BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39340.1

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490711 jgi|Araly1|490711|fgenesh2_kg.7__144__AT4G39340.1          560    2e-159


> Ahg490711 jgi|Araly1|490711|fgenesh2_kg.7__144__AT4G39340.1
Length=384

 Score =  560 bits (303),  Expect = 2e-159
 Identities = 358/385 (93%), Gaps = 2/385 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTTCGA-ACACTACTTTCCTCTTCTCCACCGTCACACTTCTCATCATCCTCCTAAA  59
            ||| |||| | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct  1    ATGTCTTC-ACACACTACTTTCCTTTTCTCCACCGTCACACTTCTCCTCATCTTCCTAAA  59

Query  60   CACCACCGTCTCCGGTAGAGATCTCCCAGCGGAGTCATCAACCAACATAGCTGCGAGGCT  119
            ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  60   CACCACCGTCTCCGGCAGAGATCTCCCGGCGGAGTCATCAACCAACATAGCGGCGAGGCT  119

Query  120  CCAAAGTGGAGGACTGATGGAATGCTGGAACGCATTATACGAGCTGAAATCATGCACCAA  179
             ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  120  TCAAAGTGGAGGGCTAATGGAATGCTGGAACGCATTATACGAGCTGAAATCGTGCACCAA  179

Query  180  CGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGTGTTAGTTGTTGCGAATC  239
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct  180  TGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGCGTTAGTTGTTGCGAAGC  239

Query  240  CGTAGACATCATCACCACCAATTGCTGGCCGGCGATGCTCACTTCTCTCGGATTTACGCC  299
            ||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct  240  CGTCGATATCATCACTACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACGCC  299

Query  300  TGAGGAAGCTAATGTCCTTCGTGGCTTTTGTCAGAATCCAAACTCCGGCGACTCTTCTCC  359
            ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  300  TGAGGAAGCCAATGTCCTTCGTGGCTTTTGTCAGAATCCAAACTCCGACGACTCTTCTCC  359

Query  360  GGCTCCGTCTCCCAAAATAGTTTGA  384
              |||| ||||||||||||| ||||
Sbjct  360  TTCTCCTTCTCCCAAAATAGCTTGA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13736012040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5