BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39390.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327889 jgi|Araly1|327889|fgenesh1_pm.C_scaffold_7000116 1507 0.0
> Ahg327889 jgi|Araly1|327889|fgenesh1_pm.C_scaffold_7000116
Length=1029
Score = 1507 bits (816), Expect = 0.0
Identities = 957/1020 (94%), Gaps = 29/1020 (3%)
Strand=Plus/Plus
Query 314 ATGAGTGCTACTA-CAAGCAAGACGGATCAGAAAGCGGCATTAGACATTGCATCATGGCT 372
|||||||| || | | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAGTGCAACAAGC-AGCAAGACGGATCAAAAAGCGGCATTAGACATTGCATCATGGCT 59
Query 373 ATTCAATGTGGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTA 432
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATTCAATGTTGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTA 119
Query 433 TGGCTTTAGTTTCGCTACTACATTAACCGGTTTGCATTTCGGAACAACGACATTGTTGAC 492
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TGGCTTTAGTTTCGCTACAACATTAACCGGTTTGCATTTCGGAACAACCACATTGTTGAC 179
Query 493 AACTTTCTTGACATGGCTTGGTTATATCCAACCTTCTCAGCTTCCTTGGCCTGATCTTTT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACTTTCTTGACATGGCTTGGTTATATCCAACCTTCTCAGCTTCCTTGGCCTGATCTTTT 239
Query 553 GAAATTCGTTTTGTTCGCTAACTTCTCTATCGTTGGGATGAACGTCAGTCTCATGTGGAA 612
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 240 GAAATTCGTTTTGTTCGCTAACTTCTCCATTGTTGGGATGAACGTGAGTCTCATGTGGAA 299
Query 613 TTCTGTTGGCTTCTACCAGATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTCTTCTAGA 672
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 TTCTGTTGGATTCTACCAGATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTTTTCTAGA 359
Query 673 AGTTATGCTTGACAATGTCAGGTATTCAAGAGATACAAAGCTTAGCATTTTGTTAGTTCT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGTTATGCTTGACAATGTCAGGTATTCAAGAGATACAAAGCTTAGCATTTTGTTAGTTCT 419
Query 733 TGCTGGTGTTGCCGTCTGTACTGTAACCGATGTTAGTGTCAATCTCAACGGATTTCTAGC 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TGCTGGTGTTGCCGTCTGTACTGTAACCGATGTTAGTGTCAATCTCAACGGATTTCTCGC 479
Query 793 TGCCGCTATTGCTGTCTGGAGCACCGCGCTTCAGCAATACTATGTACATTATCTACAACG 852
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 TGCTGCTATTGCTGTCTGGAGCACCGCGCTCCAGCAATACTATGTACATTATCTACAACG 539
Query 853 GAAATATTCACTCGGTTCTTTCAATTTACTGGCGCATACCGCTCCAGTTCAAGCTGCGTC 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 GAAATATTCACTCGGTTCTTTCAATTTACTGGCGCATACCGCTCCAGTTCAAGCTGCATC 599
Query 913 ATTGTTGTTGGTCGGACCATTTCTAGACTACTGGTTGACTAACCAAAGAGTGGATGCATA 972
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 ATTGTTGTTGGTCGGACCATTTCTAGACTACTGGTTGACAAACCAAAGAGTGGATGCATA 659
Query 973 CAAC---T--TTT-CAT-T-TG---TA--T----C--TC---T-----GTTCTTCTTAAT 1005
|||| | ||| || | || || | | || | ||||||||||||
Sbjct 660 CAACTTTTCATTTGTATCTCTGCTCTACCTAACCCAATCTTTTGGGCAGTTCTTCTTAAT 719
Query 1006 ACTCTCGTGCAGTATCGCGGTTGGGACCAATCTCAGCCAATTCATCTGTATTGGAAGATT 1065
||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 720 ACTATCGTGCAGTATAGCGGTCGGGACCAATCTCAGCCAATTCATCTGTATCGGAAGGTT 779
Query 1066 CACGGCGGTGTCTTTCCAAGTACTTGGTCACATGAAGACAATTCTGGTTTTGGTTTTGGG 1125
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CACGGCGGTGTCTTTTCAAGTACTTGGTCACATGAAGACAATTCTGGTTTTGGTTTTGGG 839
Query 1126 ATTCACTTTCTTCGGTAAGGAAGGATTAAACCTACAAGTAGTGCTTGGAATGCTGATTGC 1185
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 840 ATTCACTTTCTTTGGTAAGGAAGGTTTAAACCTACAAGTAGTGCTTGGAATGCTCATTGC 899
Query 1186 TATACTCGGTATGATCTGGTACGGTAATGCATCTTCTAAACCGGGTGGTAAAGAACGTCG 1245
|| || |||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 900 GATCCTAGGTATGATCTGGTACGGTAATGCATCTTCTAAACCGGGCGGTAAAGAGCGCCG 959
Query 1246 TAGCCTGTCTATTCCCATAACCAAGTCACAGAAACTATCTGAAACAAACGAATCTGATGA 1305
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TAGCCTCTCTATTCCTATAACCAAGTCACAGAAACTATCTGAAACAAACGAATCTGATGA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5