BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39460.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888153 jgi|Araly1|888153|Al_scaffold_0007_139 1635 0.0
Ahg888319 jgi|Araly1|888319|Al_scaffold_0007_305 457 1e-127
Ahg903863 jgi|Araly1|903863|Al_scaffold_0003_991 453 1e-126
> Ahg888153 jgi|Araly1|888153|Al_scaffold_0007_139
Length=978
Score = 1635 bits (885), Expect = 0.0
Identities = 947/978 (97%), Gaps = 0/978 (0%)
Strand=Plus/Plus
Query 111 ATGGCTCCTCTTACTCTCTCCGTTGATGTGAAGAGCTCTTCAGCGACCTCTCATGATGTT 170
|||||||||||||||||||| ||||||||||||||||||||||| || |||| |||||||
Sbjct 1 ATGGCTCCTCTTACTCTCTCTGTTGATGTGAAGAGCTCTTCAGCCACTTCTCCTGATGTT 60
Query 171 TCGAAGAGGGTAATGCAGAGTTCACAGCTCAAAATAAACAAAGGCTTTTTTGCATCTGTT 230
|| |||||||||||||| ||| ||||||||||||| | | ||||||||||||||||||||
Sbjct 61 TCCAAGAGGGTAATGCACAGTCCACAGCTCAAAATGAGCCAAGGCTTTTTTGCATCTGTT 120
Query 231 AATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGAGGGGTTTATAGCA 290
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 AATACGCAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGAGGGATTTATAGCA 180
Query 291 GGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACT 240
Query 351 AGACTTCAGGCAGCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTA 410
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AGACTTCAGGCAGCTCGTGGAGGTGGGAAAATTGTTTTGAAGGGTCTTTATTCAGGATTA 300
Query 411 GCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTTGGAGTTTATGAACCC 360
Query 471 ACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGACT 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGACA 420
Query 531 GCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAGAGGTTGTGAAG 590
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GCAGGGGCCATCGGTGGACTTGCTGCCTCTCTGATTCGAGTGCCTACAGAGGTTGTGAAG 480
Query 591 CAAAGAATGCAGACCGGACAGTTTACATCAGCTCCCAGTGCTGTTCGAATGATTGCATCA 650
|| ||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||
Sbjct 481 CAGAGAATGCAGACCGGACAGTTTACATCAGCCCCCAATGCTGTTCGACTTATTGCATCA 540
Query 651 AAAGAGGGATTTAGGGGTCTCTATGCAGGATACCGGTCCTTCCTTTTGCGAGATTTGCCA 710
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 541 AAAGAGGGATTTAGGGGTCTTTATGCAGGATATCGGTCCTTCCTTTTGCGAGATTTGCCG 600
Query 711 TTTGATGCTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCGCG 770
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 601 TTTGATGCTATACAGTTCTGCATATATGAGCAGCTATGCTTGGGGTATAAAAAAGCAGCG 660
Query 771 CGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTGGTGCTCTGACC 830
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 CGTAGAGACCTTAGTGATCCTGAGAACGCTCTAATCGGTGCCTTTGCTGGTGCTCTGACC 720
Query 831 GGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGGGATCAGCC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGGGATCAGCC 780
Query 891 AAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCT 840
Query 951 GCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGATCAATCTTC 1010
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGTTCAATCTTC 900
Query 1011 TTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAATACGGTTAAA 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 TTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAATACGGTCAAA 960
Query 1071 GAAACCAAAGAAGAATAA 1088
||||||||||| ||||||
Sbjct 961 GAAACCAAAGAGGAATAA 978
> Ahg888319 jgi|Araly1|888319|Al_scaffold_0007_305
Length=270
Score = 457 bits (247), Expect = 1e-127
Identities = 255/259 (98%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 821 TGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCA 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCA 71
Query 881 GGGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGA 940
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 72 GGGATCAGCCAAACAATATCAAAGAATCGTTGACTGTGTTCAAACAATTGTAAGGGAGGA 131
Query 941 AGGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGG 1000
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AGGAGTTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGG 191
Query 1001 ATCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAA 1060
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 TTCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAA 251
Query 1061 TACGGTTAAAGAAACCAAA 1079
|||||||||||||||||||
Sbjct 252 TACGGTTAAAGAAACCAAA 270
> Ahg903863 jgi|Araly1|903863|Al_scaffold_0003_991
Length=261
Score = 453 bits (245), Expect = 1e-126
Identities = 255/260 (98%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 822 GCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG 881
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCTGACCGGAGTAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG 60
Query 882 GGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAA 941
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GGATCAACCAAACAATATCAAAGAATCGTTGACTGTGTTCAAACAATTGTAAGGGAGGAA 120
Query 942 GGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGA 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGT 180
Query 1002 TCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAAT 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAAT 240
Query 1062 ACGGTTAAAGAAACCAAAGA 1081
||||||||||||||||||||
Sbjct 241 ACGGTTAAAGAAACCAAAGA 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5