BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39380.2
Length=2048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490714 jgi|Araly1|490714|fgenesh2_kg.7__147__AT4G39380.1 2008 0.0
> Ahg490714 jgi|Araly1|490714|fgenesh2_kg.7__147__AT4G39380.1
Length=1703
Score = 2008 bits (1087), Expect = 0.0
Identities = 1324/1433 (92%), Gaps = 37/1433 (3%)
Strand=Plus/Plus
Query 3 AAAAATTCCCGCCTGGTTATTTCACTCCTCTCTGCTCTCTGGGCGATTTTTCTCTCTGAT 62
|||||||||||||||||||||||||||||||||||||||| || || |||||| |||||
Sbjct 1 AAAAATTCCCGCCTGGTTATTTCACTCCTCTCTGCTCTCTCGGAGA-TTTTCT-TCTGA- 57
Query 63 TCGTCGTCGTTCTCTTTTCGAAGATCTTCCTCTGCTTGCTCCGTCTGCTCTCGTTTAAAT 122
|| |||||||||||| |||||||||||| |||||| ||||||||| || ||||||||||
Sbjct 58 TC--CGTCGTTCTCTTCTCGAAGATCTTCGTCTGCTAGCTCCGTCTTCTGTCGTTTAAAT 115
Query 123 GGCTAGAAAGAAGACTGAAACTGCAACTGAGTCCTCAAAGGAGATCAAAGCGAAAGGAAA 182
||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 116 GGCTAGAAAGAAGACTGAAACTGCAACTGAGCCCTCAAAGGAGATCAAAGCCAGAGGAAA 175
Query 183 ATTCACCAGAGCCAAGAAGTCTATGAAAACAACTACTAAG-AATATCCATCAATCTGGAA 241
||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 176 ATTAACCAGAGCCAAGAAGTGTATGAAAACAACTACTAAGAAAT-TCCATCAATCTGGAA 234
Query 242 AACATAATAGT-GGAAAAGAGGAG--AA----GTATAAATGTTCAGCTCAGCCTTCATCT 294
||||||||| | |||| ||||||| || | | ||||||||||| ||||| |||||
Sbjct 235 AACATAATA-TCGGAAGAGAGGAGAAAACCCCTTCTCAATGTTCAGCTAAGCCTCCATCT 293
Query 295 TCTCAAGAGCAAAGGCTGATACATACTGAAGACCAAACTCAAAAAGTACCTGTCCTTGAT 354
|||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 294 TCTCAAGATCAAAGGCTGTTACATACCGATGACCAAACTCAAAAAGTACCTGTCCTTGAT 353
Query 355 ATCCATTCGAGCAAGGACGTTCCACGTTCTGGAAAAATGAAGCTGCAGCTCTTTCCTTTG 414
||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 354 CTCCATTCGAGCAAAGAGGTTCAACGTTCTGGAAAAATGAAGTTGCAGCTCTTTCCTTTG 413
Query 415 GATGCTCATACCCGTGAAGGATTGGAAAAGGACGGCTTTCACCCATACTTGGAGCTCACT 474
|||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct 414 GATGCTCATACCCGTGAAGGATTGGAAAAGGATGGCTTACACCCATACTTAGAACTCACT 473
Query 475 CTTAGCTCACGGAAGAAGATTTCTTCAGTGCTTCAACGCATTCACAGTAAGTGGGGCAGC 534
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 474 CTTAGCTCACGGAAGAAGATTTCGTCAGTGCTTCAACGCATTCACAGTAAGTGGGGCAGC 533
Query 535 TCAGAGATTGCTCGTGGAGATCCCACGTTGTACCCTTATGATACATCGGTACTTGCTTCT 594
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 534 TCAGAGATTGCTCGGGGAGATCCCACGTTGTACCCTTATGATAAATCGGTACTTGCTTCT 593
Query 595 GGTCATAAATGGGTAGCAAACAGCAACATCACTACAGGCAATGTCTATGAAGCTATTGGA 654
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 594 GGTCATAAATGGGTAGCAAACAGCAACATCACTACAGGCGATGTCTATGAAGCTATTGGA 653
Query 655 GCTCCATTTATTTTCCGCTTACGGTATGGGTGGTCCTCTGCGACTGAAAATAAAACCAAT 714
||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 654 GCTCCTTTTCTTTTCCGCTTAAGGTATGGGTGGTCCTTTGCGACTGAAAATAAAAACAAT 713
Query 715 GAACCGCCATCTCCTTCAACTCCAGGTACAGGAACGCAGATGTTAGGTTCAGAGAACCCA 774
|||||||||||||||||||| |||||||| |||| ||||||||| |||||||| |||| |
Sbjct 714 GAACCGCCATCTCCTTCAACGCCAGGTACGGGAAAGCAGATGTTTGGTTCAGATAACCAA 773
Query 775 TTGACTATGCTGTCCTCTCCAAATCAAGTGACTGACACACCTCCCTTGGAAAACTTACCG 834
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGGACAATGCTGTCCTCTCCAAATCAAGTGACTGACACACCTCCCTTGGAAAACTTACCG 833
Query 835 CATGATGGACAAGTTGAGTCAACGGAGAATAAGATAAACGATGGATCTGGCCCGACATTG 894
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 834 CCTGATGGACAAGTTGAGTCAACGGAGAATAAGATAAACGATGGATCTGGTCCGACATTG 893
Query 895 CTTTTTTGGGATGATGGATTAACAAGCCTAAGTATTGGTGGCTTGCTTTCAGAAGTATCA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTTTTTTGGGATGATGGATTAACAAGCCTAAGTATTGGTGGCTTGCTTTCAGAAGTATCA 953
Query 955 TTGAAGGGAAACTTTGGAAATCATTGTAAAAATTCAAACGCAGGGAATGCAAATGCAACT 1014
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 954 TTGAAGGGAAACTTTGGAAATCATTGTATAAATTCAAACGCAGGGAATGCAAACGCAACT 1013
Query 1015 CTCTGGGAAGACAATCTTACTAACATAAGCATTGGAGGTCTATTTTCTGAGGCTTCTTTA 1074
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1014 CTCTGGGAAGACAATCTTACTAACATAAGCATTGGAGGTCTGTTTTCTGAGGCTTCTTTA 1073
Query 1075 CAAGACAGATGGCATATGAACAATGAACGAG-AACCAGCTCATAAT------G--G-TCA 1124
||||||||||| ||||||||| |||| | || |||||||||||||| | | |||
Sbjct 1074 CAAGACAGATGTCATATGAACCATGAGC-AGGAACCAGCTCATAATAATAATGATGGTCA 1132
Query 1125 GTCTATTGGAAGTATAGGAGGCTTACTATCTGAAGCATCAAT-TCTAGGAGAAGGAAGGA 1183
| | | ||||||||||||||||||||| || |||||||| | ||||||||| ||||||
Sbjct 1133 GACAAGTGGAAGTATAGGAGGCTTACTCTCCGAAGCATCT-TCTCTAGGAGAGGGAAGGT 1191
Query 1184 TTAGTGACTGTAACAAAACATGGGAAACAAGGAGAGCTATCAAACAACCACCATTACCTC 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1192 TTAGTGACTGTAACAAAACATGGGAAACAAGGAGAGCTATCAAACAACCACCATTACATC 1251
Query 1244 TAATCTCTGATTCATTAGATGCTTTCCTCGTGAACCAAACAGATAACCGTCGAGCTCCTT 1303
|||||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 1252 TAATCTCTGATTCATTAGATGCTTTCCTCGTGAACCAAAC---T--C-G---AGCTCCTT 1302
Query 1304 GCCATGCCCCTCTTCCTGAGTCGTCACATTCGTCTATACTCGATGCAGAAGATACGTGCC 1363
||| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1303 GCCCTGCTCCTCTTCCTGAGCCGTCACATTCGTCTATACTTGATGCAGACGATACATGCC 1362
Query 1364 ATGCATTTTCATTTCGAAAGCGTACCACAATAACACCAAAGGTTCACGATCAG 1416
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1363 ATGCATTTTCATTTCGAAAGCGTACCACAATAACACCAAAGGTTCACGACCAG 1415
Score = 477 bits (258), Expect = 1e-133
Identities = 280/291 (96%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 1462 CAGGTAAGTGGAGAAGTTGAGAAGGAGAAACAGATTGATGAATCGAACCCCGCAAAACCA 1521
|||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1413 CAGGTAAGTGGAGAAGCTGAGAAGGAGCAACAGAAAGATGAATCGAACCCCGCAAAACCA 1472
Query 1522 TTATTGGGTTCCTCGGTGTTTAATCAAGACAGCAGCCTCGGATTATCAGGAATCAAGTGG 1581
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 TTACTGGGTTCCTCGGTGTTTAATCAAGACAGCAGCCTCGGATTATCAGGAATCAAGTGG 1532
Query 1582 GCTGAATCACGGGGACCATTTGATTTCGGCTTATCTTCATCGCGAAAGTTTGCTAATGGA 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 GCTGAATCACGGGGACCATTTGATTTCGGCTTATCTTCATCGCGAAAGTTTGCTAATGGA 1592
Query 1642 GACAGCGTAAGCTTTGGTGCTGTAGTAAAAGATTTGCAGGAAATGGAGCCTTTAGAAAAG 1701
||||||||| ||||||| ||||| |||||| |||||| ||||||||||||||||||||||
Sbjct 1593 GACAGCGTAGGCTTTGGAGCTGTGGTAAAAAATTTGCCGGAAATGGAGCCTTTAGAAAAG 1652
Query 1702 AAAATAAAGCTTCAAAAGCATTGAAACTCATGAACAATAATCATTCCACAG 1752
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1653 AAAATAAAGCTTCAAAAGCATTGAAACTCATGAACAATAATTATTCCACAG 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77018475390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5