BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39490.1
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943925 jgi|Araly1|943925|scaffold_700154.1 2521 0.0
Ahg943924 jgi|Araly1|943924|scaffold_700153.1 1543 0.0
Ahg481190 jgi|Araly1|481190|fgenesh2_kg.4__250__AT2G23180.1 1291 0.0
> Ahg943925 jgi|Araly1|943925|scaffold_700154.1
Length=1601
Score = 2521 bits (1365), Expect = 0.0
Identities = 1518/1593 (95%), Gaps = 5/1593 (0%)
Strand=Plus/Plus
Query 161 TACA-TTTTAATTTATCTCTAATGGTTTTCATAAGCTTGTTTGAAATCTCCATTGCTTTC 219
|||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1 TACATTTTTAATCTATCTCTAATGGCTTTGATAAGCTTGTTTGAAATCTCCATTGCTTTC 60
Query 220 TTTTGTTTTCTCCTCTTCCGACATTTCTTGATCAACAAGAAAACTCACCGCT-TGTGTCC 278
||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||| ||
Sbjct 61 TTTTGTTTTCTCCTCTTCCGATATTTCTTGATCAACAAGAAACCTCACCG-TCTGTGCCC 119
Query 279 CACAAACTGGCCATTCTTTGGTATGATTCCAGGTTTGCTCGTGGAGATTCATCGTGTTTA 338
|||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 120 CACAAACTGGCCATTCCTTGGTATGATTCCGGGTTTGCTCGTCGAGATCCATCGTGTTTA 179
Query 339 CGACTTCATAACCGAGATTCTCGAGGTCACAAACCTAACCTATCCTTGCACAGGCCCGTG 398
|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 180 CGACTTTATAACCGAGATTCTCGAGGTCACAAATCTAACCTATCCTTGCATAGGCCCGTG 239
Query 399 TTTCGCAAACCTCGACATGTTAGTCACGGTTGATCCTGCTAATATCCACCACATCATGAG 458
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTCGCAAACCTCGACATGCTGGTCACGGTTGATCCTGCTAATATCCACCACATCATGAG 299
Query 459 CTCAAACTTCGCAAACTACCCGAAAGGACCCGAATTCAAGAAGCTATTCGACATTTTGGG 518
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 CTCAAACTTCGCGAACTACCCGAAAGGACCCGAATTCAAGAAGTTATTCGACATTTTGGG 359
Query 519 AGATGGCATTTTCAATGCAGATTCGGAGTTGTGGAAGGATCTGAGGAAATCAGCTCAAAG 578
||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 360 AGACGGGATTTTCAATGCAGATTCGGAATTGTGGAAAGATCTGAGGAAATCAGCTCAAAG 419
Query 579 CATGATGATGAATCCCGAGTTTCAAAAGTTTTCATTAGCTACAAGCTTGAAA-AAGCTAG 637
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 420 CATGATGATGAATCCCGAGTTTCAAAAGTTTTCATTAGCTACAAGC-TCAAATAAGCTAG 478
Query 638 AGAAAGGGCTTGTCCCACTTCTTGACCATGTTGCTAAAGAGAAGCTCGCTGTGGATTTAC 697
||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |
Sbjct 479 AGAAAGGGCTTGTCCCACTTCTTGACCATGTTGCTAAAGAGAAACTCGTTGTGGACTTGC 538
Query 698 AAGACATGTTCCAAAGATTCACGTTTGACACTACGTTTGTTTTAGCGACCGGATATGATC 757
||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||
Sbjct 539 AAGACATGTTCCAAAGATTCACGTTCGACACCACATTTGTTTTAGCGACCGGGTATGATC 598
Query 758 CAGGTTGTCTCTCCGTCGAAATGCCAGAAGTGGAGTTTGCAAGAGCTCTAGACGATGCAG 817
|||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct 599 CAGGCTGTCTCTCCGTCGAAATGCCGGAAGTCGAGTTTGCAAGAGCTTTAGACGATGCAG 658
Query 818 AGGAAGCCATTTTCTTCAGACATGTCAAACCAGAGATCTTTTGGAGGCTGCAAGGCTTGC 877
||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 659 AGGAAGCTATTTTCTTCAGACATATCAAACCAGAGATCTTGTGGAGGCTGCAAGGCTTGC 718
Query 878 TTGGGTTAGGAGATGAGAAGAAAATGACGAAAGCTCGCTCGACTTTAGATCGTGTTTGCT 937
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 719 TTGGGTTAGGAGATGAGAAGAAGATGACGAAAGCTCGCGCGACTTTAGATCGTGTTTGCT 778
Query 938 CCAAGTACATAGCTATAAAGAGAGATGAGGTAAGCCGTGGGACTAACAATGTTGATTCTC 997
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CCAAGTACATAGCTACAAAGAGAGATGAGGTAAGCCGTGGGACTAACAATGTTGATTCTC 838
Query 998 ATTCTAAAGATTTGCTGACGTCTTACATGAATCTGGATACGACCAAGTACAAGTTGCTGA 1057
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 ATTCTAAAGATTTGCTGACGTCTTACATGAATTTGGATACGACCAAGTACAAGTTGCTGA 898
Query 1058 ATCCAAGTGATGAAAGATTCCTCAGAGACACAATCTTGACCTTCATGTTAGCGGGTCGAG 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATCCAAGTGATGAAAGATTCCTCAGAGACACAATCTTGACCTTCATGTTAGCGGGTCGAG 958
Query 1118 ACACGACAGGATCTGGACTCACTTGGTTCTTCTGGCTTCTCATTAAGAACCCAGAGGTCA 1177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 959 ACACGACAGGATCTGGACTCACTTGGTTCTTCTGGCTTCTCATTAAGACCCCAGAAGTCA 1018
Query 1178 TTGCCAAGATTCGTCAAGAAATCAACACAGCTCTGTTTCAAAGAAGCAAGGTTGATGATG 1237
|||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| ||
Sbjct 1019 TTGCCAAGATTCGTCAAGAAATAAACACAAATCTGTTTCAAAGAAGCAAGGTTAATGCTG 1078
Query 1238 ATGCTTCTAACAATAATGATTCTGATTCATTCAGTCCCCAAGAGTTAAAGAAGTTGGTGT 1297
|||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||
Sbjct 1079 ATGCTTCTGACAATAATGACTCTGATTCATTCAATCCCCAAGAGTTAAAGAAATTGGTGT 1138
Query 1298 ATCTACACGGCGCAATATGTGAATCCCTCAGACTCTATCCACCTGTTCCGTTTCAGCACA 1357
||||||||||||| || |||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 1139 ATCTACACGGCGCGATTTGTGAAGCCCTCAGACTCTATCCACCTGTTCCCTTTCAACACA 1198
Query 1358 AGTCTCCTACTAAACCGGACGTTCTTCCAAGCGGACACAAAGTCGACGCCAACTCGAAGA 1417
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1199 AGTCTCCTACAAAACCAGACGTTCTTCCAAGTGGACACAAAGTCGACGCCAACTCGAAGA 1258
Query 1418 TTTTGTTCTGTCTCTACTCATTAGGGAGAATGAAGTCGGTTTGGGGAGAAGATGCATTGG 1477
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1259 TTTTGTTCTGTCTTTACTCATTAGGGAGAATGAAATCGGTTTGGGGAGAAGATGCATTGG 1318
Query 1478 AATTCAAACCGGAGAGATGGATTTCTGAGAGTGGGAATTCGGTACACGAGCCATCTTATA 1537
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1319 AATTCAAACCGGAGAGATGGATTTCTGAGAGTGGAAATTCGGTACACGAGCCATCTTATA 1378
Query 1538 AGTTCTTATCGTTTAACGCGGGTCCAAGAACTTGTTTGGGGAAAGAAGTGGCTATGATGC 1597
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 AGTTCTTATCGTTTAACGCTGGTCCAAGAACTTGTTTGGGGAAAGAAGTGGCTATGACGC 1438
Query 1598 AAATGAAGAGTGTGGCTGTGAAAATCATACAGAATTATGAGATGAAGATTGTTGAAGGGC 1657
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1439 AAATGAAGACAGTGGCTGTGAAAATCATACAGAATTATGAGATGAAGATCGTTGAAGGGC 1498
Query 1658 AACAAATCGAGCCAGCTCCTTCTGTTATTCTCCACATGAAGCATGGTCTTAAAGTCACTG 1717
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1499 AACAAATCGAGCCAGCTCCTTCTGTAATTCTCCACATGAAGCATGGTCTTAAAGTCACAG 1558
Query 1718 TTACTAAGAGATGTTTGGTTTGATTGTTTTTTC 1750
|||||||||||||||||||||||||||||||||
Sbjct 1559 TTACTAAGAGATGTTTGGTTTGATTGTTTTTTC 1591
> Ahg943924 jgi|Araly1|943924|scaffold_700153.1
Length=1589
Score = 1543 bits (835), Expect = 0.0
Identities = 1354/1600 (85%), Gaps = 54/1600 (3%)
Strand=Plus/Plus
Query 169 AATTTATCTCTAATGGTTTTCATAAGCTTGTTTGAAATCTCCATTGCTTTCTTTTGTTTT 228
||||| || ||||||| ||| | ||||| | ||||||||||||||||||||||||||
Sbjct 10 AATTTCTCCCTAATGGCTTTGGTCAGCTTACTCGAAATCTCCATTGCTTTCTTTTGTTTC 69
Query 229 CTCCTCTTCCGACA-TTTCTTGATCAACAAGAAAACTCACCGCTT-GTGTCCCACAAACT 286
|| |||| | | | |||| |||||| ||||||| | ||||| || | || ||||||||
Sbjct 70 CTTATCTTTC-AAATTTTCCTGATCAGCAAGAAACCGCACCG-TTCATTTCTCACAAACT 127
Query 287 GGCCATTCTTTGGTATGATTCCAGGTTTGC-TCGTGGAGATTCATCGTGTTTACGACTTC 345
|||| || | |||||| |||| ||||| | || || | | |||||| || |||||
Sbjct 128 GGCCGCTCCTCGGTATGCTTCCGGGTTTACTTC-CCCAGCTCCCTCGTGTCTATGACTTT 186
Query 346 ATAACCGAGATTCTCGAGGTCACAAACCTAACCTATCCTTGCACAGGCCCGTGTTTCGCA 405
||||| ||| |||| |||| | ||| ||| ||||| || || ||| || | ||| |
Sbjct 187 ATAACTGAGGTTCTTGAGGACGGGAACTTAAACTATCTTTTCAAAGGACCTTTTTTGGGG 246
Query 406 AACCTCGACATGTTAG-TCACGGTTGATCCTGCTAATATCCACCACATCATGAGCTCAAA 464
| |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 247 GGCATCGACATGTT-GTTCACCGTTGATCCTGCTAATATCCACCACATCATGAGCTCAAA 305
Query 465 CTTCGCAAACTACCCGAAAGGACCCGAATTCAAGAAGCTATTCGACATTTTGGGAGATGG 524
||| || || |||||||||||| |||||||||||||| |||| ||| |||||||||||||
Sbjct 306 CTTTGCGAATTACCCGAAAGGAACCGAATTCAAGAAGTTATTTGACGTTTTGGGAGATGG 365
Query 525 CATTTTCAATGCAGATTCGGAGTTGTGGAAGGATCTGAGGAAATCAGCTCAAAGCATGAT 584
|||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 366 GATTTTCAACGTGGATTCAGAGTTGTGGAAGGATCTAAGGAAATCTTCTCAAAGCATGAT 425
Query 585 GA-TGAATCCCGAGTTTCAAAAGTTTTCATTAGCTACAAGCTTGAAAAAGCTAGAGAAAG 643
|| ||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 426 GAATGA-TCCCGATTTTCAAAGGTTTTCATTAGCTACAAGCTTGAGTAAGCTAGAGAAAG 484
Query 644 GGCTTGTCCCACTTCTTGACCATGTTGCTAAAGAGAAGCTCG-CTGTGGATTTACAAGAC 702
||||||| ||||||||||| |||| |||||||||||| |||| | ||||| ||||||||
Sbjct 485 GGCTTGTTCCACTTCTTGATCATGCTGCTAAAGAGAAACTCGTC-GTGGACTTACAAGAT 543
Query 703 ATGTTCCAAAGATTCACGTTTGACACTACGTTTGTTTTAGCGACCGGATATGATCCAGGT 762
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 544 GTTTTCCAAAGATTCACGTTTGACACTACGTTTGTTTTAGCAACCGGATATGATCCAGGT 603
Query 763 TGTCTCTCCGTCGAAATGCCAGAAGTGGAGTTTGCAAGAGCTCTAGACGATGCAGAGGAA 822
|||||||| ||||||||||| ||| | ||||||||||||||| |||||||||||||||||
Sbjct 604 TGTCTCTCGGTCGAAATGCCGGAAATCGAGTTTGCAAGAGCTTTAGACGATGCAGAGGAA 663
Query 823 GCCATTTTCTTCAGACATGTCAAACCAGAGATCTTTTGGAGGCTGCAAGGCTTGCTTGGG 882
|||||||||| |||||||||||| || ||||| | |||| | ||||| | | | |||||
Sbjct 664 GCCATTTTCTACAGACATGTCAAGCCGGAGATGGTGTGGAAGATGCAAAGATGGATTGGG 723
Query 883 -TTAGGAGATGAGAAGAAAATGACGAA-AGCTCGCTCGACTTT-AGATCGTGTTTGCTCC 939
|| ||||||||| ||| ||| || ||||| | || ||| | |||||||||||||
Sbjct 724 GTT-GGAGATGAGTTGAAGCTGAA-AAGAGCTCACGCGGTTTTCA-ATCGTGTTTGCTCT 780
Query 940 AAGTACATAGCTA-TAAAGAGAGATGAGGT-AAGCCGTGGGACTAACAATGTTGATTCT- 996
||| ||||||| ||| |||||||||| | || ||| ||| | | ||| ||||
Sbjct 781 GAGTGCATAGCTTCTAA-GAGAGATGAGATCAA-CCGAGGGG--A-CG--GTTC-TTCTT 832
Query 997 CATTCTAAAGATTTGCTGACGTCTTACATGAA-TCTGGATACGACCAAGTACAAGTTGCT 1055
| |||||| |||||| ||| ||||| | | || | | || ||||| |||||||||||| |
Sbjct 833 C-TTCTAATGATTTGTTGATGTCTT-CTTTAAATGTTGACACGACTAAGTACAAGTTGTT 890
Query 1056 GAATCCAAGTGATGAAAGATTCCTCAGAGACACAATCTTGACCTTCATGTTAGCGGGTC- 1114
||||||||||||||| |||||||| |||||||||||| || ||||||||||||| || |
Sbjct 891 GAATCCAAGTGATGACAGATTCCTTAGAGACACAATCCTGTCCTTCATGTTAGCTGG-CA 949
Query 1115 GAGACACGACAGGATCTG-GACTCACTTGGTTCTTCTGGCTTCTCATT-AAGAACCCAGA 1172
||||||||||||| || | | ||||||||||||||||||||||| || || |||| |||
Sbjct 950 GAGACACGACAGGCTCAGCG-CTCACTTGGTTCTTCTGGCTTCT-ATGCAAAAACCAAGA 1007
Query 1173 GGTCATTGCCAAGATTCGTCAAGAAATCAACACAGCTCTGTTTCAAAGAAGCAAGGTTGA 1232
| ||| ||||||||||||||||||||||||||| ||| |||| ||||| |||| |||
Sbjct 1008 AGCCATGGCCAAGATTCGTCAAGAAATCAACACAAATCTATTTCCAAGAAACAAGAATGA 1067
Query 1233 TGATGATGCTTCTAACAATAATGATTCTGATTCATTCAGTCCCCAAGAGTTAAAGAAGTT 1292
| | || |||| || ||||||||||||||||| |||||||| | ||||||||||
Sbjct 1068 CGGTTCTGTTTCT-----TA-TGATTCTGATTCATTCAATCCCCAAGGGATAAAGAAGTT 1121
Query 1293 GGTGTATCTACACGGCGCAATATGTGAATCCCTCAGACTCTATCCACCTGTTCCGTTTCA 1352
||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||| ||| |
Sbjct 1122 GGTGTATTTACACGGCGCAATTTGTGAAGCCCTCAGGCTCTATCCACCTGTTCCCTTTAA 1181
Query 1353 GCACAAGTCTCCTACTAAACCGGACGTTCTTCCAAGCGGACACAAAGTCGACGCCAACTC 1412
|||||||||||||||||||| ||||| ||||||||||| ||||||||| | ||||| ||
Sbjct 1182 CCACAAGTCTCCTACTAAACCCGACGTCCTTCCAAGCGGCCACAAAGTCAAAGCCAATTC 1241
Query 1413 GAAGATTTTGTTCTGTCTCTACTCATTAGGGAGAATGAAGTCGGTTTGGGGAGAAGATGC 1472
||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1242 GAAAATATTGTTCTGTCTTTACTCATTAGGGAGAATGAAATCGGTTTGGGGAGAAGATGC 1301
Query 1473 ATTGGAATTCAAACCGGAGAGATGGATTTCTGAGAGTGGGA-ATTCGGTACACGAGCCAT 1531
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1302 ATTGGAATTCAAACCGGAGAGATGGATTTCTGAGAGTGGAAGAT-CGGTACACGAGCCAT 1360
Query 1532 CTTATAAGTTCTTATCGTTTAACGCGGGTCCAAGAACTTGTTTGGGGAAAGAAGTGGCTA 1591
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1361 CTTATAAGTTCTTATCATTTAACGCAGGTCCAAGAACTTGTTTGGGGAAAGAAGTGGCTA 1420
Query 1592 TGATGCAAATGAAGAGTGTGGCTGTGAAAATCATACAGAATTATGAGATGAA-GATTGTT 1650
||||||||||||||| |||||||||||||||||||| || |||||||| || | | |||
Sbjct 1421 TGATGCAAATGAAGACAGTGGCTGTGAAAATCATACAAAACTATGAGATTAATG-TCGTT 1479
Query 1651 GAAGGGCAACAA-ATCGAGCCAGCTCCTTCTGTTATTCTCCACATGAAGCATGGTCTTAA 1709
|||||||| ||| ||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1480 GAAGGGCA-CAAGATCAAGCCAGCTCCTTCGGTTATCCTCCACATGAAGCATGGTCTTAA 1538
Query 1710 AGTCACTGT-TACTAAGAGATGTTTGGT-TTGATTGTTTT 1747
|||||| || | |||| ||||||| ||| |||| ||||||
Sbjct 1539 AGTCACAGTCT-CTAAAAGATGTT-GGTCTTGAATGTTTT 1576
> Ahg481190 jgi|Araly1|481190|fgenesh2_kg.4__250__AT2G23180.1
Length=1648
Score = 1291 bits (699), Expect = 0.0
Identities = 1321/1613 (82%), Gaps = 75/1613 (5%)
Strand=Plus/Plus
Query 148 AAAAGGAGAA-AAATACATTT-T-AATTTATCTCTAATGGTTTTCATAAGCTTGTTTGAA 204
||||| |||| ||| || ||| | || || |||||||||| | | |||| ||| |||||
Sbjct 4 AAAAGAAGAAGAAACAC-TTTCTCAA-TTCTCTCTAATGGCTCTAATAACCTTACTTGAA 61
Query 205 ATCTCCATTGCTTT-CTTTTGTTTTCTCC-T-C-TT-CCGACATTTCTTGATCAACAAGA 259
|||| ||| |||| | ||| || ||||| | | || | || ||| |||||| | |||||
Sbjct 62 GTCTCAATTTCTTTAC-TTT-TTATCTCCTTCCTTTACGGATATTGCTTGATTAGCAAGA 119
Query 260 AAACTCACCGCTT-GTGTCCCACAAACTGGCCATTCTTTGGTATGATTCCAGGTTTGCTC 318
|| |||| || || || || ||| |||||||| ||| | |||||| |||| ||||| |||
Sbjct 120 AACCTCATCG-TTCGTTTCTCACTAACTGGCCGTTCCTCGGTATGCTTCCGGGTTTACTC 178
Query 319 GTGGAGATTCATCGTGTTTACGACT-TCATAACCGAGATTCTCGAGGTCACAAACCTAAC 377
|||||||| | ||||||||| |||| | |||||||| ||||||||| | ||||| ||||
Sbjct 179 GTGGAGATCCCTCGTGTTTATGACTAT-GTAACCGAGCTTCTCGAGGCCTCAAACTTAAC 237
Query 378 CTATCCTTGCACAGGCCCGTGTTTCGCAAACCTCGACATGTTAG-TCACGGTTGATCCTG 436
||||||| || ||| |||| ||||| ||||||||||| | |||| |||||||| |
Sbjct 238 TTATCCTTTCAAAGGTCCGTATTTCGGGGGTCTCGACATGTT-GATCACCGTTGATCCGG 296
Query 437 CTAATATCCACCACATCATGAGCTCAAACTTCGCAAACTACCCGAAAGGACCCGAATTCA 496
|||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||
Sbjct 297 CTAATATCCACCACATCATGAGCTCAAACTTCGCGAATTACCCGAAAGGATCCGAGTTCA 356
Query 497 AGAAGCTATTCGACATTTTGGGAGATGGCATTTTCAATGCAGATTCGGAGTTGTGGAAGG 556
||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 357 AGAAGATATTCGATGTTTTGGGAGATGGCATTTTCAATGCAGATTCTGAGTTATGGAAAG 416
Query 557 ATCTGAGGAAATCAGCTCAAAGCATGATGA-TGAATCCCGAGTTTCAAAAGTTTTCATTA 615
|||| ||||||||||||||||||||||||| | | || || ||||||| |||| || ||
Sbjct 417 ATCTAAGGAAATCAGCTCAAAGCATGATGACTCA-TCAAGATTTTCAAAGGTTTACACTA 475
Query 616 -GCTACAAGCTTGAAAAAGCTAGAGAAAGGGCTTGTCCCACTTCTTGACCATGTTGCT-A 673
| |||||| ||| ||||||||||||||||| |||||||||||||| | |||||| |
Sbjct 476 AGA-ACAAGCATGAGTAAGCTAGAGAAAGGGCTCGTCCCACTTCTTGATTACGTTGCTGA 534
Query 674 -AAGAGAA--GCTCGCTGTGGATTTACAAGACATGTTCCAAAGATTCACGTTTGACACTA 730
|||| || | |||||| | |||||||| ||||||||||||| ||||| ||||||
Sbjct 535 GAAGAAAATAG-TCGCTG---ACTTACAAGATGTGTTCCAAAGATTTACGTTCGACACTT 590
Query 731 CGTTTGTTTTAGCGACCGGA-TATGATCCAGGTTGTCTCTCCGTC-GAAATGCCAG-AAG 787
||||| ||||||||||||| | ||||||||||||||| | || | |||||||| | ||
Sbjct 591 CGTTTATTTTAGCGACCGGGGT-TGATCCAGGTTGTCT-TGCGACTGAAATGCC-GCAAA 647
Query 788 TGGAGTTTGCAAGAGCTCTAGACGATGCAGAGGAAGCCATTTTCTTCAGACATGTCAAAC 847
| |||||||| |||||| ||||||| ||||||| ||| ||||||||||| |||||||| |
Sbjct 648 TCGAGTTTGCTAGAGCTTTAGACGAAGCAGAGGCAGCAATTTTCTTCAGGCATGTCAAGC 707
Query 848 CAGAGATCTTTTGGAGGCTGCAAGGCTTGCTTGGGTTAGGAGATGAGAAGAAAATGACGA 907
| ||||| |||||| | ||||||| || ||||||| ||||||||| ||| |||| ||
Sbjct 708 CGGAGATGGTTTGGAAGATGCAAGGATTTATTGGGTTTGGAGATGAGTTGAAGATGA-GA 766
Query 908 AA-GCTCGCTCGACTTTAGATCGTGTTTGCTCCAAGTACATAGCTA-TAAAGAGAGATGA 965
|| |||| ||||| ||| || || |||||||| || | ||||||| ||| |||||||||
Sbjct 767 AAAGCTCACTCGATTTTCGACCGAGTTTGCTCTAAATGCATAGCTTCTAA-GAGAGATGA 825
Query 966 GGTAAGCCG-TGGGACTAACAATGTTGATTCT-CATTCTAAAGATTTGCTGACGTCTTAC 1023
||| | |||| || || | || ||| | ||||||||||||| ||| |||||||
Sbjct 826 AATAA-CTAATGGGGTTATTAACATCGACTCTTC-TTCTAAAGATTTGTTGATGTCTTAC 883
Query 1024 ATGAATCTGGATACGACCAAGTACAAGTTGCTGAATCCAAGTGATGA-AAGATTCCTCAG 1082
|||| | ||||||||||||||||||||||| |||||||||||||||| || |||||| ||
Sbjct 884 ATGAGTGTGGATACGACCAAGTACAAGTTGTTGAATCCAAGTGATGACAA-ATTCCTTAG 942
Query 1083 AGACACAATCTTGACCTTCATGTTAGCGGGTCGAGACACGACAGGATCTGGACTCACTTG 1142
||||| ||||| | ||||||| |||| ||| ||||||| ||||| |||| ||||||||
Sbjct 943 AGACATGATCTTAAGCTTCATGATAGCTGGTAGAGACACCACAGGCTCTGCTCTCACTTG 1002
Query 1143 GTTCTTCTGGCTTCTCATT-AAGAACCCAGAGGTCATTGCCAAGATTCGTCAAGAAATCA 1201
|||||| ||||||||| | ||||||||| | | ||| |||||||||||||||||||||
Sbjct 1003 GTTCTTTTGGCTTCTC-TCCAAGAACCCAAAAGCCATAACCAAGATTCGTCAAGAAATCA 1061
Query 1202 ACACAGCTCTGTTTCAAAGAAGCAAGGTTGATGATGATGCTTCTAACAATAATGATTCTG 1261
||||| || | | | |||| | | | | ||| || ||||||||
Sbjct 1062 ACACAAAACTAT--C---GC--CAAG----A--A-----C--C-AACGATTTTGATTCTG 1100
Query 1262 ATTCATTCAGTCCCCAAGAGTTAAAGAAGTTGGTGTATCTACACGGCGCAATATGTGAAT 1321
||||||||||| | ||||||||||| |||||||||||| |||| |||||| ||||||||
Sbjct 1101 ATTCATTCAGTTCTCAAGAGTTAAACAAGTTGGTGTATTTACATGGCGCATTATGTGAAG 1160
Query 1322 CCCTCAGACTCTATCCACCTGTTCCGTTTCAGCACAAGTCTCCTACTAAACCGGACGTTC 1381
||||||| || |||||||| ||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1161 CCCTCAGGCTATATCCACCGGTTCCATTTCAGCACAAGTCTCCTACAAAACCTGACGTTC 1220
Query 1382 TTCCAAGCGGACACAAAGTCGACGCCAACTCGAAGATTTTGTTCTGTCTCTACTCATTAG 1441
||||||| ||||||| |||||| || | ||||||||| |||||||||| |||||||| |
Sbjct 1221 TTCCAAGTGGACACAGAGTCGATGCGAGTTCGAAGATTGTGTTCTGTCTTTACTCATTGG 1280
Query 1442 GGAGAATGAAGTCGGTTTGGGGAGAAGATGCATTGGAATTCAAACCGGAGAGATGGATTT 1501
|||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1281 GGAGAATGAAATCGGTTTGGGGAGAAGATGCATCGGAATTTAAACCGGAGAGATGGATTT 1340
Query 1502 CTGAGAGTGGGAA--TTCGGTACACGAGCCATCTTATAAGTTCTTATCGTTTAACGCGGG 1559
| |||||||| || || | | || | |||||||| ||||||||||||||| || || ||
Sbjct 1341 CAGAGAGTGG-AAGGTT-GATTCATGTGCCATCTTTTAAGTTCTTATCGTTCAATGCCGG 1398
Query 1560 TCCAAGAACTTGTTTGGGGAAAGAAGTGGCTATGATGCAAATGAAGAGTGTGGCTGTGAA 1619
|||||| ||||||||||||||||||||||| |||| || |||||| |||||||||||
Sbjct 1399 TCCAAGGACTTGTTTGGGGAAAGAAGTGGCCATGACACAGTTGAAGACAGTGGCTGTGAA 1458
Query 1620 AATCATACAGAATTATGAGATGAAGATTGTTGAAGGGCAACAA-ATCGAGCCAGCTCCTT 1678
||| ||||| || |||||||| ||||| ||||| || || ||| |||||||||| |||||
Sbjct 1459 AATTATACAAAACTATGAGATAAAGATCGTTGATGGACA-CAAGATCGAGCCAGTTCCTT 1517
Query 1679 CTGTTATTCTCCACATGAAGCATGGTCTTAAAGTCACTGTTACTAAGAGATGT 1731
|| |||| || |||||||||||||| |||||||| || || ||||||||||||
Sbjct 1518 CTATTATCCTTCACATGAAGCATGGGCTTAAAGTTACAGTCACTAAGAGATGT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69095704430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5