BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39410.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490719 jgi|Araly1|490719|fgenesh2_kg.7__152__AT4G39410.1 1478 0.0
Ahg325325 jgi|Araly1|325325|fgenesh1_pm.C_scaffold_6000545 75.0 1e-12
> Ahg490719 jgi|Araly1|490719|fgenesh2_kg.7__152__AT4G39410.1
Length=952
Score = 1478 bits (800), Expect = 0.0
Identities = 908/959 (95%), Gaps = 12/959 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGCGATAAACCAAGGAATAAGCTTGTTTGATGAATCACAAACCGTCATAAACCCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGGTGCGATAAACCAAGGAATAAGCTTGTTTGATGAATCACAAACCATCATAAACCCT 60
Query 61 ATTAATACCAACCATCTAGGTTTCTTCTTCTCTTTCCCTAGTCACAGCACcttatcttca 120
|||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 61 ATTAATACTAACCATCTAGGTTTCTTCTTCTCTTTTCCTAGT--CA-CACCTTATCTTCA 117
Query 121 tcatcttcgtcgtcttcgtcttctccttcttctcttgtgtctccatttcttGGTCATAAC 180
|||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||| |||
Sbjct 118 TCATCTTCGTCGCCTTCGTCTTCTCCTTCTTCTCTTGGGTCTCTATTTCTAGGTCAAAAC 177
Query 181 TCCCTAAACTCCTTCCTTCATAATAACCCGTCTTCATTCATAAGTCATCCTCAAGATTCC 240
||| |||||||||||| |||||||||||| || |||||||||||||||||||||||| ||
Sbjct 178 TCCTTAAACTCCTTCCGTCATAATAACCCTTCCTCATTCATAAGTCATCCTCAAGATCCC 237
Query 241 ATCAATCTCATGACCAATCTCCCCGAAACCCTAATCTCGTCTTTGTCCTCATCAAAGCAA 300
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATCAATTTCATGGCGAATCTCCCCGAAACCCTAATCTCGTCTTTGTCCTCATCAAAGCAA 297
Query 301 AGGGACGATCATGATGGTTTTCTTAATCTCGATCATCATCGTCTTACCGGTAGTATTTCA 360
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 298 AAGGACGATCATGATGGTTTTCTTAATCTCGATCATCATCGTCTTACCGGTGGTATATCA 357
Query 361 TCCCAAAGACCCCTGTCAAATCCATGGGCATGGAGTTGTCAAGCGGGATACGGAAGCAGC 420
||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 TCCCAAAGACCTTTGCCAAATCCATGGGCATGGAGTAGTCAAGCGGGATACGGAAGCAGC 417
Query 421 CAGAAAAACAACCATGGAAGCGAgattgatgttgatgataatgatgatgaggttggcgat 480
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAGAAAAACAACCACGGTAGCGAGATTGATGTTGATGATAATGATGATGAGGTTGGCGAT 477
Query 481 ggtggtggcattaatgatgatgataatggtCGTCATC---ATCATCATGATACTCC-CAG 536
|||||||| |||||||||||||||||||||| ||||| ||||| |||||||||| | |
Sbjct 478 GGTGGTGGTATTAATGATGATGATAATGGTCATCATCATGATCATGATGATACTCCTC-G 536
Query 537 TCGTCATGATAAACATAACACAGCGTCATTAGGCGTAGTTTCTTCTCTGAAGATGAAGAA 596
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 537 TCGTCATGATAAACATAACACGGCGTCGTTAGGTGTAGTTTCTTCTCTGAAGATGAAGAA 596
Query 597 GCTTAAGACAAGAAGAAAAGTGAGGGAACCTCGGTTTTGCTTTAAGACACTTAGCGAGGT 656
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 597 GCTTAAGACAAGAAGAAAAGTGAGGGAGCCTCGGTTTTGCTTTAAGACTCTTAGCGAGGT 656
Query 657 TGATGTCTTAGATGATGGATATAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAAAACAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGATGTCTTAGATGATGGATATAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAAAACAC 716
Query 717 CCAACATCCCAGGAGCTATTACAGATGCACACAAGACAAGTGTAGAGTGAAGAAGAGAGT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCAACATCCCAGGAGCTATTACAGATGCACACAAGACAAGTGTAGAGTGAAGAAGAGAGT 776
Query 777 GGAGAGATTAGCAGATGACCCAAGAATGGTAATCACTACTTACGAAGGAAGACACCTTCA 836
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAGAGGTTAGCAGATGACCCAAGAATGGTAATCACTACTTACGAAGGAAGACACCTTCA 836
Query 837 ctctccttctaatcatctcgacgacgactctctctccacctctcacctgcaccctcctct 896
||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 837 CTCTCCTTCTAATCATCTCGACGACGACTCTCTCTCCTCCTCTCACC---ACTCTCCTCT 893
Query 897 ctccAACTTCTTCTGGTGATTTCAATTTGTATTTCCATT-GAATCAACCAATATCAAAA 954
|||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 894 CTCCAACTTCTTCTGGTGATTTCAATTTGTTTTTCCTTTTGAATCAACCAATATTAAAA 952
> Ahg325325 jgi|Araly1|325325|fgenesh1_pm.C_scaffold_6000545
Length=948
Score = 75.0 bits (40), Expect = 1e-12
Identities = 75/90 (83%), Gaps = 9/90 (10%)
Strand=Plus/Plus
Query 662 TCTTAGATGATGGATATAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAA---AACACCC 718
|||| || ||||| || |||||||||||||||||||||||||||||||| || |||
Sbjct 732 TCTT-GACGATGGCTACAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAGGGTAAT-CCC 789
Query 719 AACATCCCAGGAGCTATTACA-GATGCACA 747
|| ||| ||||||||||||| | ||||||
Sbjct 790 AA--TCCAAGGAGCTATTACAAG-TGCACA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5