BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39480.1
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943924 jgi|Araly1|943924|scaffold_700153.1 2499 0.0
Ahg943925 jgi|Araly1|943925|scaffold_700154.1 1650 0.0
Ahg481190 jgi|Araly1|481190|fgenesh2_kg.4__250__AT2G23180.1 1474 0.0
> Ahg943924 jgi|Araly1|943924|scaffold_700153.1
Length=1589
Score = 2499 bits (1353), Expect = 0.0
Identities = 1507/1582 (95%), Gaps = 7/1582 (0%)
Strand=Plus/Plus
Query 292 TTCTCACTAATGGCTTTGGTCAGCTTACTTGAAATCTCCATTGCTTTCTTTTGTTTCCTT 351
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 13 TTCTCCCTAATGGCTTTGGTCAGCTTACTCGAAATCTCCATTGCTTTCTTTTGTTTCCTT 72
Query 352 ATCTTTCGAATTTTCCTGATCAGCAAGAAACCACACCGTTCATTTCTCACAAACTGGCCG 411
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 73 ATCTTTCAAATTTTCCTGATCAGCAAGAAACCGCACCGTTCATTTCTCACAAACTGGCCG 132
Query 412 CTCCTGGGCATGCTTCCGGGTTTACTTACCGTGCTCCCTCGAGTTTACGACTTTATAACC 471
||||| || |||||||||||||||||| || ||||||||| || || |||||||||||
Sbjct 133 CTCCTCGGTATGCTTCCGGGTTTACTTCCCCAGCTCCCTCGTGTCTATGACTTTATAACT 192
Query 472 GAGGTTCTTGAGGACGGCAACTTAAACTATCTTTTCATAGGCCCTTTTTTAGGGGGCATC 531
||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 193 GAGGTTCTTGAGGACGGGAACTTAAACTATCTTTTCAAAGGACCTTTTTTGGGGGGCATC 252
Query 532 GACATGTTGTTCACCGTTGATCCTGCTAATATCCATCACATCATGAGCTCAAACTTTGCG 591
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 253 GACATGTTGTTCACCGTTGATCCTGCTAATATCCACCACATCATGAGCTCAAACTTTGCG 312
Query 592 AATTACCCGAAAGGAACCGAATTCAAGAAGTTATTTGACGTTTTGGGAGATGGGATTTTC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 AATTACCCGAAAGGAACCGAATTCAAGAAGTTATTTGACGTTTTGGGAGATGGGATTTTC 372
Query 652 AACGCGGATTCAGATTTGTGGAAGGATCTAAGGAAATCTTCTCAAAGCATGATGAATCAT 711
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 373 AACGTGGATTCAGAGTTGTGGAAGGATCTAAGGAAATCTTCTCAAAGCATGATGAATGAT 432
Query 712 CCCGATTTTCAAAGGTTTTCATTAGCTACAAGCTTGAGTAAGCTAGAGAAAGGGCTTGTG 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CCCGATTTTCAAAGGTTTTCATTAGCTACAAGCTTGAGTAAGCTAGAGAAAGGGCTTGTT 492
Query 772 CCACTTCTTGATCATGTTGCTAAAGAGAAACTCGTCGTGGACTTACAAGATGTTTTCCAA 831
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CCACTTCTTGATCATGCTGCTAAAGAGAAACTCGTCGTGGACTTACAAGATGTTTTCCAA 552
Query 832 AGATTCACGTTTGACACTACCTTTGTTTTAGCAACCGGGTATGATCCAGGTTGTCTCTCG 891
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 553 AGATTCACGTTTGACACTACGTTTGTTTTAGCAACCGGATATGATCCAGGTTGTCTCTCG 612
Query 892 GTGGAAATGCCGGAAATCGAGTTTGCAAGAGCCTTAGACGATGCAGAGGAAGCTATTTTC 951
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 613 GTCGAAATGCCGGAAATCGAGTTTGCAAGAGCTTTAGACGATGCAGAGGAAGCCATTTTC 672
Query 952 TACAGACATTTCAAGCCGGAGGTGGTGTGGAAGATGCAAAGATTGATTGGGGTTGGAGCT 1011
||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct 673 TACAGACATGTCAAGCCGGAGATGGTGTGGAAGATGCAAAGATGGATTGGGGTTGGAGAT 732
Query 1012 GAGTTGAAGCTGAAAAGAGCTCACGCGATTTTCGATCGTGTTTGCTCTAAGTGCATAGCT 1071
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 733 GAGTTGAAGCTGAAAAGAGCTCACGCGGTTTTCAATCGTGTTTGCTCTGAGTGCATAGCT 792
Query 1072 TCTAAGAGAGATGAGATCAGCCAAGGG-ATTGATTCTTCTTCTTCTAAAGATTTGTTGAT 1130
||||||||||||||||||| || |||| | | ||||||||||||||| |||||||||||
Sbjct 793 TCTAAGAGAGATGAGATCAACCGAGGGGACGG-TTCTTCTTCTTCTAATGATTTGTTGAT 851
Query 1131 GTCTTCTATAAATGTTGACACGACTAAGTACAAGTTGTTGAATCCAAGTGATGACAGATT 1190
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GTCTTCTTTAAATGTTGACACGACTAAGTACAAGTTGTTGAATCCAAGTGATGACAGATT 911
Query 1191 CCTTAGAGACACAATCTTGTCCTTCATGTTAGCTGGTAGAGACACAACAGGCTCAGCGCT 1250
|||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 912 CCTTAGAGACACAATCCTGTCCTTCATGTTAGCTGGCAGAGACACGACAGGCTCAGCGCT 971
Query 1251 CACTTGGTTCTTCTGGCTTCTATGCAATAACCAAGAAGCCATGACCAAGATTCGTCAAGA 1310
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 972 CACTTGGTTCTTCTGGCTTCTATGCAAAAACCAAGAAGCCATGGCCAAGATTCGTCAAGA 1031
Query 1311 AATCAACACAAATCTATTTCCAAGAAACAAGACCGACGACGGTTCTGTTTCTTATGATTC 1370
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1032 AATCAACACAAATCTATTTCCAAGAAACAAGA---ATGACGGTTCTGTTTCTTATGATTC 1088
Query 1371 TGATTCATTCAATCCCCAAGAGG-TAAAGAAGTTGGTGTATTTACACGGCGCGGTTTGTG 1429
|||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 1089 TGATTCATTCAATCCCCAAG-GGATAAAGAAGTTGGTGTATTTACACGGCGCAATTTGTG 1147
Query 1430 AAGCCCTCAGGCTCTATCCACCTGTTCCCTTTAACCACAAGTCTCCTGCTAAACCCGACG 1489
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1148 AAGCCCTCAGGCTCTATCCACCTGTTCCCTTTAACCACAAGTCTCCTACTAAACCCGACG 1207
Query 1490 TGCTTCCAAGCGGCCACAAAGTCAAGGCCAATTCGAGGATTTTGTTCTGTCTTTACTCAT 1549
| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 1208 TCCTTCCAAGCGGCCACAAAGTCAAAGCCAATTCGAAAATATTGTTCTGTCTTTACTCAT 1267
Query 1550 TAGGGAGAATGAAATCGGTTTGGGGAGAAGATGCAATGGAATTTAAACCGGAGAGATGGA 1609
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1268 TAGGGAGAATGAAATCGGTTTGGGGAGAAGATGCATTGGAATTCAAACCGGAGAGATGGA 1327
Query 1610 TTTCTGAGAGTGGAAGATCGGTACATGAGCCATCTTATAAGTTCCTATCGTTTAACGCCG 1669
||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |
Sbjct 1328 TTTCTGAGAGTGGAAGATCGGTACACGAGCCATCTTATAAGTTCTTATCATTTAACGCAG 1387
Query 1670 GTCCAAGAACTTGTTTGGGGAAAGAAGTGGCTATGACGCAAATGAAGACAGTGGCTGTGA 1729
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1388 GTCCAAGAACTTGTTTGGGGAAAGAAGTGGCTATGATGCAAATGAAGACAGTGGCTGTGA 1447
Query 1730 AAATCATACAAAATTATGACATTAATGTCGTTGAAGGGCACAAGATCAAGCCAGCTCCTT 1789
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 AAATCATACAAAACTATGAGATTAATGTCGTTGAAGGGCACAAGATCAAGCCAGCTCCTT 1507
Query 1790 CGGTTATTCTCCACATGAAGCATGGTCTTAAAGTCACTGTCTCTAAAAGATGTTTGTCTT 1849
||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1508 CGGTTATCCTCCACATGAAGCATGGTCTTAAAGTCACAGTCTCTAAAAGATGTTGGTCTT 1567
Query 1850 GAATGTTTTAACTAGAATGTAG 1871
||||||||||||||||| ||||
Sbjct 1568 GAATGTTTTAACTAGAAAGTAG 1589
> Ahg943925 jgi|Araly1|943925|scaffold_700154.1
Length=1601
Score = 1650 bits (893), Expect = 0.0
Identities = 1365/1589 (86%), Gaps = 47/1589 (3%)
Strand=Plus/Plus
Query 298 CTAATGGCTTTGGTCAGCTTACTTGAAATCTCCATTGCTTTCTTTTGTTTCCTTATCTTT 357
|||||||||||| | ||||| |||||||||||||||||||||||||||| || ||||
Sbjct 19 CTAATGGCTTTGATAAGCTTGTTTGAAATCTCCATTGCTTTCTTTTGTTTTCTCCTCTTC 78
Query 358 CGA-ATTTTCCTGATCAGCAAGAAACCACACCGTTCATTT-CTC-ACAAACTGGCCGCTC 414
||| |||| | |||||| ||||||||| |||||| | | | | | ||||||||||| ||
Sbjct 79 CGATATTT-CTTGATCAACAAGAAACCTCACCGT-C-TGTGCCCCACAAACTGGCCATTC 135
Query 415 CTGGGCATGCTTCCGGGTTTACTTACCGTGCTCCCTCGAGTTTACGACTTTATAACCGAG 474
|| || ||| |||||||||| || || | ||| ||| |||||||||||||||||||||
Sbjct 136 CTTGGTATGATTCCGGGTTTGCTCGTCGAGATCCATCGTGTTTACGACTTTATAACCGAG 195
Query 475 GTTCTTGAGGACGGCAACT-TAAACTATCTTTTCATAGGCCCTTTTTTAGGGGGCATCGA 533
|||| |||| | ||| | ||| ||||| || ||||||||| | ||| | | ||||
Sbjct 196 ATTCTCGAGGTCA-CAAATCTAACCTATCCTTGCATAGGCCCGTGTTTCGCAAACCTCGA 254
Query 534 CATGTTGTTCACCGTTGATCCTGCTAATATCCATCACATCATGAGCTCAAACTTTGCGAA 593
|||| || |||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 255 CATGCTGGTCACGGTTGATCCTGCTAATATCCACCACATCATGAGCTCAAACTTCGCGAA 314
Query 594 TTACCCGAAAGGAACCGAATTCAAGAAGTTATTTGACGTTTTGGGAGATGGGATTTTCAA 653
|||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 315 CTACCCGAAAGGACCCGAATTCAAGAAGTTATTCGACATTTTGGGAGACGGGATTTTCAA 374
Query 654 CGCGGATTCAGATTTGTGGAAGGATCTAAGGAAATCTTCTCAAAGCATGATGAATCA-TC 712
|| ||||| || |||||||| ||||| |||||||| ||||||||||||||| | | ||
Sbjct 375 TGCAGATTCGGAATTGTGGAAAGATCTGAGGAAATCAGCTCAAAGCATGATGA-TGAATC 433
Query 713 CCGATTTTCAAAGGTTTTCATTAGCTACAAGCTTGAGTAAGCTAGAGAAAGGGCTTGTGC 772
|||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 434 CCGAGTTTCAAAAGTTTTCATTAGCTACAAGCTCAAATAAGCTAGAGAAAGGGCTTGTCC 493
Query 773 CACTTCTTGATCATGTTGCTAAAGAGAAACTCGTCGTGGACTTACAAGATGTTTTCCAAA 832
|||||||||| ||||||||||||||||||||||| |||||||| ||||| | |||||||
Sbjct 494 CACTTCTTGACCATGTTGCTAAAGAGAAACTCGTTGTGGACTTGCAAGACATGTTCCAAA 553
Query 833 GATTCACGTTTGACACTACCTTTGTTTTAGCAACCGGGTATGATCCAGGTTGTCTCTCGG 892
|||||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 554 GATTCACGTTCGACACCACATTTGTTTTAGCGACCGGGTATGATCCAGGCTGTCTCTCCG 613
Query 893 TGGAAATGCCGGAAATCGAGTTTGCAAGAGCCTTAGACGATGCAGAGGAAGCTATTTTCT 952
| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 614 TCGAAATGCCGGAAGTCGAGTTTGCAAGAGCTTTAGACGATGCAGAGGAAGCTATTTTCT 673
Query 953 ACAGACATTTCAAGCCGGAGGTGGTGTGGAAGATGCAAAGATTGATTGGGGTT-GGAGCT 1011
||||||| |||| || ||| | |||||| | ||||| | ||| ||||| || |||| |
Sbjct 674 TCAGACATATCAAACCAGAGATCTTGTGGAGGCTGCAAGGCTTGCTTGGG-TTAGGAGAT 732
Query 1012 GAGTTGAAGCTGAA-AAGAGCTCACGCGATTTTCGATCGTGTTTGCTCTAAGTGCATAGC 1070
||| |||| ||| || ||||| ||||| ||| |||||||||||||| |||| ||||||
Sbjct 733 GAGAAGAAGATGACGAA-AGCTCGCGCGACTTTAGATCGTGTTTGCTCCAAGTACATAGC 791
Query 1071 TTCTAAGAGAGATGAGATCAGCCAAGGGATTGAT--TCTTC-TTCT--T-CTAAAGATTT 1124
| | |||||||||||| | |||| |||| | | | || |||| | ||||||||||
Sbjct 792 TACAAAGAGAGATGAGGTAAGCCGTGGGACTAACAATGTTGATTCTCATTCTAAAGATTT 851
Query 1125 GTTGATGTCTT-CTATAAATGTTG-ACACGACTAAGTACAAGTTGTTGAATCCAAGTGAT 1182
| ||| ||||| | || ||| ||| | ||||| |||||||||||| ||||||||||||||
Sbjct 852 GCTGACGTCTTAC-ATGAAT-TTGGATACGACCAAGTACAAGTTGCTGAATCCAAGTGAT 909
Query 1183 GACAGATTCCTTAGAGACACAATCTTGTCCTTCATGTTAGCTGGTAGAGACACAACAGGC 1242
|| |||||||| ||||||||||||||| ||||||||||||| ||| ||||||| |||||
Sbjct 910 GAAAGATTCCTCAGAGACACAATCTTGACCTTCATGTTAGCGGGTCGAGACACGACAGGA 969
Query 1243 TCAGCG-CTCACTTGGTTCTTCTGGCTTCT-ATGCAATAACCAAGAAGCCAT-GACCAAG 1299
|| | | ||||||||||||||||||||||| || || | || ||||| ||| | |||||
Sbjct 970 TCTG-GACTCACTTGGTTCTTCTGGCTTCTCATT-AAGACCCCAGAAGTCATTG-CCAAG 1026
Query 1300 ATTCGTCAAGAAATCAACACAAATCTATTTCCAAGAAACAAG---ACCGAC-GACGGTTC 1355
|||||||||||||| ||||||||||| |||| ||||| |||| | | | || | |||
Sbjct 1027 ATTCGTCAAGAAATAAACACAAATCTGTTTCAAAGAAGCAAGGTTAATG-CTGATGCTTC 1085
Query 1356 TGTTTCTTATGATTCTGATTCATTCAATCCCCAAGAGGTAAAGAAGTTGGTGTATTTACA 1415
|| | |||| |||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 1086 TGACAATAATGACTCTGATTCATTCAATCCCCAAGAGTTAAAGAAATTGGTGTATCTACA 1145
Query 1416 CGGCGCGGTTTGTGAAGCCCTCAGGCTCTATCCACCTGTTCCCTTT-AACCACAAGTCTC 1474
||||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||
Sbjct 1146 CGGCGCGATTTGTGAAGCCCTCAGACTCTATCCACCTGTTCCCTTTCAAC-ACAAGTCTC 1204
Query 1475 CTGCTAAACCCGACGTGCTTCCAAGCGGCCACAAAGTCAAGGCCAATTCGAGGATTTTGT 1534
|| | ||||| ||||| |||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct 1205 CTACAAAACCAGACGTTCTTCCAAGTGGACACAAAGTCGACGCCAACTCGAAGATTTTGT 1264
Query 1535 TCTGTCTTTACTCATTAGGGAGAATGAAATCGGTTTGGGGAGAAGATGCAATGGAATTTA 1594
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1265 TCTGTCTTTACTCATTAGGGAGAATGAAATCGGTTTGGGGAGAAGATGCATTGGAATTCA 1324
Query 1595 AACCGGAGAGATGGATTTCTGAGAGTGGAAGAT-CGGTACATGAGCCATCTTATAAGTTC 1653
|||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 1325 AACCGGAGAGATGGATTTCTGAGAGTGGAA-ATTCGGTACACGAGCCATCTTATAAGTTC 1383
Query 1654 CTATCGTTTAACGCCGGTCCAAGAACTTGTTTGGGGAAAGAAGTGGCTATGACGCAAATG 1713
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TTATCGTTTAACGCTGGTCCAAGAACTTGTTTGGGGAAAGAAGTGGCTATGACGCAAATG 1443
Query 1714 AAGACAGTGGCTGTGAAAATCATACAAAATTATGACATTAATG-TCGTTGAAGGGCA-CA 1771
|||||||||||||||||||||||||| |||||||| || || | ||||||||||||| ||
Sbjct 1444 AAGACAGTGGCTGTGAAAATCATACAGAATTATGAGATGAA-GATCGTTGAAGGGCAACA 1502
Query 1772 AGATCAAGCCAGCTCCTTCGGTTATTCTCCACATGAAGCATGGTCTTAAAGTCACTGTCT 1831
| ||| ||||||||||||| || |||||||||||||||||||||||||||||||| || |
Sbjct 1503 A-ATCGAGCCAGCTCCTTCTGTAATTCTCCACATGAAGCATGGTCTTAAAGTCACAGT-T 1560
Query 1832 -CTAAAAGATGTTTG-TCTTGAATGTTTT 1858
|||| ||||||||| | |||| ||||||
Sbjct 1561 ACTAAGAGATGTTTGGT-TTGATTGTTTT 1588
> Ahg481190 jgi|Araly1|481190|fgenesh2_kg.4__250__AT2G23180.1
Length=1648
Score = 1474 bits (798), Expect = 0.0
Identities = 1333/1585 (84%), Gaps = 61/1585 (4%)
Strand=Plus/Plus
Query 284 TTTCTCAATTCTCACTAATGGCTTTGGTCAGCTTACTTGAAATCTCCATTGCTTT-C-TT 341
||||||||||||| ||||||||| | | | |||||||||| |||| ||| |||| | ||
Sbjct 21 TTTCTCAATTCTCTCTAATGGCTCTAATAACCTTACTTGAAGTCTCAATTTCTTTACTTT 80
Query 342 TTGTTTCCTTATCTTT-CGAAT-TTTCCTGATCAGCAAGAAACCACACCGTTCATTTCTC 399
|| | ||||| |||| || || || | |||| ||||||||||| || ||||| ||||||
Sbjct 81 TTATCTCCTT-CCTTTACGGATATTGCTTGATTAGCAAGAAACCTCATCGTTCGTTTCTC 139
Query 400 ACAAACTGGCCGCTCCTGGGCATGCTTCCGGGTTTACTTACCGTGCTCCCTCGAGTTTAC 459
|| ||||||||| |||| || ||||||||||||||||| | | ||||||| |||||
Sbjct 140 ACTAACTGGCCGTTCCTCGGTATGCTTCCGGGTTTACTCGTGGAGATCCCTCGTGTTTAT 199
Query 460 GACTTTATAACCGAGGTTCTTGAGGACGGC-AACTTAAAC-TATCTTTTCATAGGCCCTT 517
|||| | |||||||| |||| |||| | | ||||| ||| |||| ||||| ||| || |
Sbjct 200 GACTATGTAACCGAGCTTCTCGAGG-CCTCAAACTT-AACTTATCCTTTCAAAGGTCCGT 257
Query 518 TTTTAGGGGG-CATCGACATGTTGTTCACCGTTGATCCTGCTAATATCCATCACATCATG 576
||| ||||| | ||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 258 ATTTCGGGGGTC-TCGACATGTTGATCACCGTTGATCCGGCTAATATCCACCACATCATG 316
Query 577 AGCTCAAACTTTGCGAATTACCCGAAAGGAACCGAATTCAAGAAGTTATTTGACGTTTTG 636
||||||||||| |||||||||||||||||| |||| ||||||||| |||| || ||||||
Sbjct 317 AGCTCAAACTTCGCGAATTACCCGAAAGGATCCGAGTTCAAGAAGATATTCGATGTTTTG 376
Query 637 GGAGATGGGATTTTCAACGCGGATTCAGATTTGTGGAAGGATCTAAGGAAATCTTCTCAA 696
|||||||| |||||||| || ||||| || || ||||| |||||||||||||| |||||
Sbjct 377 GGAGATGGCATTTTCAATGCAGATTCTGAGTTATGGAAAGATCTAAGGAAATCAGCTCAA 436
Query 697 AGCATGATGAATCATCCCGATTTTCAAAGGTTTTCA-TTAGCTACAAGCTTGAGTAAGCT 755
|||||||||| ||||| ||||||||||||||| || | || |||||| ||||||||||
Sbjct 437 AGCATGATGACTCATCAAGATTTTCAAAGGTTTACACTAAG-AACAAGCATGAGTAAGCT 495
Query 756 AGAGAAAGGGCTTGTGCCACTTCTTGATCATGTTGCTAAAG-AGAAACTCGTCG-TGGAC 813
|||||||||||| || |||||||||||| | |||||| || ||||| | |||| | |||
Sbjct 496 AGAGAAAGGGCTCGTCCCACTTCTTGATTACGTTGCT-GAGAAGAAAATAGTCGCT-GAC 553
Query 814 TTACAAGATGTTTTCCAAAGATTCACGTTTGACACTACCTTTGTTTTAGCAACC-GGGTA 872
||||||||||| ||||||||||| ||||| |||||| | ||| ||||||| ||| ||||
Sbjct 554 TTACAAGATGTGTTCCAAAGATTTACGTTCGACACTTCGTTTATTTTAGCGACCGGGGT- 612
Query 873 TGATCCAGGTTGTCTCT-CG-GTGGAAATGCCGGAAATCGAGTTTGCAAGAGCCTTAGAC 930
||||||||||||||| | || | ||||||||| ||||||||||||| ||||| ||||||
Sbjct 613 TGATCCAGGTTGTCT-TGCGACT-GAAATGCCGCAAATCGAGTTTGCTAGAGCTTTAGAC 670
Query 931 GATGCAGAGGAAGCTATTTTCTACAGACATTTCAAGCCGGAGGTGGTGTGGAAGATGCAA 990
|| ||||||| ||| ||||||| ||| ||| ||||||||||| |||| ||||||||||||
Sbjct 671 GAAGCAGAGGCAGCAATTTTCTTCAGGCATGTCAAGCCGGAGATGGTTTGGAAGATGCAA 730
Query 991 AGATTGATTGGGGTTGGAGCTGAGTTGAAGCTGA-AAAGAGCTCACGCGATTTTCGATCG 1049
|||| |||||| |||||| |||||||||| ||| ||| ||||||| |||||||||| ||
Sbjct 731 GGATTTATTGGGTTTGGAGATGAGTTGAAGATGAGAAA-AGCTCACTCGATTTTCGACCG 789
Query 1050 TGTTTGCTCTAAGTGCATAGCTTCTAAGAGAGATGAGATCAGCCAA--GGG--ATTGA-T 1104
||||||||||| ||||||||||||||||||||||| || | | || ||| ||| |
Sbjct 790 AGTTTGCTCTAAATGCATAGCTTCTAAGAGAGATGAAAT-AACTAATGGGGTTATTAACA 848
Query 1105 TC--TTCTTCTTCTAAAGATTTGTTGATGTCTT-CTATAAATGTTGACACGACTAAGTAC 1161
|| |||||||||||||||||||||||||||| | || | ||| || ||||| ||||||
Sbjct 849 TCGACTCTTCTTCTAAAGATTTGTTGATGTCTTAC-ATGAGTGTGGATACGACCAAGTAC 907
Query 1162 AAGTTGTTGAATCCAAGTGATGACAGATTCCTTAGAGACACAATCTTGTCCTTCATGTTA 1221
||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||
Sbjct 908 AAGTTGTTGAATCCAAGTGATGACAAATTCCTTAGAGACATGATCTTAAGCTTCATGATA 967
Query 1222 GCTGGTAGAGACACAACAGGCTCAGCGCTCACTTGGTTCTTCTGGCTTCTATGCAATAA- 1280
|||||||||||||| |||||||| || |||||||||||||| |||||||| | ||| ||
Sbjct 968 GCTGGTAGAGACACCACAGGCTCTGCTCTCACTTGGTTCTTTTGGCTTCTCTCCAAGAAC 1027
Query 1281 CCAAGAAGCCATGACCAAGATTCGTCAAGAAATCAACACAAATCTATTTCCAAGAAACAA 1340
|||| ||||||| ||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 1028 CCAA-AAGCCATAACCAAGATTCGTCAAGAAATCAACACAAAACTATCGCCAAG-----A 1081
Query 1341 GACCGACGACGGTTCTGTTTCTTATGATTCTGATTCATTCAATCCCCAAGAGGTAAAGAA 1400
||| | | | | | || ||||||||||||||||| | | |||||| |||| ||
Sbjct 1082 -ACC-A--A-----C-G-AT-TT-TGATTCTGATTCATTCAGTTCTCAAGAGTTAAACAA 1128
Query 1401 GTTGGTGTATTTACACGGCGCGGTT-TGTGAAGCCCTCAGGCTCTATCCACCTGTTCCCT 1459
||||||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |
Sbjct 1129 GTTGGTGTATTTACATGGCGC-ATTATGTGAAGCCCTCAGGCTATATCCACCGGTTCCAT 1187
Query 1460 TTAACCACAAGTCTCCTGCTAAACCCGACGTGCTTCCAAGCGGCCACAAAGTCAAGGCCA 1519
|| | |||||||||||| | ||||| ||||| |||||||| || |||| |||| | || |
Sbjct 1188 TTCAGCACAAGTCTCCTACAAAACCTGACGTTCTTCCAAGTGGACACAGAGTCGATGCGA 1247
Query 1520 ATTCGAGGATTTTGTTCTGTCTTTACTCATTAGGGAGAATGAAATCGGTTTGGGGAGAAG 1579
||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1248 GTTCGAAGATTGTGTTCTGTCTTTACTCATTGGGGAGAATGAAATCGGTTTGGGGAGAAG 1307
Query 1580 ATGCAAT-GGAATTTAAACCGGAGAGATGGATTTCTGAGAGTGGAAGATCGGTACATGAG 1638
||||| | ||||||||||||||||||||||||||| ||||||||||| | | | |||| |
Sbjct 1308 ATGCA-TCGGAATTTAAACCGGAGAGATGGATTTCAGAGAGTGGAAGGTTGATTCATGTG 1366
Query 1639 CCATCTTATAAGTTCCTATCGTTTAACGCCGGTCCAAGAACTTGTTTGGGGAAAGAAGTG 1698
||||||| ||||||| ||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1367 CCATCTTTTAAGTTCTTATCGTTCAATGCCGGTCCAAGGACTTGTTTGGGGAAAGAAGTG 1426
Query 1699 GCTATGACGCAAATGAAGACAGTGGCTGTGAAAATCATACAAAATTATGACATTAATG-T 1757
|| ||||| || |||||||||||||||||||||| |||||||| ||||| || || | |
Sbjct 1427 GCCATGACACAGTTGAAGACAGTGGCTGTGAAAATTATACAAAACTATGAGATAAA-GAT 1485
Query 1758 CGTTGAAGGGCACAAGATCAAGCCAGCTCCTTCGGTTATTCTCCACATGAAGCATGGTCT 1817
|||||| || ||||||||| |||||| |||||| |||| || |||||||||||||| ||
Sbjct 1486 CGTTGATGGACACAAGATCGAGCCAGTTCCTTCTATTATCCTTCACATGAAGCATGGGCT 1545
Query 1818 TAAAGTCACTGTCTCTAAAAGATGT 1842
|||||| || ||| |||| ||||||
Sbjct 1546 TAAAGTTACAGTCACTAAGAGATGT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73361811870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5