BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39370.3
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888144 jgi|Araly1|888144|Al_scaffold_0007_130 1615 0.0
> Ahg888144 jgi|Araly1|888144|Al_scaffold_0007_130
Length=1482
Score = 1615 bits (874), Expect = 0.0
Identities = 1014/1082 (94%), Gaps = 7/1082 (1%)
Strand=Plus/Plus
Query 258 ATGGTTTCTAGAAGAGG--C-TCCGAGACAAAAGCGATTGTCTGTGTCCTCACGGATAGA 314
||||||||| | ||||| | ||||| ||||| |||||||| ||| || |||| ||||||
Sbjct 1 ATGGTTTCTCGTAGAGGTTCTTCCGACACAAAGGCGATTGTGTGTATCTTCACAGATAGA 60
Query 315 ATTAGGATCTCTAATCAA-TGGGTTTCGCATTTGTCTTTCGCTGGTCTACTTGGTGTTGC 373
||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ATTAGGATCTCCAA-CAACTGGGTTTCGCATTTGTCTTTCGCTGGTCTACTTGGTGCTGC 119
Query 374 TGGTTTCGTATTTGCCCAACAGCACGGTCTATTCCGCAACTTAAACAACTTAAAACTCTT 433
|||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct 120 TGGTTTTGTATTTGCCCAACAACACGGTCTATTCCCCAACTTAAACAACCTAAAACTCTT 179
Query 434 CTCCGGTAGAGAAAAAGACTCCGGAGACGATTCTTTTCTCGTACCTGGCCTTCAAAATCT 493
|||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 CTCCGGTAAAGAAAAAGACGCCGGAGACGATTCTTTTCTCGTACCGGGCCTTCAAAATCT 239
Query 494 CGGAAATAACTGCTTCCTCAACGTCATCCTCCAGGCTCTAGCGAGCTGCAAAGATTTTAG 553
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 240 CGGGAATAACTGCTTCCTCAACGTCATCCTCCAGGCTCTCGCGAGCTGCAAAGATTTTCG 299
Query 554 GAGTTTTCTTCAATGGGTTCTAGAGGATGCGAGAGGTT-CGTTAGCAGGAGAACAAGAGG 612
||||||||||||||||||| ||||||||||||||| || |||| |||||||||| |||||
Sbjct 300 GAGTTTTCTTCAATGGGTTTTAGAGGATGCGAGAGATTCCGTT-GCAGGAGAACTAGAGG 358
Query 613 AACAGCTTCCTCTTACTTTTGCTTTGTCTGCTTTATTACAAGAGCTCGGCACAGTTGGAA 672
|||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||| ||
Sbjct 359 AACAGCTTCCTCTTACTTATGCTTTGTCTGCTTTACTACAAGAGCTCTGCACTGTTGCAA 418
Query 673 GTAGACGATCTGTATCTAACCCTCGTAAAGTTATGGTGACATTGACTGACTATGCCAAAA 732
||||| ||||||| |||| ||||||||||||||||||| ||||||| || ||||||| ||
Sbjct 419 GTAGAAGATCTGTGTCTAGCCCTCGTAAAGTTATGGTGGCATTGACAGATTATGCCACAA 478
Query 733 ATTTCAATTTGACAAGCCAACAGGATGCAGCAGAAGCCCTTCTTCATCTTATATCTTCTT 792
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 ATTTCAATTTGACAAGCCAACAGGATGCAGCAGAAGCCCTTCTTCATCTTATTTCTTCTT 538
Query 793 TGCAAGAAGAGATTGTAGTTTGTTATCGCCCTAGCCAAAGTAGTAATCTTTCGGATATAC 852
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 539 TGCAAGAAGAGATTGTAGTTTGTTATCGTCCTAGCCAAAGTTGTAATCTTTCGGATATAC 598
Query 853 TTTTCTCTCGCAACTTGAGAATGCTTGCGCCTAGTGAAGGCCTCCATGGTTTGATGGAGC 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTTCTCTCGCAACTTGAGAATGCTTGCGCCTAGTGAAGGCCTCCATGGTTTGATGGAGC 658
Query 913 TCAAGAGATGGCATAAACATTTGCGTGGACCATTTGATGGGATTCTTGGTAGTACTTTAA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 659 TCAAGAGATGGCATAAACATTTGCGTGGACCATTTGATGGGATTCTTGGTAGTACGTTGA 718
Query 973 TGTGCCGAACTTGTTCATCTCAGATTTCTTTGGAGTTTCAGTTTTTTCATACTCTGCCTC 1032
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 TGTGTCGAACTTGTTCGTCTCAGATTTCGTTGGAGTTTCAGTTTTTTCATACTCTGCCTC 778
Query 1033 TTTCTCCTTTACTCCATCACGGTGGTTACAACATTATGTCTGGATGCACTTTGGAGCATT 1092
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||
Sbjct 779 TTTCTCCTTTACTCCATAACGGTGGTTACAACATTATGTTTGGATGCACTTTGGAGAATT 838
Query 1093 GCTTGAAGAAGTTTCTTAACACTGAGAAAGTTGAAAACTACTTCTGCTATAGATGCTGGC 1152
||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 839 GCTTGAACAAGTTTCTCGATGCTGAGAAAGTCGAAAACTACTTCTGCTATAGATGCTGGC 898
Query 1153 ATGGTGCTGCACTGAAATATTTATCTGTGATAGGAGCAGCTGAGACGGAAATCGAAAAGC 1212
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 899 ATGGTGCTGCACTGAAATATTTATCTGTGATAGGAGCAGCTGAGATAGATATCGAAAAGG 958
Query 1213 TCAGGAGCTGTGGCGGAGAGGACCAATGTGACTGTAAAACTTCTCTTCATCTTCAAAGAA 1272
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 TCAGGAGCTGTGGCGGAGAGGACCAATGTGACTGTAAAACTTCTCATCATCTTCAAAGAA 1018
Query 1273 TGCCTTGGTCAAATAGCTATTCCCATATATTGAAACAGTTAATCATCGCCCGTTTCCCAA 1332
||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct 1019 TGCCTTGGTCAAACAGCTATTCCCATATATTGAAGCAGTTAATCATTGCCCGTCTCCCAA 1078
Query 1333 AG 1334
||
Sbjct 1079 AG 1080
Score = 571 bits (309), Expect = 6e-162
Identities = 381/414 (92%), Gaps = 11/414 (3%)
Strand=Plus/Plus
Query 1365 AAA-CTCCTATGCATTCAAGTGCAACGCGCTTCGTTTAACATGTTTGAGGAATTCAAACT 1423
||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 1077 AAAGCTCCTATGCATTCAAGTGCAACGTGCTTCATTTAACATGTTTGAAGAATTCAAACT 1136
Query 1424 GTCGGGACATATCGCATTTCCACTTGTCTTGA-ACCTCTCCTTGTTCACACCATCTTCAA 1482
||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1137 ATCGGGACATATCGCATTTCCACTTGTCTT-AGACCTCTCCTTGTTCACACCAACTTCAA 1195
Query 1483 TAGGCGTAAACATAGAAGAAAGGATTGAGATGTCGTCAGAGTACCAAAAGCCAGAAGCAT 1542
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1196 TAGGCTTAAACATAGAAGAAAGGATTGAGATATCTTCAGAGTACCAAAAGCCAGAAGCAT 1255
Query 1543 CAAAAAATCACGGCATGTACAGGCTTGTAACAGTAGTGGAGCATTTTGGTAGAACCGGAA 1602
||| ||| || ||||| ||||||||||| || || ||||| |||||||||||||||||||
Sbjct 1256 CAAGAAAGCATGGCATATACAGGCTTGTGACGGTGGTGGAACATTTTGGTAGAACCGGAA 1315
Query 1603 GCGGGCATTATACTGTATACAGAAGTGTGAGAGTGTTC-TCACAAGAGGAAGAAGAAGAA 1661
|||||||||| ||||| || ||||||||||||||| || |||||||| | |||||||||
Sbjct 1316 GCGGGCATTACACTGTTTATAGAAGTGTGAGAGTG-TCATCACAAGA-G--GAAGAAGAA 1371
Query 1662 GATTGTGATGAGGATTTGAGCTGGTTTAGTATATCTGATTCAGAAGTTTGCAGAGTTTCA 1721
|| | || |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GA-T-TG-TGAGGAATTGTGCTGGTTTAGTATATCTGATTCAGAAGTTTGCAGAGTTTCA 1428
Query 1722 GAGAGTGATGTTCTTGGTGCTGAAGCTAGCTTGCTCTTCTATGAAAGGCTTTGA 1775
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1429 GAGAGTGATGTTCTTGGTGCTGAAGCTAGCTTGCTCTTCTATGAAAGGCTGTGA 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5