BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39470.1
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490724 jgi|Araly1|490724|fgenesh2_kg.7__157__AT4G39470.1 1744 0.0
> Ahg490724 jgi|Araly1|490724|fgenesh2_kg.7__157__AT4G39470.1
Length=1158
Score = 1744 bits (944), Expect = 0.0
Identities = 1101/1173 (94%), Gaps = 26/1173 (2%)
Strand=Plus/Plus
Query 1 GCAAGATGTGTTCAATCGGAGTAAC-TGCTCTCTGTTCTCCGGCTAAATTTCATCATCGC 59
|||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 GCAAAATGTGTTCAATCGGAGT-ACTTGCTCTCTGTTCTCCGGCTAAATTTCATCATCGC 59
Query 60 CGGGAACAATCACTGATTTTTACTCCGACCCATTTGCGTAATCCAAATGGGTTCCAATTT 119
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 60 CGGGAACAATTGCTGATTTTTACTCCGACCCATTTGCGTTATCCAAATGGGTTTCAATTT 119
Query 120 CGGTGGAGAAAGTCCCGACCTTTCGCTCCCAGACTCGCCCAACCCGACAATTTCGCTCCG 179
||||||||||||||||||||||||| |||| | | ||| |||||||||||||
Sbjct 120 CGGTGGAGAAAGTCCCGACCTTTCG--CCCA-A-T--------CCGTCAATTTCGCTCCG 167
Query 180 -CC-GCTC-C--C-T-CTC--ATACGCTCTTCGACGTCTCTTCTTTCTTCCAAGGATTTC 230
|| || | | | ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 168 TCCTTTTCACAACTTCCTCTTATAGGCTCTTCGACGTCTCTTCTTTCTTCCAAGGATTTC 227
Query 231 GTTCAGATGCTGGCGAGAAAAGCCGCCATTTTACTTGTTGGGTCGTTTGTCTTTCTAGGG 290
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 228 GTTCAGATTCTGGCGAGAAAAGCCGCGATTTTACTTGTTGGGTCGTTTGTCTTTCTAGGG 287
Query 291 TTCTGCTCTTCGAAACCTGCTTTAGCGCTACCCACTGCAACTGTAGTCTCCCAGGCAGAG 350
||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 288 TTCTGTTCTTCGAAACCTGCTTTAGCGCTACCCACTGCAACTGTCGTCTCTCAGGCAGAG 347
Query 351 TTAGAGGACGAGAAAATGTTCGAGAAGCTTCTGGAAAATGAGCCAGAGAACATGGAGGCT 410
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 348 TTAGAGGACGAGAAAATGTTCGAGAAGCTTCTGGAAAGTGAGCCAGAGAACATGGAGGCT 407
Query 411 ATGAAGGCTGTTGTGTATAAGAAGATGAGGAGAGGGAAAAATGAAGATGCTGTGAAATAT 470
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 408 ATGAAGGCTGTTGTGTATAAGAAGATGAGGAGAGGTAAAAATGAAGATGCTGTGAAATAT 467
Query 471 GTTGAGAAGCTGATGAAATTAGAGCCTCATGAAGTTGAGTGGAAGCTTTTAGAAGCGCTT 530
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 468 GTGGAGAAGCTGATGAAATTAGAGCCTCATGAAGTTGAATGGAAGCTTTTAGAAGCGCTT 527
Query 531 TGCTATGAAACAATGGGGGAATTGAGCAAAGCCAAGAGATTGTATAAGGATATTCTCAAA 590
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TGTTATGAAACGATGGGAGAATTGAGCAAAGCCAAGAGATTGTATAAGGATATTCTCAAA 587
Query 591 GAACAACCTCTTTTGATCAGAGCTTTGCACGGTCTTGCTATGGTAATGCATAAGACTCAT 650
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GAACAACCTCTGTTGATCAGAGCTTTGCACGGTCTTGCTATGGTAATGCATAAGACTCAT 647
Query 651 GACACCTCTGTCTTTGATATGCTCATTGAAGCTATGGAAGTTGCTCGACAAGGAAACCGA 710
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 648 GACACCTCTGTCTTTGATATGCTCATGGAAGCTATGGAAGTTGCTCGACAAGGGAACCGA 707
Query 711 GTAACCGAGGAGAGAAACATACAAGTCTTGATTGGTCAAATGCATATTGTGGAGGGTCAA 770
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 708 GTAACCGAGGAGAGAAACATTCAAGTCTTGATTGGTCAAATGCATATTGTGCAGGGTCAA 767
Query 771 TTTGAAGAAGGTCTAAAGATATTTCAACAGATGGTGAATGATAATCCTCGAGATTTTCGA 830
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 768 TTTGAAGAAGGTCTAAAGATATTTCAACAGATGGTAAATGATAACCCTCGAGATTTTCGA 827
Query 831 CCTTACCTTTGCCAGGGCATAGTGTATAGCTTAATGGATAAAAAAGAGGAAGCAGCACAA 890
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 828 CCTTATCTTTGCCAGGGCATAGTCTATAGCTTAATGGATAAAAAAGAGGAAGCAGCTCAA 887
Query 891 CAGTTTGAGATCTATTGGAGTCTTGTACCTGGAGAATTCCCACAAAAGGGATTTCTCGAC 950
|||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 888 CAGTTTGAGAACTATTGGAGCCTTGTACCTGAAGAATTCCCACAAAAGGGATTTCTCGAC 947
Query 951 GATGTTGCCTTGGCTGCTCAAGCAAAATCCCGAGAACGGCTTCAAAACACATTCAAAGCT 1010
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 948 GATGTTGCCTTGGCTGCTCAAGCCAAATCCCGAGAACGACTTCAAAACACATTCAAAGCT 1007
Query 1011 AAATTTACTCAGGGGAGATAATTGAAAGCTTCATCAGCAGTTCAAAGTTTTCTTCTTGAG 1070
|||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 1008 AAATTTACTCAGGGGAAATAATTGAT-GCTTCATCATCAGTTGGAAGTTTTCTTCTTGAG 1066
Query 1071 GTTTGCAGTGCCCACTCATGTAATCACA-TTTTGGTCATGTTACAGTTACATGACATATG 1129
|||||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 1067 GTTTGCAGTGCC-ACTCATGTAATCACACTTTTGGTCATGTTGCAGCTACATGACATATG 1125
Query 1130 TTTATAAAGAATATCAGGTATGAAATGTTAACA 1162
|||||||||||| ||| |||||||||||||||
Sbjct 1126 GTTATAAAGAATACCAGATATGAAATGTTAACA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52069364915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5