BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39400.1
Length=4166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943915 jgi|Araly1|943915|scaffold_700144.1 5860 0.0
Ahg914388 jgi|Araly1|914388|Al_scaffold_0001_4642 632 6e-180
> Ahg943915 jgi|Araly1|943915|scaffold_700144.1
Length=3630
Score = 5860 bits (3173), Expect = 0.0
Identities = 3485/3638 (96%), Gaps = 12/3638 (0%)
Strand=Plus/Plus
Query 143 TCTCTCTC-ACAAACTCTTGAGAAATGAAGActttttcaagcttctttctctctgtaaca 201
|||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCAAAAAACTC-TGAG-AATGAAGACTTTTTCAAGCTTCTTTCTCTCTGTAACA 58
Query 202 actctcttcttcttctccttcttttctctttcATTTCAAGCTTCACCATCTCAGTCTTTA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACTCTCTTCTTCTTCTCCTTCTTTTCTCTTTCATTTCAAGCTTCACCATCTCAGTCTTTA 118
Query 262 TACAGAGAAATCCATCAGCTTATAAGCTTCAAAGACGTTCTTCCTGACAAGAATCTTCTC 321
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 119 TACAGAGAAATCCATCAGCTTATAAGCTTCAAAAACGTTCTTCCTGACAAGAATCTTCTC 178
Query 322 CCAGACTGGTCTTCCAACAAAAACCCGTGTACTTTCGATGGCGTTACTTGCAGAGACGAC 381
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 179 TCAGACTGGTCTTCCAACAAAAACCCGTGTACTTTCGATGGCGTTACTTGTAAAGACGAC 238
Query 382 AAAGTTACTTCGATTGATCTCAGCTCCAAGCCTCTCAACGTCGGATTCAGTGCCGTGTCC 441
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 239 AAAGTTACTTCGATTGATCTCAGTTCCAAGCCTCTCAACGTCGGATTCAGTGCCGTGGCT 298
Query 442 TCGTCTCTCCTGTCTCTCACCGGATTAGAGTCTCTGTTTCTCTCAAACTCACACATCAAT 501
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCATCTCTCATGTCTCTCACCGGATTAGAGTCTCTGTTTCTCTCAAACTCACACATCAAT 358
Query 502 GGCTCCGTTTCTGGCTTCAAGTGCTCTGCTTCTTTAACCAGCTTGGATCTATCTAGAAAC 561
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 359 GGCTCCATTTCTGGCTTCAAGTGCTCTGCTTCTTTAACCAGTTTGGATCTATCAAGAAAC 418
Query 562 TCTCTTTCGGGTCCTGTAACGACTCTAACAAGCCTTGGTTCTTGCTCCGGTCTGAAGTTT 621
||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 419 TCTCTGTCGGGTCCTGTAACGACTCTAACAAGTCTTGGTTCTTGTTCCGGTCTGAAATTT 478
Query 622 CTTAACGTCTCTTCCAATACACTTGATTTTCCCGGGAAAGTTTCAGGTGGGTTGAAGCTA 681
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTTAACGTCTCCTCCAATACTCTTGATTTTCCCGGGAAAGTTTCAGGTGGGTTGAAGCTA 538
Query 682 AACAGCTTGGAAGTTCTGGATCTTTCTGCGAATTCAATCTCCGGTGCTAACGTCGTTGGT 741
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 539 AACAGCTTGGAAGTTCTGGATCTTTCTTCGAATTCACTCTCCGGTGCTAACGTCGTTGCT 598
Query 742 TGGGTTCTCTCCGATGGGTGTGGAGAGTTGAAACATTTAGCGATTAGCGGAAACAAAATC 801
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 599 TGGGTTCTCTCCGATGGCTGTGGAGAGTTGAAGCATTTAGCGATTAGCGGAAACAAAATC 658
Query 802 AGTGGAGACGTCGATGTTTCTCGCTGCGTGAATCTCGAGTTTCTCGATGTTTCCTCCAAC 861
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 659 AGTGGAGACGTTGATGTTTCTCGTTGCGTGAATCTCGAGTTTCTCGATGTTTCCTCGAAC 718
Query 862 AATTTCTCCACTGGGATTCCTTTCCTCGGAGATTGCTCTGCTCTGCAACATCTTGACATC 921
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 719 AATTTCTCCACTGGGATTCCTTTTCTTGGAGATTGCTCTGCTCTGCAACATCTTGACATC 778
Query 922 TCCGGGAACAAATTATCCGGCGATTTCTCCCGTGCTATCTCTACTTGCACAGAGCTCAAG 981
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 779 TCCGGGAACAAATTATCCGGCGATTTCTCTCGTGCTATCTCTACTTGCACAGAGCTCAAG 838
Query 982 TTGTTGAACATCTCTAGTAACCAATTCGTCGGACCAATCCCTCCGCTACCGCTTAAAAGT 1041
|||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 839 TTGTTGAACATCTCCGGTAACCAATTCGTCGGACCAATCCCACCACTACCGCTTAAAAGT 898
Query 1042 CTCCAATACCTCTCTCTGGCCGAGAACAAATTCACCGGCGAGATCCCTGACTTTCTCTCC 1101
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 899 CTCCAATACCTCTCTCTGGCTGAGAACAAATTCACCGGCGAGATCCCTGAGTTTCTCTCC 958
Query 1102 GGCGCGTGTGATACACTCACTGGTCTCGATCTCTCTGGAAATCATTTCTACGGTGCGGTT 1161
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 959 GGCGCGTGTGATACACTCACTGGTCTTGATCTCTCTGGAAATGTTTTCTACGGTACGGTT 1018
Query 1162 CCTCCATTCTTCGGTTCATGTTCTCTTCTCGAATCACTCGCGTTGTCGAGTAACAACTTC 1221
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1019 CCTCCATTCTTCGGTTCTTGTTCTCTTCTGGAATCACTCGCGTTGTCGAGTAACAACTTC 1078
Query 1222 TCTGGCGAGTTACCGATGGATACGTTGTTGAAGATGAGAGGACTCAAAGTACTTGATCTG 1281
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCCGGCGAGTTACCGATGGATACGTTGTTGAAGATGAGAGGACTCAAAGTACTTGATCTG 1138
Query 1282 TCTTTCAACGAGTTTTCCGGCGAATTACCGGAATCTCTGACGAATCTATCCGCTTCGTTG 1341
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCTTTCAACGAGTTTTCCGGTGAATTACCGGAATCTCTGACGAATCTATCCGCTTCGTTG 1198
Query 1342 CTAACGTTAGATCTCAGCTCCAACAATTTCTCCGGTCCGATTCTCCCAAATCTCTGCCAG 1401
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1199 CTAACGTTAGATCTCAGCTCCAACAATTTCTCCGGTCCGATTCTCCCGAATCTCTGCCGG 1258
Query 1402 AACCCTAAAAACACTCTGCAGGAGCTTTACCTTCAGAACAATGGCTTCACCGGGAAGATT 1461
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 AACCCTAAAAACACTCTGCAGGAGCTTTATCTTCAGAACAATGGCTTCACCGGGAAGATT 1318
Query 1462 CCACCGACTTTAAGCAACTGTTCTGAGCTGGTTTCGCTTCACTTGAGCTTCAATTACCTC 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CCACCGACTTTAAGCAACTGTTCTGAGCTGGTTTCGCTTCACTTGAGCTTCAATTACCTC 1378
Query 1522 TCCGGGACAATCCCTTCGAGCTTAGGCTCTCTATCGAAGCTTCGAGATCTGAAACTATGG 1581
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1379 TCCGGGACAATCCCTTCGAGCTTAGGCTCTCTGTCGAAGCTTCGAGATCTGAAACTGTGG 1438
Query 1582 CTGAATATGTTAGAAGGAGAGATCCCTCAGGAGCTCATGTATGTCAAGACCTTAGAGACT 1641
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1439 CTGAATATGTTAGAAGGAGAGATCCCTCAGGAGCTCATGAATGTCAAGACCTTGGAGACT 1498
Query 1642 CTGATCCTCGACTTCAACGATTTAACCGGTGAAATCCCTTCCGGTTTAAGTAACTGTACC 1701
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CTGATTCTCGACTTCAACGACTTAACCGGTGAAATCCCTTCCGGTTTAAGTAACTGTACC 1558
Query 1702 AATCTTAACTGGATTTCTCTGTCGAATAACCGGTTAACCGGTGAGATTCCGAAA-TGGAT 1760
||||| |||||||||||||| ||||||||||||||||||||| ||||||| || |||||
Sbjct 1559 AATCTGAACTGGATTTCTCTCTCGAATAACCGGTTAACCGGTCAGATTCC-AAGGTGGAT 1617
Query 1761 TGGCCGGTTAGAGAATCTCGCTATCCTCAAGCTAAGCAACAATTCATTCTCCGGGAACAT 1820
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 1618 CGGCCGGTTAGAGAATCTCGCTATCCTCAAGCTGAGCAACAATTCATTCTACGGAAACAT 1677
Query 1821 TCCGGCTGAGCTCGGCGACTGCAGAAGCTTAATCTGGCTTGATCTCAACACCAATCTC-T 1879
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1678 TCCGGCTGAGCTCGGCGACTGCAGAAGCTTAATCTGGCTTGATCTCAACACCAAT-TCCT 1736
Query 1880 TCAATGGAACGATTCCGGCGGCGATGTTTAAACAATCCGGGAAAATCGCTGCCAATTTCA 1939
|||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||
Sbjct 1737 TCAACGGAACGATTCCGGCGGAAATGTTCAAACAATCCGGGAAAATCGCTGTCAATTTCA 1796
Query 1940 TCGCCGGTAAGAGGTACGTTTATATCAAAAACGATGGGATGAAGAAAGAGTGTCATGGAG 1999
|||||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||
Sbjct 1797 TCGCCGGTAAGAGGTACGTTTACATTAAAAACGATGGGATGAAGAAACAGTGTCACGGAG 1856
Query 2000 CTGGTAATTTACTTGAGTTTCAAGGAATCAGATCCG-AACAATTAAACCGGCTTTCAACG 2058
|||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||| |||
Sbjct 1857 CTGGTAATTTACTTGAGTTTCAAGGAATCAGA-CCGGAACAACTAAACCGGGTTTCGACG 1915
Query 2059 AGGAACCCTTGTAATATCACTAGCAGAGTCTATGGAGGTCACACTTCGCCGACGTTTGAT 2118
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1916 AGGAACCCTTGTAATTTCAC---CAGAGTCTATGGAGGTCACACTTCGCCGACGTTTGAT 1972
Query 2119 AACAATGGTTCGATGATGTTTCTGGACATGTCTTACAACATGTTGTCTGGATACATACCG 2178
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1973 AACAACGGTTCGATGATGTTTCTGGACATGTCTTATAACATGTTGTCTGGATACATACCA 2032
Query 2179 AAGGAGATTGGTTCGATGCCTTATCTGTTTATTCTCAATTTGGGTCATAACGATATCTCT 2238
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2033 AAGGAGATTGGTTCGATGCCTTATCTGTTTATTCTCAATTTGGGTCATAACTTTATCTCT 2092
Query 2239 GGTTCGATTCCTGATGAGGTAGGTGATCTAAGAGGTTTAAACATTCTTGATCTTTCAAGC 2298
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 2093 GGTTCGATTCCTGATGAGGTAGGTGATCTGAGAGGGTTAAACATTCTTGATCTCTCAAGC 2152
Query 2299 AATAAGCTCGATGGGAGGATTCCTCAGGCTATGTCAGCTCTTACTATGCTTACGGAAATC 2358
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2153 AATAAGCTCGAAGGGAGGATTCCTCAGGCTATGTCAGCGCTTACTATGCTTACGGAAATC 2212
Query 2359 GATTTGTCGAATAATAATTTGTCTGGTCCGATTCCTGAGATGGGTCAGTTTGAGACTTTT 2418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 GATTTGTCGAATAATAATTTGTCTGGTCCGATTCCTGAGATGGGTCAGTTTGAGACTTTT 2272
Query 2419 CCACCGGCTAAGTTCTTGAACAATCCTGGTCTCTGTGGTTATCCTCTTCCGCGGTGTGAT 2478
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2273 CCACCGGCTAAGTTCTTGAACAATTCTGGTCTCTGTGGTTATCCGCTTCCGCGGTGTGAT 2332
Query 2479 CCTTCAAATGCAGACGGTTATGCTCATCATCAGAGATCTCATGGAAGGAGACCAGCGTCC 2538
|| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 CCCTCAAATGCAAACGGGTATGCTCATCATCAGAGATCTCATGGAAGGAGACCAGCGTCT 2392
Query 2539 CTTGCTGGTAGTGTGGCGATGGGATTGTTGTTCTCTTTTGTGTGTATATTTGGGCTGATC 2598
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2393 CTTGCTGGTAGCGTGGCGATGGGATTGTTGTTCTCTTTTGTGTGTATATTTGGGTTGATC 2452
Query 2599 CTTGTTGGTAGAGAGATGAGGAAGAGACGGAGAAAGAAAGAGGCGGAGTTGGAGATGTAT 2658
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2453 CTTGTTGGTAGAGAGATGAGGAAGAGACGGAGAAAGAAAGAGGCGGAATTGGAGATGTAT 2512
Query 2659 GCGGAAGGACATGGAAACTCTGGCGATAGAACTGCTAACAACACCAATTGGAAGCTGACT 2718
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2513 GCGGAAGGACATGGAAACTCTGGCGATAGAACCGCTAACAACACCAATTGGAAGCTGACG 2572
Query 2719 GGTGTGAAAGAAGCCTTGAGTATCAATCTTGCTGCTTTCGAGAAGCCATTGCGGAAGCTC 2778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2573 GGTGTGAAAGAAGCCTTGAGTATCAATCTTGCTGCTTTCGAGAAGCCATTGCGGAAACTC 2632
Query 2779 ACGTTTGCGGATCTTCTTCAGGCTACCAATGGTTTCCATAATGATAGTCTGATTGGTTCT 2838
|||||||||||||||||| |||| || || ||||| | || |||||||||||||| ||
Sbjct 2633 ACGTTTGCGGATCTTCTTAAGGCCACAAACGGTTTTGACAACGATAGTCTGATTGGATCC 2692
Query 2839 GGTGGGTTTGGAGATGTTTACAAAGCGATTTTGAAAGATGGAAGCGCGGTGGCTATCAAG 2898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2693 GGTGGGTTTGGAGATGTTTACAAAGCGATTTTGAAAGATGGAAGCGCGGTGGCTATCAAG 2752
Query 2899 AAACTGATTCATGTTAGCGGTCAAGGTGATAGAGAGTTCATGGCGGAGATGGAAACCATT 2958
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 2753 AAACTGATTCATGTTAGCGGTCAAGGTGACAGAGAGTTCATGGCAGAGATGGAAACGATT 2812
Query 2959 GGGAAGATCAAACATCGAAATCTTGTGCCTCTTCTTGGTTATTGCAAAGTTGGAGACGAG 3018
|||||||| ||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 2813 GGGAAGATAAAACACCGAAATCTTGTTCCGCTTCTTGGTTACTGCAAAGTTGGAGACGAG 2872
Query 3019 CGGCTTCTTGTGTATGAGTTTATGAAGTATGGAAGTTTAGAAGATGTTTTGCACGACCCC 3078
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2873 CGGCTTCTTGTGTATGAGTTCATGAAGTATGGAAGTTTGGAAGATGTTTTGCACGACCCG 2932
Query 3079 AAGAAAGCTGGGGTGAAACTAAACTGGTCCACACGGCGGAAGATTGCGATAGGATCAGCT 3138
||||||||||| ||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 2933 AAGAAAGCTGGCGTGAAACTAAACTGGTCCACACGGCGGAAAATCGCAATCGGATCAGCT 2992
Query 3139 AGAGGGCTTGCTTTCCTTCACCACAACTGCAGTCCGCATATCATCCACAGAGACATGAAA 3198
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2993 AGAGGGCTTGCTTTTCTTCACCACAACTGCAGTCCGCATATCATCCACAGAGACATGAAA 3052
Query 3199 TCCAGTAATGTGTTGCTTGATGAGAATTTGGAAGCTCGGGTTTCAGATTTTGGCATGGCG 3258
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3053 TCTAGTAATGTGTTGCTGGATGAGAATTTGGAAGCTCGGGTTTCAGATTTTGGCATGGCA 3112
Query 3259 AGGCTGATGAGTGCGATGGATACGCATTTAAGCGTCAGTACATTAGCTGGTACACCGGGT 3318
||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 3113 AGGCTGATGAGCGCGATGGATACACATTTAAGTGTCAGTACATTAGCTGGTACGCCGGGT 3172
Query 3319 TACGTTCCTCCAGAGTATTACCAAAGTTTCAGGTGTTCAACAAAAGGAGACGTTTATAGT 3378
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3173 TACGTTCCTCCGGAGTATTACCAAAGTTTCAGGTGTTCAACAAAAGGAGACGTTTATAGT 3232
Query 3379 TACGGTGTGGTCTTACTCGAGCTACTCACGGGTAAACGGCCAACGGATTCACCGGATTTT 3438
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 3233 TACGGTGTGGTCTTACTCGAGCTACTCACAGGTAAACGGCCAACCGATTCACCGGATTTT 3292
Query 3439 GGAGATAACAACCTTGTTGGATGGGTGAAACAGCACGCAAAACTGCGGATTAGCGATGTG 3498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3293 GGAGATAACAACCTTGTTGGATGGGTGAAACAGCACGCAAAACTGCGGATTAGCGACGTG 3352
Query 3499 TTTGACCCCGAGCTTATGAAGGAAGATCCAGCATTAGAGATCGAACTTTTACAACATTTA 3558
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3353 TTTGACCCTGAGCTTATGAAGGAAGATCCAGCATTAGAGATCGAACTTTTACAACATTTA 3412
Query 3559 AAAGTTGCGGTTGCGTGTTTGGATGATCGGGCTTGGAGACGACCGACAATGGTACAAGTC 3618
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3413 AAAGTTGCGGTTGCGTGTTTGGATGATAGGGCTTGGAGACGACCGACAATGGTACAAGTC 3472
Query 3619 ATGGCCATGTTTAAGGAGATACAAGCCGGGTCAGGGATAGATTCACAGTCAACGATCAGA 3678
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 3473 ATGGCCATGTTTAAGGAGATACAAGCCGGGTCAGGGATAGATTCACAGTCGACGATCGGA 3532
Query 3679 TCAATAGAGGATGGAGGGTTCAGTACAATAGAGATGGTTGATATGAGTATAAAAGAAGTT 3738
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3533 TCAATAGAAGATGGAGGGTTCAGTACAATAGAGATGGTTGATATGAGTATTAAAGAAGTT 3592
Query 3739 CCTGAAGGAAAATTATGAGAGTTAGAAACAGAGCCAAA 3776
|||||||| |||||||||||||||||||||||||||||
Sbjct 3593 CCTGAAGGCAAATTATGAGAGTTAGAAACAGAGCCAAA 3630
> Ahg914388 jgi|Araly1|914388|Al_scaffold_0001_4642
Length=780
Score = 632 bits (342), Expect = 6e-180
Identities = 472/531 (89%), Gaps = 23/531 (4%)
Strand=Plus/Plus
Query 1152 CGGTGCGGTTCCTCCATTCTTCGGTTCATGTTCTCTTCTCGAATCAC-TCGCGTTGTCGA 1210
|||| |||||||||| |||||||| || ||||| ||||| ||||||| | | ||||||||
Sbjct 267 CGGTACGGTTCCTCCTTTCTTCGGCTCTTGTTCACTTCTGGAATCACAT-GTGTTGTCGA 325
Query 1211 GTAACAACTTCTCTGGCGAGTTACCGATGGATACGTTGTTGAAGATGAGAGGACTCAAAG 1270
||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| |||
Sbjct 326 GTAACAACTTCTCTGGCAAGTTACCAATGGATACGTTACTGAAGATGAGAGGTCTC-AAG 384
Query 1271 TACTTGATCTGTCTTTCAACGAGTTTTCCGGCGAATTACCGGAATCTCTGACGAATCTAT 1330
|||| |||||||||||||| ||||||||| | | | ||| ||| | || |
Sbjct 385 TACTCGATCTGTCTTTCAATGAGTTTTCC-G-G------C-GAA--TCT---G--TC--T 426
Query 1331 CCGCTTCGTTGCTAACGTTAGATCTCAGCTCCAACAATTTCTCCGGTCCGATTCTCCCAA 1390
||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 427 --GCTTCGTTGCTAACGCTAGATCTCAGCTCCAACTATTTTTCCGGTCCGATTTTCCCAA 484
Query 1391 ATCTCTGCCAGAACCCTAAAAACACTCTGCAGGAGCTTTACCTTCAGAACAATGGCTTCA 1450
||||||| | ||| |||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 485 ATCTCTGTCGGAATCCTAAAAATAATCTCCAGGAGCTTTACCTTCAGAACAATGGCTTCA 544
Query 1451 CCGGGAAGATTCCACCGACTTTAAGCAACTGTTCTGAGCTGGTTTCGCTTCACTTGAGCT 1510
|||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 545 CCGGGAAGATCCCACCGACGTTAAGCAACTGCTCTGAGCTCGTTTCGCTTCACTTGAGCT 604
Query 1511 TCAATTACCTCTCCGGGACAATCCCTTCGAGCTTAGGCTCTCTATCGAAGCTTCGAGATC 1570
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 605 TCAATTACCTCTCCGGGACAATTCCTTCGAGCTTAGGCTCCCTATCGAAGCTTCAAGATC 664
Query 1571 TGAAACTATGGCTGAATATGTTAGAAGGAGAGATCCCTCAGGAGCTCATGTATGTCAAGA 1630
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 665 TGAAACTATGGCTGAATATGTTAGAAGGAGAGATCCCTCACGAGCTCATGTATGTCAAGA 724
Query 1631 CCTTAGAGACTCTGATCCTCGACTTCAACGATTTAACCGGTGAAATCCCTT 1681
| |||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 725 CTTTAGAGACTCTGATTCTCGATTTCAACGACTTAACCGGTGAAATCCCTT 775
Score = 182 bits (98), Expect = 2e-44
Identities = 120/130 (92%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 814 GATGTTTCTCGCTGCGTGAATCTCGAGTTTCTCGATGTTTCCTCCAACAATTTCTCCACT 873
||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||| |
Sbjct 142 GATGTTTCTCGTTGCGTGACTCTCAAGTTTCTCGATGTTTCTTCCAACAATTTCTCCATT 201
Query 874 GGGATTCC-TTTCCTCGGAGATTGCTCT-GCTCTGCAACATCTTGACATCTCCGGGAACA 931
|||||||| ||| ||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 202 GGGATTCCATTT-CTCGGAGATTGCT-TGGCTTTGCAACATCTTGACATCTCCGGGAACA 259
Query 932 AATTATCCGG 941
||||||||||
Sbjct 260 AATTATCCGG 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157520294647
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5