BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39404.1
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490718 jgi|Araly1|490718|fgenesh2_kg.7__151__AT4G39404.1 209 7e-54
> Ahg490718 jgi|Araly1|490718|fgenesh2_kg.7__151__AT4G39404.1
Length=255
Score = 209 bits (113), Expect = 7e-54
Identities = 132/141 (94%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 135 CTTGCATGCACGGTGGCCCACGTGCTCCGTACCCACCACCGTCGCGCGTGTTCCGCTTGA 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTTGCATGCACGGTGGCCCACGTGCTCCGTACCCACCACCGTCGCGCGTGTTCCGCTTGA 175
Query 195 TAGCTACTCATCTCTTCTTT-TCCTTCTTCCACAGTTTCAGCGCGTTTGTTTATACGCGC 253
|||||||||||||||||| | || | || | ||||||| ||||||| |||||||||| ||
Sbjct 176 TAGCTACTCATCTCTTCTCTCTCATCCT-CTACAGTTTAAGCGCGTGTGTTTATACGTGC 234
Query 254 CTATGTCAGTGTCTTGTCTAG 274
|||||||||||||||||||||
Sbjct 235 CTATGTCAGTGTCTTGTCTAG 255
Score = 137 bits (74), Expect = 3e-32
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 22 gagagagatgagagagggaaagagaggaagagGTCAATTCGGCGGAGACAGGAAAGGGAC 81
|||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 34 GAGAGAGA-GAGAGAGAGAGAGAGAGGAAGAGGTCAATTCGGCGGAGACAGGAAAGGGAC 92
Query 82 GGCGGCCCACGGCGGAAGGAGACGTTG 108
||||||||||||||||||||||| |||
Sbjct 93 GGCGGCCCACGGCGGAAGGAGACCTTG 119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9729675195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5