BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39320.1
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943904 jgi|Araly1|943904|scaffold_700133.1 638 0.0
> Ahg943904 jgi|Araly1|943904|scaffold_700133.1
Length=562
Score = 638 bits (345), Expect = 0.0
Identities = 501/574 (87%), Gaps = 20/574 (3%)
Strand=Plus/Plus
Query 27 CTTATAAATAGAGAAGGCTATATGGGGAATTGTGCACTAAAGCCAAAAGTTCTGTCAGAA 86
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTAT-AATAGAAAAGGCTATATGGGGAATTGTGCACTAAAGCCAAAAGTTCTGTCAGAA 59
Query 87 ACCGGAGCTCCGGCGCCGGAGGAGCTCAAGGATTCACTTCTTGAATACCATAAGATGGAC 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 60 ACCGGAGCTCCGGCGCCGGAGGAGCTCAAGGATTCACTTCTTGAATACCATAAGATCGAC 119
Query 147 GCTGCAAAATCTCTTAGCAACTTGTTCCTTCAAGACAAGGCAGATAAGATAACGAAAGAA 206
||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||
Sbjct 120 GCTGCAAAATCTCTTAGCAACTTGTTCCTTCAAGACAAGACAGAGAAGACAACGAAAGAA 179
Query 207 GACGAGAAGATCACACCGGAAAAGATACCGGTTACTGATGATCTGAAAACAGCTTTGGAG 266
||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||| |
Sbjct 180 GACGAGAAGATCACACCAGAAAAGATGCCGGTAACTGAAGATCTGAAAACAGCTTTGGCG 239
Query 267 GAGGAAAA-TACTCCGACCAAAGAGGCAAAATCTCCGGCAACAGAGAC-AAAGTATTCGG 324
|||||||| | ||||||| ||||||||||||||||||| ||||||||| ||| ||| ||
Sbjct 240 GAGGAAAAAT-CTCCGACTAAAGAGGCAAAATCTCCGGTAACAGAGACCAAA-TATGCGA 297
Query 325 TAACAGAGA-AAAGAGCTCCGGCTGACAAGAAGATAACACCGGAAAT--GATGCCGGTTA 381
||||||||| ||| ||||||||||||| |||| ||||| | |||| || | |||
Sbjct 298 TAACAGAGACAAA-AGCTCCGGCTGACGAGAATATAACT--GAAAATCTGAAAACAGTTT 354
Query 382 CTGAAG-ATCTGAAAACAGTTTT-GG-AGGAGGAGGCAAAACCTCCTGCAACAGAGACAA 438
|| || | | ||| | | | || | || || ||||| ||||| || |||||||
Sbjct 355 -TGGAGGAG--GCAAA-A-TCTCCGGCAACAG-AGACAAAAACTCCTATTACCGAGACAA 408
Query 439 AAGCTATGGTTGATGATCAGAAGGTGAAGAACGAAGTGGCCGTTCGTGAAGAGAAAATCA 498
||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct 409 AAGCTCCGGTTGATGATCAGAAGGTGAAGAACGAAGAGGCCATTCGTAAAGAGAAAGTCA 468
Query 499 TTGACCTCGTGACTGTGAAAGAGAACGAAACAGAGGCGAAAACAGAGTAGGTGGGAAAAG 558
||||| | |||||||||||||||| || ||||||||||||| ||||| ||||||||| ||
Sbjct 469 TTGACGTTGTGACTGTGAAAGAGACCGGAACAGAGGCGAAAGCAGAGGAGGTGGGAAGAG 528
Query 559 AATAAACACAGTGAAACAGCCTTGAAACGCTAGT 592
|| | |||||||||||||||||||||||| |||
Sbjct 529 AAGCAGCACAGTGAAACAGCCTTGAAACGCCAGT 562
Score = 54.7 bits (29), Expect = 9e-07
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 288 GAGGCAAAATCTCCGGCAACAGAGACAAA 316
|||||||||||||||||||||||||||||
Sbjct 360 GAGGCAAAATCTCCGGCAACAGAGACAAA 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25847337726
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5