BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39300.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490707 jgi|Araly1|490707|fgenesh2_kg.7__140__AT4G39300.2 508 2e-143
> Ahg490707 jgi|Araly1|490707|fgenesh2_kg.7__140__AT4G39300.2
Length=442
Score = 508 bits (275), Expect = 2e-143
Identities = 291/299 (97%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 67 TTGTGCGAAATCTTAAGATCAAAGATGGCATCGTTTTGCAGATCAGCGTTAATGGCAGGT 126
|||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTGTGCAAAATCTTAAGATCAGAGATGGCGTCGTTTTGCAGATCAGCGTTAATGGCAGGT 60
Query 127 TCCAGAAACTTAGTATCAAGATCCAGAACCGTAACTCAAAAGTCCCTCAATCTTAAACCC 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TCCAGAAACTTAGTATCAAGATCCAGAACCGTTACTCAAAAGTCCCTCAATCTTAAACCC 120
Query 187 ACAACTACTTCATCTCCTTTCGCTTCAATGTCTCAATCCATCCCTCGCGCTTCGAGGGTT 246
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 ACAACTACTTCATCTCCTTTCGCTTCAATGTCCCAATCCATCCCTCGCGCTTCAAGGGTT 180
Query 247 CTCTCTGCTTTGGGAAGTGTTGAAACGATGATTCCACTTCACAGTGCCGTTGCTTCAGCT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCTCTGCTTTGGGAAGTGTTGAAACGATGATTCCACTTCACAGTGCCGTTGCTTCAGCT 240
Query 307 CGTCTCCGGTCAAGCATCGCTGCTGATTCCTCTTGTTGGAGCTTGCTTTCTCAGGGACT 365
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CGGCTCCGGTCAAGCATCGCTGCTGATTCCTCTTGTTGGAGCTTGCTTTCTCAGGAACT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5