BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39290.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327879 jgi|Araly1|327879|fgenesh1_pm.C_scaffold_7000106 608 2e-173
Ahg928609 jgi|Araly1|928609|scaffold_301066.1 65.8 7e-10
> Ahg327879 jgi|Araly1|327879|fgenesh1_pm.C_scaffold_7000106
Length=1011
Score = 608 bits (329), Expect = 2e-173
Identities = 551/649 (85%), Gaps = 52/649 (8%)
Strand=Plus/Plus
Query 115 GTTTCC-AAG-AAATTCCGGTCTCTCATTGCCTCAACGGAGCTTCAAGAGCTTAGATCAT 172
|||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 74 GTTTCCAAAGTAAATTCCGGTCTCTCATTGCCTCAACGGATCTTCAAGAGCTCAGATCAT 133
Query 173 TCTTAGGTTGTACTAGCAGTGGTCTTTACGTGTGTTTACGGTTCCGTACGAA-TACT--G 229
|||||||||| ||||||||||||||||| |||||||||| | |||||| || || |
Sbjct 134 TCTTAGGTTGCACTAGCAGTGGTCTTTATGTGTGTTTACTGCCCCGTACCAACTA-TAAC 192
Query 230 A-TTACAGACAAATTTGTTTCACCCTCCGCCAAAAAATAAGTAGCAGCGCCAAAATTTTG 288
| | ||| || |||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 193 ACTGACACACGAATTTGGTTCACCCTCCGCCAAAAAATAAACAGCTGCACCAAAATTTTG 252
Query 289 GTCCCAA-TATCATC-TCTTGATTCTCCTTTTGACTACAGATCAGGTGTTGTAGCGGTTG 346
||||||| ||| ||| |||| |||||||||||||||| || || |||||||| || ||
Sbjct 253 GTCCCAATTAT-ATCTTCTT-ATTCTCCTTTTGACTATAGGTCGGGTGTTGT---GG-TG 306
Query 347 GTTCTGATATCTATGCTATTGGTGGACGAAACTTAAATAATAGTGCATCGTCTA-AGGTC 405
| | |||| |||| | | | | | | ||| || | || || || ||||
Sbjct 307 G-T-TGAT-TCTA----A-T-AT--A-G-----T-AAT-AT-CT--AT-GT-TATTGGTC 342
Query 406 ATGGTCATGGACTGCCGTTCTCATACATGGCGTGAGGCTCCAAGCATGCGCGTGGCACGT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 ATGGTCATGGACTGCCGTTCTCATACATGGCGTGAGGCTCCAAGCATGCGCGTGGCACGT 402
Query 466 GATGACTTTCCATCTACTTGCGTCCTTAATGGGAAAATATATGTAATAGGAGGCTGCAAG 525
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GACAACTCCCCATCTACTTGCGTCCTTAATGGGAAAATATATGTAATAGGAGGCTGCAAG 462
Query 526 AATCTCGATTCAACAAATTGGATTGAAGTTTTCGATACGAAGACCCAAACATGGGAGTTT 585
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 463 AATCTCGATTCAACAAATTGGATTGAGGTTTTCGATACGAAGACCCAAACATGGGAGTTT 522
Query 586 TTGCAGATTCCTAACGAAGAGGTATGCAGAGGTTTTAATTACAAAA-TCGTAGGGTATAA 644
||||||||||||| ||||||| |||||||| ||||||| ||||||| | |||| ||||||
Sbjct 523 TTGCAGATTCCTAGCGAAGAGATATGCAGAAGTTTTAAATACAAAAGT-GTAGTGTATAA 581
Query 645 AGAAGCTATCCACGTAAGTTCATTAGA--A-AATAATCGTGCAACTTTCATGACTTACGA 701
|||| || | ||||||||| ||||| | ||| || ||| | || |||||||||| |
Sbjct 582 AGAAACTGTATACGTAAGTTGTTTAGACGAGAATTAT-GTG-A-CTGACATGACTTACAA 638
Query 702 GATACACAAAGGTAGATGGAGAGAGCCACACTTA-TCGTT-AAGTCATG 748
|||||| ||||| |||||||||||| |||||||| | ||| || |||||
Sbjct 639 GATACATAAAGGAAGATGGAGAGAGGCACACTTAAT-GTTCAA-TCATG 685
Score = 130 bits (70), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 7 ATGTCGAAGGAAGATGAGTCACAGATGACGTTTTCGATGCTTCCTGATGATTTGGTATTA 66
|||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCGAAGGAAGAAGAATCACAGATGACGTTTTCGATGCTTCCTGATAATTTGGTATTA 60
Query 67 AACTGTTTAGCCCGTGTTTCCAAAGT 92
||||||||||| |||||||||||||
Sbjct 61 AACTGTTTAGC--GTGTTTCCAAAGT 84
> Ahg928609 jgi|Araly1|928609|scaffold_301066.1
Length=1002
Score = 65.8 bits (35), Expect = 7e-10
Identities = 85/108 (79%), Gaps = 8/108 (7%)
Strand=Plus/Plus
Query 752 TTCAT-TTCTC-TAATTGTGTGATAGAGAACGTGTTCTACCGTTATAGTTACGAGATGC- 808
||||| |||| | |||||||||||||||||||||||||||| |||| | | ||| |
Sbjct 640 TTCATCATCTCATTATTGTGTGATAGAGAACGTGTTCTACCGCTATAATAAT-AGAAGGA 698
Query 809 TCCAATGGTATGACTCATGTAGAAAA-ATA-TGGAAAAATTTGAAAGG 854
|| |||||| |||||| | | |||| || |||| || |||||||||
Sbjct 699 TCGAATGGTGTGACTCC-G-ACAAAAGATTGTGGACAACTTTGAAAGG 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5