BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39280.1
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943901 jgi|Araly1|943901|scaffold_700130.1 2503 0.0
Ahg889986 jgi|Araly1|889986|Al_scaffold_0007_1972 1570 0.0
Ahg320017 jgi|Araly1|320017|fgenesh1_pm.C_scaffold_4000074 1275 0.0
> Ahg943901 jgi|Araly1|943901|scaffold_700130.1
Length=1499
Score = 2503 bits (1355), Expect = 0.0
Identities = 1447/1492 (97%), Gaps = 3/1492 (0%)
Strand=Plus/Plus
Query 53 ACTTCAAGAGATTACTT-ATGGCGGAAGAGGCGATACTAGGGTTCCTTCAGAACAATGAA 111
|||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3 ACTTGAAGAGATTTTTTAATGGCGGAAGAGGCGATACTAGGGTTCCTGCAGAACAATGAA 62
Query 112 CAGATCACTGATTCGGGTCAATTCTCTGCCGAGTTCAACATCGACCACAACGAACTCGTC 171
|||||||| |||||||||||||| ||||| || |||||| |||||||||||||| |||||
Sbjct 63 CAGATCACGGATTCGGGTCAATTTTCTGCTGAATTCAACCTCGACCACAACGAAGTCGTC 122
Query 172 AATGTCATCAAAAGTCTCCATGGTTTTCGTTACATCGATGTTCAGGACATTAAAAAGGAG 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AATGTCATCAAAAGTCTCCATGGTTTTCGTTACATCGATGTTCAGGACATTAAAAAGGAG 182
Query 232 ACATGGATTCTGACTGATGAAGGGAAGAAATATGCGGCAGAAGGGTCACCAGAGGTTCAA 291
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 183 ACATGGGTTCTGACTGATGAAGGGAAGAAATATGCAGCAGAAGGGTCACCAGAGGTGCAA 242
Query 292 CTTTTCTTAGCTGTTCCTGAAGAAGGCAGCATATCAAAAGATGAGCTCCAGAAAAAGTTA 351
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 243 CTTTTCTTAGCTGTGCCTGAAGAAGGCAGCATATCAAAAGATGAGCTCCAGAAAAAGCTA 302
Query 352 GCTCCTGCAGTCTTCAAGATCGGCTGTTCTCAAGCTGGAAAAAACAAGTGGGTGGAAATG 411
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 303 GCTCCTTCAGTCTTCAAGATCGGCTGTTCACAAGCTGGTAAAAACAAGTGGGTGGAAATG 362
Query 412 GGAAAGCAAGTCTCGAGGAAGGTTAAAGATGTAGAAGATAAAGTGAAAGGCCAGCTTTTA 471
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 363 GGAAAGCAAGTTTCGAGGAAGGTTAAACATGTAGAAGATAAAGTGAAAGGCCAGCTTTTA 422
Query 472 CAAATACAACAAGGGAAGGAATTTGACAAAGAAAGTATCAATTCTCTTAAAGCCAGAAAA 531
||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 423 CAAATACAAGAAGGGAAGGAATCTGACAAAGACAGTATCAATTCTCTTAAAGCCAGAAAA 482
Query 532 CTCATAGTACCACAGATATGGAAGGGGTATTCCGTAAAGAAAGGTCCTAATTATGCTCCC 591
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CTTATCGTACCACAGATATGGAAGGGGTATTCCGTAAAGAAAGGTCCTAATTATGCTCCC 542
Query 592 GAGAGAAAGAAAGTGGCTACCGATTTGACTCGAGAAAATCTTCAAAACTGGAAAGAGTTA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GAGAGAAAGAAAGTGGCTACCGATTTGACTCGAGAAAATCTTCAAAACTGGAAAGAGTTA 602
Query 652 GAGTTTAAGGAGTATAACTTCAAAGCTAAAGGAGCGCCTGTTGACGCTGGGCATCTTCAC 711
|||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||
Sbjct 603 GAGTTTAAGGAGTATAACTTTGAAGCTAAAGGAGCGCCTCTTGAGGCTGGGCATCTTCAC 662
Query 712 GCTCTTCTCAAGGTGCGGAAGCAGTTTAAAGACATATTTGTTCAGATGGGGTTTGAGGAG 771
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GCCCTTCTCAAGGTGCGGAAGCAGTTTAAAGACATATTTGTTCAGATGGGGTTTGAGGAG 722
Query 772 ATGCCAACAAACAACTATGTGGAGAGCAGCTTCTGGAATTTTGATGCTTTGTTCCAGCCT 831
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 ATGCCAACAAACAACTTTGTGGAGAGCAGCTTCTGGAATTTTGATGCTTTGTTCCAGCCT 782
Query 832 CAGCAGCACCCTGCTCGTGATTCTCATGACACCTTCTTTCTAAAAGTTCCCTCTACTACA 891
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 783 CAGCAGCACCCTGCTCGTGATTCTCATGATACCTTCTTTCTAAAAGTTCCTTCTACTACA 842
Query 892 AGAACACTTCCGGAAGATTATGTTGAGAGGGTGAAACGTGTTCATGAGTCTGGTGGTTAT 951
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AGGACACTTCCGGAAGATTATGTTGAGAGGGTGAAACGTGTTCATGAGTCTGGTGGTTAT 902
Query 952 GGATCAAGAGGGTATAATTATGATTGGAAAAGAGAAGAAGCAAACAAGAATCTTCTTCGT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GGATCAAGAGGGTATAATTATGATTGGAAAAGAGAAGAAGCAAACAAGAATCTTCTTCGT 962
Query 1012 ACCCACACAACGGCTGTCTCATCTAGGATGCTTTATGCACTAGCACAGAAACCTTTTGTG 1071
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACTCACACAACGGCTGTCTCATCTAGGATGCTTTATGCACTAGCACAGAAACCTTTTGTG 1022
Query 1072 CCCAAGAAGTACTTTTCGATTGACCGTGTCTTCAGAAACGAGGCTGTTGATCGGACCCAC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CCCAAGAAGTACTTTTCGATTGACCGTGTCTTCAGAAACGAGGCTGTTGATCGGACCCAC 1082
Query 1132 CTTGCAGAGTTCCATCAAATTGAAGGTTTGATATGTGATCGGGGCCTTACACTTGGAGAC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CTTGCAGAGTTCCATCAAATTGAAGGTTTGATATGTGATCGGGGCCTTACACTTGGAGAC 1142
Query 1192 CTGATTGGTGTATTAGAAGACTTCTTCTCACGCTTAGGGATGTCGAAATTGCGTTTCAAG 1251
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1143 CTGATTGGTGTATTAAAAGACTTCTTCTCACGCTTAGGGATGTCGAAACTGCGTTTCAAG 1202
Query 1252 CCAGCTTACAACCCTTACACAGAGCCAAGCATGGAGATTTTCAGCTACCATGAAGGTTTA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CCAGCTTACAACCCTTACACAGAGCCAAGCATGGAGATTTTCAGCTACCATGAAGGTTTA 1262
Query 1312 GGGAAGTGGGTGGAGATTGGAAACTCTGGGATGTTCAGACCCGAAATGCTTCTACCGATG 1371
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1263 GGGAAGTGGGTGGAGATTGGAAACTCTGGAATGTTCAGACCCGAAATGCTTCTACCAATG 1322
Query 1372 GGTCTCCCCGAGGATGTTAGAGTCATCGCTTGGGGTCTCTCTCTTGAAAGACCAACAATG 1431
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1323 GGTCTCCCCGAGGATGTTAGAGTCATCGCTTGGGGTCTTTCTCTTGAAAGACCAACAATG 1382
Query 1432 ATATTATACGGTATCGACAACATCCGAGATTTGTTTGGACACAAGGTGGATCTCGATCTT 1491
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 ATATTATATGGTATCGACAACATCCGAGATTTGTTTGGACACAAGGTGGATCTCGATCTT 1442
Query 1492 ATTAAACGGAATCCGATCTGCCGAATTGGAATCTAAGTGATATATTTTGATT 1543
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 1443 ATTAAACGGAATCCGATCTGCCGAATTGGAATCTGAGTGATAT-TTT-GATT 1492
> Ahg889986 jgi|Araly1|889986|Al_scaffold_0007_1972
Length=1440
Score = 1570 bits (850), Expect = 0.0
Identities = 1281/1480 (87%), Gaps = 66/1480 (4%)
Strand=Plus/Plus
Query 70 ATGGC-GGAAGAGGCGATACTAGGGTTCCTTCAGAACAATGAACAGATCACTGATTCGGG 128
||||| | |||| |||||||| ||||| || ||||||||||| |||||| | ||||||||
Sbjct 1 ATGGCAGAAAGA-GCGATACTTGGGTTTCTGCAGAACAATGAGCAGATCCCGGATTCGGG 59
Query 129 TCAATTCTCTGCCGAGTTCAACATCGACCAC-AACGAACTCGTCAATGTCATCAAAAGTC 187
|| ||| ||||||||| |||| | |||||| | | || || |||||||||| ||| |
Sbjct 60 TCTATTTTCTGCCGAGCACAACCTTGACCACGATC-AAGTCAAGAATGTCATCAGAAGGC 118
Query 188 TCCATGGTTTTCGTTACATCGATGTTCAGGACATTAAAAAGGA-GACATGGATTCTGACT 246
|||| ||||||||||||||||||| |||||||||| | |||| ||||||| || |||||
Sbjct 119 TCCAGGGTTTTCGTTACATCGATGCTCAGGACATT-ACTAGGACGACATGGGTTTTGACT 177
Query 247 GATGAAGGGAAGAAATATGCGGCAGAAGGGTCACCAGAGGTTCAACTTTTCTTAGCTGTT 306
|| |||||||| |||||||| ||| |||| ||||||||||| |||||||||||||||||
Sbjct 178 GAAGAAGGGAACAAATATGCTGCACAAGGATCACCAGAGGTACAACTTTTCTTAGCTGTG 237
Query 307 CCTGAAGAAGGCAGCATATCAAAAGATGAGCTCCAGAAAAAGTTAGCTCCTGCAGTC--T 364
|| |||||||| |||||||| || | ||||||| ||| || | || |
Sbjct 238 CCAGAAGAAGGTAGCATATC--------AG-T---GAAAAAGCTAG---GTG-AATCGAT 281
Query 365 TCA-AGA-TCGGCT-GTTCTCAAGCTGGAA-AAAACAAGTGGGTGGAAAT-GG-G-AAAG 417
| | ||| | | || | | | ||| || ||||||||||| ||||| | || | ||||
Sbjct 282 TGACAGATTTGCCTGGAAAT-ATGCT-AAAGAAAACAAGTGGCTGGAATTGGGAGAAAAG 339
Query 418 CAAGTCTCGAGGAAGGTTAAAGATGTAGAAGATAAAGTGAAAGGC-CAGCTTTTACAAAT 476
||||| |||||||||||| || ||||||| |||| |||| || || | ||||||||| ||
Sbjct 340 CAAGTATCGAGGAAGGTTCAACATGTAGATGATATAGTGCAA-GCTCTGCTTTTACAGAT 398
Query 477 ACAACAAGGGAAGGAATTTGACAAAGAAAGTATCAATTCTCTTAAAGC-CAG--AAAA-C 532
|||| ||||||||||| ||||| |||| |||||| ||| ||| ||| | ||| |||| |
Sbjct 399 ACAAGAAGGGAAGGAAATTGACGAAGACAGTATCGATTTTCTCAAA-CGCAGAAAAAATC 457
Query 533 TCATAGTACCACAGAT--ATGGAAGGGGTA---TTCCGTAAAGAAAGGTCCTAATTATGC 587
||||| | || |||| |||||| ||||| |||| |||||||||||||||||||| |
Sbjct 458 TCATA-AAACA-AGATAAATGGAATGGGTATTCTTCCATAAAGAAAGGTCCTAATTATTC 515
Query 588 TCCCGAGAGAAAGAAAGTGGCTACCGATTTGACTCGAGAAAATCTTCAAAACTGGAAAGA 647
||||||||||||||| ||| | |||||||||||||| |||||||| ||||||||||||||
Sbjct 516 TCCCGAGAGAAAGAAGGTGTCCACCGATTTGACTCGGGAAAATCTACAAAACTGGAAAGA 575
Query 648 GTTAGAGTTTAAGGAGTATAACTTCAAAGCTAAAGGAGCGCCTGTTGACGCTGGGCATCT 707
| |||| || ||||||||||||||||| |||||||||||||||||||| ||||| | |||
Sbjct 576 GCTAGAATTCAAGGAGTATAACTTCAATGCTAAAGGAGCGCCTGTTGAGGCTGGCCTTCT 635
Query 708 TCACGCTCTTCTCAAGGTGCGGAAGCAGTTTAAAGACATATTTGTTCAGATGGGGTTTGA 767
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 TCACCCTCTTCTCAAGGTGCGGAAGCAGTTTAAAGACATATTTGTTCAGATGGGGTTTGA 695
Query 768 GGAGATGCCAACAAACAACTATGTGGAGAGCAGCTTCTGGAATTTTGATGCTTTGTTCCA 827
||| ||||||||||| || | |||||||||||||||||||||||||||||| ||||||||
Sbjct 696 GGAAATGCCAACAAATAATTTTGTGGAGAGCAGCTTCTGGAATTTTGATGCATTGTTCCA 755
Query 828 GCCTCAGCAGCACCCTGCTCGTGATTCTCATGACACCTTCTTTCTAAAAGTTCCCTCTAC 887
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||
Sbjct 756 GCCTCAGCAGCACCCTGCTCGTGATTCTCACGACACCTTCTTTCTAAAAGCTCCTTGTAC 815
Query 888 TACAAGAACACTTCCGGAAGATTATGTTGAGAGGGTGAAACGTGTTCATGAGTCTGGTGG 947
||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 816 GACAAGGACACTTCCAGAAGATTATGTTGAGAGGGTGAAATGTGTTCATGAGTCTGGTGG 875
Query 948 TTATGGATCAAGAGGGTATAATTATGATTGGAAAAGAGAAGAAGCAAACAAGAATCTTCT 1007
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 876 ATATGGATCAAGAGGGTATAATTGTGATTGGAAGAGAGAAGAAGCAAACAAGAATCTTCT 935
Query 1008 TCGTACCCACACAACGGCTGTCTCATCTAGGATGCTTTATGCACTAGCACAGAAACCTTT 1067
|| || |||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 936 CCGAACTCACACAACAGCCGTCTCTTCTAGGATGCTTTATGCACTAGCACAGAAACCTTT 995
Query 1068 TGTGCCCAAGAAGTACTTTTCGATTGACCGTGTCTTCAGAAACGAGGCTGTTGATCGGAC 1127
||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 996 TGTCCCCAAGAAGTATTTTTCGATTGATCGTGTGTTCAGAAACGAGGCTGTTGATCGGAC 1055
Query 1128 CCACCTTGCAGAGTTCCATCAAATTGAAGGTTTGATATGTGATCGGGGCCTTACACTTGG 1187
||| || ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 1056 CCATCTGGCAGAGTTCCATCAAATGGAAGGTTTGATATGTGACCGGGGCCTTACA-TTGG 1114
Query 1188 -AGACCTGATTGGTGTATTAGAAGACTTCTTCTCACGCTTAGGGATGTCGAAATTGCGTT 1246
|||||||||||||||| || ||||||||||||||||| ||| || || | ||
Sbjct 1115 GAGACCTGATTGGTGTACTAAAAGACTTCTTCTCACGCCTAGC--TG-CG-----G--TT 1164
Query 1247 TCAAGCCAGCTTACAACCCTTACACAGAGCCAAGCATGGAGATTTTCAGCTACCATGAAG 1306
||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 1165 -CAAGCCAGCGTACAACCCTTACACAGAACCA----TGGAGATCTTCAGCTACCATGAAA 1219
Query 1307 GTTTAGGGAAGTGGGTGGAGATTGGAAACTCTGGGATGTTCAGACCCGAAATGCTTCTAC 1366
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1220 AATTAAAGAAGTGGGTGGAGATTGGAAACTCTGGAATGTTCAGACCCGAAATGCTTCTAC 1279
Query 1367 CGATGGGTCTCCCCGAGGATGTTAGAGTCATCGCTTGGGGTCTCTC-TCTTGAAAGACCA 1425
||||||||||||| |||||||| ||||||| ||||||||||| | |||||||||||||
Sbjct 1280 CGATGGGTCTCCCTGAGGATGTCCGAGTCATAGCTTGGGGTCT-TGGTCTTGAAAGACCA 1338
Query 1426 ACAATGATATTATACGGTATCGACAACATCCGAGATTTGTTTGGACACAAGGTGGATCTC 1485
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 ACAATGATTTTATATGGTATCGACAACATCCGAGATTTGTTTGGACACAAGGTGGATCTC 1398
Query 1486 GATCTTATTAAACGGAATCCGATCTGCCGAATTGGAATCT 1525
| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1399 GGTCTCATTAAACGGAATCCGATCTGCCGAATTGGAATCT 1438
> Ahg320017 jgi|Araly1|320017|fgenesh1_pm.C_scaffold_4000074
Length=1473
Score = 1275 bits (690), Expect = 0.0
Identities = 1256/1515 (83%), Gaps = 95/1515 (6%)
Strand=Plus/Plus
Query 70 ATGGCGGAAGAGGCGATACTAGGGT-TCCTTCAGAACAATGAACAGATCACTGATTCGGG 128
|||||||| |||||||| ||||||| | || | | |||| ||| ||||||| ||||| ||
Sbjct 1 ATGGCGGAGGAGGCGATTCTAGGGTAT-CTGCTGGACAACGAAGAGATCACGGATTCCGG 59
Query 129 TCAATTCTCTGCCGAG-TTCAACATCGACCACAACGAACTCGTCAATGTCATCAA-AAGT 186
||||||||| | ||| | ||| | ||||| ||||| |||||||||||||||| | ||
Sbjct 60 TCAATTCTCCGATGAGCAT-AACCTTAACCACGACGAAGTCGTCAATGTCATCAAGAGGT 118
Query 187 CTCCATGGTTTTCGTTACATCGATGTTCAGGACATTAAAAAGGAG-A-CAT-GGATTCTG 243
| |||| ||| |||||||||||| ||||| ||||| ||| || | | ||| || |||||
Sbjct 119 -TACATGCTTTCCGTTACATCGATTTTCAGAACATT-AAACGG-GTATCATCGG-TTCTG 174
Query 244 ACTGATGAAGGGAAGAAATATGCGGCAGAAGGGTCACCAGAGGTTCAACT-TTTCTTAGC 302
|||||||||||||||||||||||||| ||||| || |||||||| | | | |||||| ||
Sbjct 175 ACTGATGAAGGGAAGAAATATGCGGCGGAAGGATCGCCAGAGGTAC-ATTATTTCTTGGC 233
Query 303 TGTTCCTGAAGAAGGCAGCATATCAAAAGATGAGCTCCAGAAAAAG-TTAGCTCCTGCAG 361
|||||||| |||||| |||||||| || || || |||||||||||| || ||||| |||
Sbjct 234 TGTTCCTGCAGAAGGTAGCATATCCAAGGAAGAACTCCAGAAAAAGCTT-TCTCCTTCAG 292
Query 362 --T---CTTC-AAGA--TC-G---GCTG--TT--CTC-A---A-GCTG-GAAAAAACAAG 399
| || |||| || | | | || ||| | | |||| | |||||||||
Sbjct 293 ATTGGAAGTCTAAGACTTCTGTATTCAGAATTGGCTCTATGTACGCTGTG-AAAAACAAG 351
Query 400 TGGGTGGAAATGGGAAAGCAAGTCTCGAGGAAGGTTAAAGATGTAGAAGATAAAGTGAAA 459
||||||||| ||||||||||||||| ||||||||| || |||| |||||||||||| ||
Sbjct 352 TGGGTGGAAGGGGGAAAGCAAGTCTCTAGGAAGGTTCAACATGTTGAAGATAAAGTG-AA 410
Query 460 G-GCCAGCTTTTACAAATACAACAAGGGAA-GGAATTTGACAAAGAAAGTATCAA-T-TC 515
| | ||||||||||||||| || |||| |||| ||||| |||||||| |||| | ||
Sbjct 411 GAACTTGCTTTTACAAATACAGGAA-GGAATGGAACTTGACGAAGAAAGTCTCAATTATC 469
Query 516 TC-TTAAAGCCAGAAAACTCATAGTACCACAGATATGGAAGGGGTATTCCGTAAAGAAAG 574
|| ||| |||||| || ||| | | || |||||||||| |||||||| |||||||
Sbjct 470 TCAAAAAAACCAGAAGCCTTGTAGAAGAAAAGGTATGGAAGGGCTATTCCGTGAAGAAAG 529
Query 575 GTCCTAATTATGCTCCCGAGAGAAAGAAAGTGGCTACCGATTTGACTCGAGAAAATCTTC 634
||||||||||||||||| | |||| || | || ||||| ||| | |||||||||| |
Sbjct 530 GTCCTAATTATGCTCCCAAAAGAATGAGTTTTGCCACCGACTTGTCACGAGAAAATC-T- 587
Query 635 AAAACTGGAAAGAGTTAGAGTTTAAGGAGTATAACTTCAAAGCTAAAGGAGC-GCCTGTT 693
|| | | || |||||||||||||| |||||| || | |||||||
Sbjct 588 ---AC-----------A-A----AA-GAGTATAACTTCAATGCTAAATGA-CAGCCTGTT 626
Query 694 GACGCTGGGCATCTTCACGCTCTTCTCAAGG--------TG--CGGAAGCAGTTTAAAGA 743
|| ||||| ||||||||| | |||||||||| || ||||||||||| |||||
Sbjct 627 GATGCTGGACATCTTCACCCCCTTCTCAAGGTACTCAAATGTACGGAAGCAGTTCAAAGA 686
Query 744 CATATTT-GTTCAGATGGGGTTTGAGGAGATGCCAACAAACAACTATGTGGAGAGCAGCT 802
||||||| | ||||||||| ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 687 CATATTTCG-TCAGATGGGATTTGAAGAGATGCCAACAAACAACTTTGTGGAGAGCAGCT 745
Query 803 TCTGGAATTTTGATGCTTTGTTCCAGCCTCAGCAGCACCCTGCTCGTGATTCTCATGACA 862
|||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 746 TCTGGAATTTTGATGCACTGTTCCAGCCTCAGCAGCATCCTGCTCGTGACTCTCATGACA 805
Query 863 CCTTCTTTCTAAAAGTTCCCTCTACTACAAGA-ACACTT-CCGGAAGATTATGTTGAGAG 920
||||||||||||||| ||| || |||||||| | | || || |||||||||||||||||
Sbjct 806 CCTTCTTTCTAAAAGCTCCTTCAACTACAAGGGA-A-TTGCCAGAAGATTATGTTGAGAG 863
Query 921 GGTGAAACGTGTTCATGAGTCTGGTGGTTATGGATCAAGAGGGTATAATTATGATTGGAA 980
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 864 GGTGAAACAAGTTCATGAGTCTGGTGGATATGGATCGAGAGGGTATAATTATGATTGGAA 923
Query 981 AAGAGAAGAAGCAAACAAGAATCTTCTTCGTACCCACACAACGGCTGTCTCATCTAGGAT 1040
|||||| ||||||||||| ||||| ||||||||||||||||| || ||||||||||||||
Sbjct 924 AAGAGAGGAAGCAAACAAAAATCTCCTTCGTACCCACACAACAGCGGTCTCATCTAGGAT 983
Query 1041 GCTTTATGCACTAGCACAGAAACCTTTTG-TGCCCAAGAAGTACTTTTCGATTGACCGTG 1099
|||||||||||| ||| |||||||||| | ||||||||||||||||| || |||||||
Sbjct 984 GCTTTATGCACTTGCAAAGAAACCTTTCACT-CCCAAGAAGTACTTTTCTATAGACCGTG 1042
Query 1100 TCTTCAGAAACGAGGCTGTTGATCGGACCCACCTTGCAGAGTTCCATCAAATTGAAGGTT 1159
|||||||||||||||||||||| || ||||| || |||||||||||||| ||||||||||
Sbjct 1043 TCTTCAGAAACGAGGCTGTTGACCGAACCCATCTGGCAGAGTTCCATCAGATTGAAGGTT 1102
Query 1160 TGATATGTGATCGGGGCCTTACACTTGGA-GACCTGATTGGTGTATTA-GAAGACTTCTT 1217
|| | ||||| || ||||||||| |||| || || || ||||||||| | |||||| |
Sbjct 1103 TGGTCTGTGACCGTGGCCTTACA-TTGGGTGATCTCATCGGTGTATTACGG-GACTTCAT 1160
Query 1218 CTCACGCTTAGGGATGTCGAAATTGCGTTTCAAGCCAGCTTACAACCCTTACACAGAGCC 1277
|||||||||||||||||| || |||| |||||||| ||||||||||||||||| || ||
Sbjct 1161 CTCACGCTTAGGGATGTCCAAGCTGCGCTTCAAGCCTGCTTACAACCCTTACACCGAACC 1220
Query 1278 AAGCATGGAGATTTTCAGCTACCATGAAGGTTTAGGGAAGTGGGTGGAGATTGGAAACTC 1337
|||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||||||
Sbjct 1221 AAGCATGGAGATTTTCAGCTACCACGAAGGATTAGGGAAATGGGTAGAAATTGGAAACTC 1280
Query 1338 TGGGATGTTCAGACCCGAAATGCTT-CTACCGATGGGTCTCCCCGAGGATGTTAGAGTCA 1396
||| ||||||||||| |||||| || ||||||||||||||||| ||||| ||| ||||||
Sbjct 1281 TGGCATGTTCAGACCAGAAATG-TTGCTACCGATGGGTCTCCCAGAGGACGTTCGAGTCA 1339
Query 1397 TCGCTTGGGGTCTCTCTCTTGAAAGACCAACAATGATATTATACGGTATCGACAACATCC 1456
| || |||||||||||||||||||||||| ||||||| ||||||| || ||||||||||
Sbjct 1340 TTGCATGGGGTCTCTCTCTTGAAAGACCAGCAATGATTTTATACGACATTGACAACATCC 1399
Query 1457 GAGATTTGTTTGGACACAAGGTGGATCTCGATCTTATTAAACGGAATCCGATCTGCCGAA 1516
| || |||||||||||||||||||||| | ||| |||||||||||||||||||| || |
Sbjct 1400 GTGACCTGTTTGGACACAAGGTGGATCTTGGTCTCATTAAACGGAATCCGATCTGTCGCA 1459
Query 1517 TTGGAATCTAAGTGA 1531
|||||||| | ||||
Sbjct 1460 TTGGAATCGA-GTGA 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64677236010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5