||| || |||||||| |||
Sbjct 5 TCACAAAAAGAAAGTTTCCTTTTTTGATCCGATTCGAAGGAAAACC--AAAAAAAA-AGA 61
Query 264 TTTGATTATTTCCATAAATCGCGAAGCTTTTTTCCAATTGAATCTTAGGCAATGAATGGC 323
|||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||
Sbjct 62 TTTGATTATTTCCATAAATCGCGAAGATTCTTTCTAATTGAATCTTAGGCGATGAATGGC 121
Query 324 -TTTAAGTTTTTCGAAGTACTAGTCGTCACCAGGGTTTAGAGAAACCATGGTGGTTCTGA 382
||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 122 TTTTAAGTTTTTCGAATTACTA---GTCATCAGGGTTTAGAGAAACCATGGTGGTTCTGA 178
Query 383 GGAAGACATCCTTGTTGGTCTTCTTCTTATTCCTCCTCTTGTTGTTAGAGTCAACGTTTG 442
||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||| |
Sbjct 179 AGAAGACATCCTTGCTGGTCTTCTTCTTCTTCTTTGTCTTGTTGTTAGAGTCAACGTTCG 238
Query 443 AGCAACAGACAAGTTCTCTGAATGAGAAATCGGCGCTTCTGCTGTTAAGGTCTTCTCTTG 502
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 239 AGCAACAGACAAGTTCTCTGGATGAGAAATCGGCGCTTCTGTTGTTAAGGTCTTCTCTTG 298
Query 503 GGTTACGAAGCAGAGATTGGCCTGTAAAAGGCAATCCTTGTCTGAACTGGAACGGCATCA 562
||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 299 GGTTAAGGAGCAGAGATTGGCCTGTGAAAGGCAATCCTTGTCTGAACTGGAACGGCAT-A 357
Query 563 -AATGTGATCAGAATGGTAGAGTAACTAAGATCAACATTTCAGGGTTCAGAAGGACAAGG 621
||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 358 GAATGTGATCAGAAAGGTAGAGTAATTAAGGTCAACATTTCAGGGTTCAGAAGGACTAGG 417
Query 622 ATTGGGAATCAAAACCCGGAATTCTCAGTTGGTTCTCTCGTCAATCTCACCCGTCTAGCT 681
||||||||| ||||||| |||||||||||| ||| || ||||||||||||||| | |||
Sbjct 418 CTTGGGAATCGAAACCCGCAATTCTCAGTTGATTCGCTTGTCAATCTCACCCGTTTGGCT 477
Query 682 TCCTTCAACGCCTCAAGGTTCTATCTTCCAGGTCCAATCCCGGCTTTGTTTGGATCGAGT 741
|||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||
Sbjct 478 TCCTTCAATGCCTCAAGGTTCTCTCTTCCAGGTCCAATCCCGGTTTTGTTCGGATCGAGT 537
Query 742 CTGTTGACTTTAGAGGTGTTGGACCTTAGCTCCTGTTCAATCACAGGAACCATCCCTGAA 801
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 CTGTTGACTTTAGAGGTGTTGGACCTTAGCTCTTGTTCAATCACAGGAACCATCCCTGAA 597
Query 802 AGTTTGACTCGGTTATCACATCTCAAAGTTCTTGATCTTTCAAAGAATGCGATCAATGGG 861
||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 598 AGTTTGACTCGGTTAACACACCTCAAAGTTCTTGATCTTTCAAAGAATGCAATCAATGGG 657
Query 862 GATATTCCTCTGTCTCTTACCTCTCTTCAGAATCTATCAATCCTTGATCTTTCCTCAAAC 921
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 658 GATATTCCTCTGTCTCTTACCTCTCTTCGGAATTTATCAATCCTTGATGTTTCCTCAAAC 717
Query 922 TCGGTGTTTGGTTCGATTCCTGCTAATATTGGGGCACTCTCAAAGCTCCAGCGTCTGAAT 981
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGGTGTTTGGTTTGATTCCTGCTAATATTGGGGCACTCTCAAAGCTCCAGCGTCTGAAT 777
Query 982 CTTTCGCGTAACACCTTG-ACTTCTTCAATACCTCCATCACTCGGAGACCTCT-CTGTTT 1039
||||||| |||||||||| | |||||||||||||||||||||||||||||| | ||| ||
Sbjct 778 CTTTCGCATAACACCTTGTA-TTCTTCAATACCTCCATCACTCGGAGACCT-TACTGCTT 835
Query 1040 TAATTGACCTTGATCTCAGCTTCAACGGA-ATGTCAGGTTCGGTTCCATCAGATTTGAAA 1098
|| | ||||||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 836 TAGTCGACCTTGATCTCAGCTTCAAC-GACCTGTCAGGTTCGGTTCCATCCGATTTGAAA 894
Query 1099 GGGCTAAGGAACTTGCAGACA-TTGGTAATTGCGGGAAATCGCCTTTCAGGATCCCTACC 1157
|||||||||||||| |||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 895 GGGCTAAGGAACTTACAGACACTT-GTAATTGCGGGAAATAGCCTTTCAGGATCCCTACC 953
Query 1158 TCCTGATCTGTTTAGTTTGCTGAGTAAACTTCAGATCATTGACTTCAGAGGCAGTGGTTT 1217
|||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 954 TCCTGATCTGTTCAGTTTCCTGAGTAAACTTCATATTGTTGACTTCAGAGGCAGTGGTTT 1013
Query 1218 CATAGGCGCTTTACCGTCCAGGTTATGGTCGTTACCGGAGCTCAAGTTTCTAGATATTTC 1277
||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct 1014 CATAGGCGCTTTACCGTCCAGGTTATGGTTGTTACCGGAGCTGAAGTTTCTAGATCTTTC 1073
Query 1278 TGGAAATCACTTCTCTGACATGCTGCCTAATACCACTGTCAGTTTTGATTCTACTGTCTC 1337
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGGAAATCACTTCTCTGACTTGCTGCCTAATACCACTGTCAGTTTTGATTCTACTGTCTC 1133
Query 1338 CATGCTTAACATATCCGGGAACATGTTTTACGGCAATCTCACACTTTTACTGACAAGGTT 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1134 CATGCTTAACATATCCGGGAACATGTTTTACGGCAATCTCACACTTTTACTGAGAAGGTT 1193
Query 1398 CCAAGTTGTTGACCTGTCAGAAAACTATTTTGAAGGTAAAATTCCTGACTTTGTGCCAAC 1457
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1194 CCAAGTTGTTGATCTGTCAGAAAACTATTTTGAAGGTAAAGTTCCTGACTTTGTGCCAAC 1253
Query 1458 CAGA-GCTTCATTGAGCAACAATTGTCTTCAGGGCCCAGAGAAGCAGCGGAAGTTGTCGG 1516
|| | |||||||||||||||||||||||||||||||||| ||| |||||||| | |||||
Sbjct 1254 CA-ATGCTTCATTGAGCAACAATTGTCTTCAGGGCCCAGCGAACCAGCGGAAATCGTCGG 1312
Query 1517 ATTGCACTTTGTTTTATTCAAAAAAGGGCTTAACTTTCAACAATTTCGGACAACATGAAG 1576
||||| ||| |||||||| || |||||||||||||||||||||| ||||| | |||||
Sbjct 1313 ATTGCGCTTCCTTTTATTCCAACAAGGGCTTAACTTTCAACAATTCCGGACCTCCTGAAG 1372
Query 1577 AGAAGAAGAGTTCTAAAACTTCCTGGTTAAGCCACACGAAAATAGTTATACTTGCTGCAG 1636
| ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1373 AAAAGAAGAGTCCTAAATCTTCCTGGTTAAGCCAAACGAAAATAGTTATACTTGCTGCAG 1432
Query 1637 TTGGAGGGTCTATATTGCTTATGCTCATTCTCATAGTGTTACCAATAACAGTGAGTTTCT 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TTGGAGGGTCTATATTGCTTATGCTCATTCTCATAGTGTTACCAATAACAGTGAGTTTCT 1492
Query 1697 GTGTCCGTCGAAGAAACAGATCATCAACAAGTAATCATCCTAGAGGAAGACACAACGGTG 1756
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1493 GTGTCCGTCGAAGAAACAGATCATCAACAAGTAATCATCCTAGAGGGAGACACAACGGAG 1552
Query 1757 TTGGCCCATTACCTCCTGATGAAACACTTCCCTCAAGAGGAGGAGTCTCTATAAACTTTG 1816
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TTGGCCCATTGCCTCCTGATGAAACACTTCCCTCAAGAGGAGGAGTCTCTATAAACTTTG 1612
Query 1817 GGAGTCTTGGATCATCATTTACCTATCAGCAGTTGCTCAATGCCACCAAGGAGTTCAGTG 1876
||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 1613 GGAGTCTTGGATCATCATTTAACTATCAGCAGCTGCTCAATGCCACCAAGGATTTCAGTG 1672
Query 1877 ATTCAAACCTGATCAAGAAAGGACAATCTGGGGATCTTTTCAAGGGAGTTCTAGAAAACG 1936
|||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1673 ATTCGAACCTGATCAAGAAAGGACATTCGGGGGATCTTTTCAAGGGCGTTCTAGAAAACG 1732
Query 1937 GAGTTCAGATCGTTGTGAAAAGAATCAGCTTGGAATCTACAAAGAACAACGAAGCTTATC 1996
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1733 GAGTTCAAATCGTTGTAAAAAGAATCAGCTTGGAATCTACAAAGAACAACGAAGCATATC 1792
Query 1997 TAACCGAGTTGGATTTCTTCAGCCGGTTTGCGCATCCGAGAATAATCCCATTCGTAGGGA 2056
| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1793 TTACCGAGTTGGATTTCTTCAGCCGGTTTGCGCATCCAAGAATAGTCCCATTCGTAGGGA 1852
Query 2057 AGAGCTTAGAGAGCGCAACTCATAAGTTCTTGGTATACAAGTACATGCTGAATAGGGATT 2116
|||||||||||||| |||| |||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1853 AGAGCTTAGAGAGCACAACCCATAAGTTCTTGGTGTACAAATACATGCTGAATAGAGATT 1912
Query 2117 TACCAAGCTCATTGTTCTATAAATCCAATTCCCTAGTTGACAACGGATTGAGATCTCTCG 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 TACCAAGCTCATTGTTCTATAAATCCAATTCCCTAGTTGACAACGGATTGAGATCTCTCG 1972
Query 2177 ATTGGATCACCAGACTGAAAATAGCATTGGGAGTAGCAGAGGGACTTGCTTACCTGCACC 2236
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1973 ATTGGATCACCAGACTGAAAATAGCACTGGGAGTAGCAGAGGGACTTGCTTATCTGCACC 2032
Query 2237 ATGATTGCTCACCATCCGTCGTCCACAGGGATATTCAAGCAAGTAGCATTCTCTTGGATG 2296
|||||||||||||||| ||||||||||||||| ||||||| || |||||||| |||||||
Sbjct 2033 ATGATTGCTCACCATCTGTCGTCCACAGGGATGTTCAAGCGAGCAGCATTCTGTTGGATG 2092
Query 2297 ATAAGTTTGAAGTTAGGCTTGGAAGCTTTAGCAAAGCTTGTCATCAAGAAAACAATGGCC 2356
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2093 ATAAGTTTGAAGTTAGGCTTGGGAGCTTTAGCAAAGCTTGCCATCAAGAAAACAATGGCC 2152
Query 2357 GTCCACGGAAAATAGCCCGATTGCTCAGACTATCCCAGTCTTCTCAAGAAAGTGTTCCTG 2416
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2153 GTCCACGGAAAATAGCCCGGTTGCTCAGACTATCCCAATCTTCTCAAGAAAGTGTTCCTG 2212
Query 2417 GGTCTGCAGCTACAGCAACATGTGCCTACGATGTGTACTGCTTCGGCAAGATACTTCTGG 2476
||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct 2213 GGTCTCCAGCTACAGCAACATGTGCATACGATGTGTACTGCTTCGGCAAAATACTTGTGG 2272
Query 2477 AGCTTATCACAGGGAAACTCGGAATCAGCTCATGTAAAGAAACCCAATTCaaaaaaaTCC 2536
||||||||||||| |||||||||||||||||||| |||| ||||| ||||| |||||||
Sbjct 2273 AGCTTATCACAGGAAAACTCGGAATCAGCTCATGCCAAGATACCCAGTTCAAGAAAATCC 2332
Query 2537 TAACCGAGATCATGCCTTACATTTCATCGCAAGAGAAAGAACCCGTAATGAACATTCTAG 2596
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 2333 TAACCGAGATCATGCCTTACATTTCATCACAACAGAAAGAACCCGTAATGAACATTCTAG 2392
Query 2597 ACCAATCTCTTCTGGTCGACGAAGACCTCTTAGAAGAAGTCTGGGCAATGGCAATCGTCG 2656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 ACCAATCTCTTCTGGTCGACGAAGACCTCTTAGAAGAAGTCTGGGCAATGGCAATCGTCG 2452
Query 2657 CTAGATCTTGTCTTAACCCAAAACCAACGAGACGGCCGCTTATGAGACACATAGTACAAG 2716
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 CAAGATCTTGTCTCAACCCTAAACCAACGAGACGGCCGCTTATGAGACACATAGTACAAG 2512
Query 2717 CCTTGGAGAATCCACTGAGAGTTGTGAGAGAAGACAGCAGCGAATCTGAGAGATTCCGTA 2776
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2513 CCCTCGAGAATCCACTGAGAGTCGTGAGAGAAGACAGCAGCGAATCTGAGAGATTCCGTA 2572
Query 2777 CGACTGGATCTTCGAGAGGATCTTCGAGTAGCGGTCGAATATTTGGTAGTTGGAGACAGA 2836
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2573 CGACGGGATCTTCGAGAGGATCTTCGAGTAGCGGTCGAATTTTTGGTAGTTGGAGACAAA 2632
Query 2837 GCGTGTCTGATCCTGTCGCAGCGGGAACAAGTAGCCTTCTGTCTCAGGCGGAGGGTTTAG 2896
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 2633 GCGTGTCTGATCCTGTCGCGGCGGGAACGAGTAGCCTTCTGTCTCAAGCGGAGGGTTTAG 2692
Query 2897 CGACTGGATCGTC-A-GCGAGAGGAAGTAGCCGTGGCGCGTCGAGTCGACGGAGTATGAA 2954
|||| || ||||| | |||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 2693 CGACGGGCTCGTCCACGCGAGA--AAGTAGCCGTGGCGCGTCGAGTCGACGAAGTATGAA 2750
Query 2955 AGATGTATAGAAAGAAAGacacacaca 2981
|||||||||||||| ||||||||||||
Sbjct 2751 AGATGTATAGAAAGGAAGACACACACA 2777
Score = 135 bits (73), Expect = 1e-30
Identities = 87/93 (94%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 3010 caatttttaattattttttaTGTGTGGTTATGATTTGATCTCTTGTTGATAAAAAATTCC 3069
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2776 CAATTTTTAATT-TTTTTT-T-TGTGGTTATGATTTGATCTCTTGTTGATAAAAAATTCC 2832
Query 3070 CGTTAATTTATAATATTTTTCGATGATCAAACC 3102
| | |||||||||| ||||||||||||||||||
Sbjct 2833 CATAAATTTATAATCTTTTTCGATGATCAAACC 2865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117165593620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5