BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39360.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490713 jgi|Araly1|490713|fgenesh2_kg.7__146__AT4G39360.1 444 5e-124
> Ahg490713 jgi|Araly1|490713|fgenesh2_kg.7__146__AT4G39360.1
Length=635
Score = 444 bits (240), Expect = 5e-124
Identities = 573/715 (80%), Gaps = 98/715 (14%)
Strand=Plus/Plus
Query 23 TATATaaaagacgacaaaacgaaacgatac-aacaaaaaacaacaac-a-atacacgtaa 79
|||||||||||||||||||| ||||||||| ||| |||||| ||||| | |||||||||
Sbjct 1 TATATAAAAGACGACAAAACAAAACGATACAAAC-AAAAAC-ACAACGATTTACACGTAA 58
Query 80 acgtgatcaaagtggtcaaaaaGGAGACAAGATAAATTCGATCGACAATCAGATATTCGA 139
||||||||| ||||||||||| |||||||||||||| | ||| ||| || | | |
Sbjct 59 ACGTGATCAGAGTGGTCAAAAGGGAGACAAGATAAA-T---TCG---ATC-GA-A-T-G- 106
Query 140 AAATGATCAATCAAATGGAGAAGATTTG-TTTTTCTGAAGACTCGGGGGTTACGTTTTCG 198
|| | | | | ||| ||| |||||||| ||| |||| | | ||||||||
Sbjct 107 ----GA--GA-C-----G-G-AGA-TTGTTTTTTCTGGAGAATCGGAGACTGCGTTTTCG 151
Query 199 GAGACGGAGATTGAGGCGGCGGAGCAGCTAGTGCAGTTGAGCGAAGAGGATACGTTGAGC 258
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 GAAACGGAGATGGAGGCGGCGGAGCAGCTAGTGCAGTTGAGCGAAGAGGATACGTTGAGC 211
Query 259 TGTAGCAGCGGC---ACTGGCTGTAGCGTTTCGACCGGTTACGACGGGTGTGACGGGAAA 315
|||||||||||| |||||||| ||||||| | | ||||||||||| |
Sbjct 212 TGTAGCAGCGGCGGCACTGGCTGGAGCGTTT-G-C-GGTTACGACGG-----A------- 256
Query 316 GGATCAGAAGGCAATAATACGAACATACAAGATGATGTTGTTAGTTCAAAGGTTAGAGAT 375
|||||||||||| ||||||| | |||||| |||||||||||||| ||||||||||||
Sbjct 257 ---TCAGAAGGCAATGATACGAAGAGACAAGAAGATGTTGTTAGTTCGAAGGTTAGAGAT 313
Query 376 CATATGGCCG-AAGAGGCGCAAAACGACGGCGTGTGGAGGA-TCAAGAATGTTACGAACG 433
||||| | || || ||| |||||||||||||||||| |||| | ||||||||||||||||
Sbjct 314 CATATTGTCGGAA-AGGAGCAAAACGACGGCGTGTGTAGGAAT-AAGAATGTTACGAACG 371
Query 434 GACAGAGTTTTCTGAAGGCGATGATGGAGACGAGGACA-GGCATACATAAGAAGAAGAAG 492
||||||||||| ||||| |||| |||||||||| |||| || ||| ||||||||||||||
Sbjct 372 GACAGAGTTTTATGAAGACGATCATGGAGACGAAGACAAGG-ATAAATAAGAAGAAGAAG 430
Query 493 TTTCGGTCTCTTGAGAGCATCTACAGAGCGACGAACGAGATGACGAGAGATT-AATTAGT 551
||||||||||| | ||||||||||||||||||||| |||||||||| || || ||| |||
Sbjct 431 TTTCGGTCTCTCGCGAGCATCTACAGAGCGACGAAGGAGATGACGAAAG-TTGAAT-AGT 488
Query 552 CTTAAGGGGATCATGGCTAAATAACGTTTAATGACGTTTGTTAGAAGCGTGTGTAATTAT 611
|||| | | | | | | ||| || | ||| || | | | || |||
Sbjct 489 -TTAATG--A-CGT---T---T---GTTAAAAG-CGT--GT--G-----T-T-TA-TTA- 521
Query 612 ACTATATGTCATCGTTTTCTATGGTTTTGTAAGT-A--ATGTACTA--GTATCTATTAGC 666
||||||||| |||||||| ||||||||||| || | ||||| || | ||||||| ||
Sbjct 522 -CTATATGTCCTCGTTTTCAATGGTTTTGTATGTCAGTATGTAATATAGAATCTATTGGC 580
Query 667 GTTGAACCGGGAGAAGGTGCTAGAAGAATTG--ACGCTTTGCAATAATTTTAACA 719
||||||||||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 581 GTTGAACCGGGAGAAGGTGCTAGAAGAATTGTGAAGCTTTGCAATAACTTTAACA 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5