BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39500.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352944 jgi|Araly1|352944|fgenesh1_pg.C_scaffold_7000117 2141 0.0
Ahg491517 jgi|Araly1|491517|fgenesh2_kg.7__950__AT4G32170.1 1546 0.0
Ahg952035 jgi|Araly1|952035|scaffold_31100001.1 765 0.0
Ahg331566 jgi|Araly1|331566|fgenesh1_pm.C_scaffold_8000909 737 0.0
> Ahg352944 jgi|Araly1|352944|fgenesh1_pg.C_scaffold_7000117
Length=2985
Score = 2141 bits (1159), Expect = 0.0
Identities = 1333/1417 (94%), Gaps = 11/1417 (1%)
Strand=Plus/Plus
Query 1 ATGCTCCCCTGTCTGCTCGTGGTGCTCCACAGGATCTATGACTATATCGTTGAGATTCTC 60
||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 1573 ATGCTCCCCTGTCTGCTCGCGGTGCTCCGCCGGATCTATGACTATATCGTTGAGATTCTT 1632
Query 61 GAAATCTCTGATTTGACATTTTCATTCAAGGGACCG-TGGTTCGCCGGAATGGATACCTT 119
|||||||| ||||||||||||||||||||||||||| | |||||| |||||||||| ||
Sbjct 1633 GAAATCTCCGATTTGACATTTTCATTCAAGGGACCGCT-GTTCGCTGGAATGGATATGTT 1691
Query 120 GCTCACGGTTGATCCAGCTAACATTCATCATATGATGAACTCAAACTTCTCAAATTACAT 179
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1692 GCTCACGGTTGATCCTGCTAACATTCATCATATAATGAACTCAAACTTCTCAAATTACAT 1751
Query 180 CAAAGGATCTGATTTCAAAGAAGTTTTTGATGTCTTCGGAGACGGAATTATCACCACGGA 239
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1752 CAAAGGATCTGACTTCAAAGAAGTTTTTGATGTTTTTGGAGACGGAATTATCACCACAGA 1811
Query 240 CTCTGAGCTATGGAAGAATCTAAGGAAGTCTTATCAAGAAATGCTCCATCATCAAGCGTT 299
|||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1812 CTCTGATCTATGGAAGAATCTGAGGAAGTCTTATCAAGCAATGCTCCATCATCAAGCGTT 1871
Query 300 TC-AAAGCTTTTCATTGAGTACCACAAGAAGTAAACTCAAGGACGGGCTTGTTCCTCTTC 358
|| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1872 TCAAAAG-TTTTCATTGAGTACCACAAGAAGTAAACTCATGGACGGGCTTGTTCCTCTTC 1930
Query 359 TTAATCATTTTGCAGAGGAAGGAACAACTGTGGATTTGCAAGATGTGCTTGGGAGGTTCA 418
||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 1931 TTAATCATTTTGCAGAGGAAGGAACAATTGTGGATTTGCAAGATGTCCTCGGGAGGTTCA 1990
Query 419 CTTTCGATACAATCTTAATCCTTATAACCGGTTCTGATCCTAGATCTCTCTCCATTGAAA 478
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1991 CTTTCGATACGGTCTTAATCCTTATAACCAGTTCTGATCCTAGATCTCTTTCCATTGAAA 2050
Query 479 TGCATGAGGATGAATTAGCTAAAGCTCTCGACGTTGTTGGAGAAGGGATTTTCTTTAGGC 538
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 2051 TGCATGAGGATGAATTAGCTAAAGCTCTCGACGATGTTGGAGAAGGGATTTTGTTTAGGC 2110
Query 539 ATGTTAAACCAAAGTTCTTGTGGAAGCTGCA-AAACTGGATGGGATTTGGACACGAGAAG 597
||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 2111 ATGTTAAACCAAAATTCTTGTGGAAGCTGCAGAAA-TGGATGGGATTGGGACACGAGAAG 2169
Query 598 AAGATGATTGAAGCTAATGCAACCTTTGACCGTGTCTGCGCGAAATACATATCAGACAAG 657
||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||| |||
Sbjct 2170 AAGATGACTGAAGCTAATGCAACTTTTGACCGTGTTTGCGCGAAATATATATCAGATAAG 2229
Query 658 AGAGGAGAGATTATAAGATCACAAAGGTTTAGTGATATTTCCTATGGAG-AA--CCTGAG 714
|||| ||||||||| |||||||||||||||| ||||||||||||||||| || | ||||
Sbjct 2230 AGAGAAGAGATTATCAGATCACAAAGGTTTAATGATATTTCCTATGGAGAAAGTCATGAG 2289
Query 715 GATCTTTTATCTTCCTTCATGAAGCTAGATACAACCAAGTACAATCTCTTGAATCCAAGT 774
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||
Sbjct 2290 GATCTTTTATCTTCCTTCATAAAGCTAGATACAACCAAGTACAAGCTCTTGAATTCGAGT 2349
Query 775 GACGATAAGTTCCTCAGAGACACTATTTTGGCTTTCATTCTAGCGGGAAGAGATACCACT 834
|| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 2350 GAAGATAAGTTCCTCAGAGACACTATTATGGCTTTCATTCTAGCGGGAAGGGATACAACT 2409
Query 835 GCATCTGCTCTCACTTGGTTCTTCTGGCTTCTCTCTGAAAACGCTCAAGTGGTGAGCAAG 894
| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 2410 TCCTCTGCTCTCACTTGGTTCTTCTGGCTTCTCTCTGAAAGCCCTCAAGTGGTGACCAAG 2469
Query 895 ATTCGCCAAGAGATCATCAACACAAATCCATCAAAGAATGGAAATGGCCAAGAGAATTTA 954
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2470 ATTCGCCAAGAGATCATCAACATAAATCTATCAAAGAATGGAAATGGCCAAGAGAATTTA 2529
Query 955 GACAAGTTGGTGTATTTACATGGTGCGTTGTGTGAAGCAATGAGACTCTATCCACCAGTT 1014
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2530 GACAAGTTGGTGTATTTACATGGTGTGTTGTGTGAAGCAATGAGACTCTATCCACCAGTT 2589
Query 1015 TCCTTTGGGCGCAAGTCTCCTATCAAATCAGATGTGCTTCCAAGTGGCCATAAAGTCCAA 1074
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2590 TCCTTTGGGCGCAAGTCTTCTATCAAATCAGATGTGCTTCCAAGTGGCCATAGAGTAGAA 2649
Query 1075 GCAAACTCTAAGATTATAATCTGCCTTTATGCGTTGGGGAGGATGAGAGCGGTTTGGGGA 1134
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2650 GCAAACTCTAAGATTATCATCTGCCTTAAAGCGTTGGGGAGGATGAGAGCGGTTTGGGGA 2709
Query 1135 GATGACGCATTGGAATTCAAGCCAGAAAGATGGGTTTCTGACAAGGGAAGCTTAAGACAT 1194
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2710 GATGACGCATTGGAATTCAAGCCAGAGAGATGGGTTTCTGAGAAGGGAAGCTTAAGACAT 2769
Query 1195 GAGCCCTCCTTCAAGTTCTTATCGTTTAATTCTGGTCCAAGAACTTGTCTAGGTAAACAT 1254
|||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 2770 GAGCCCTCCTTCAAGTTCTTATCGTTTATTTCCGGTCCAAGAACTTGTCTAGGAAAACAT 2829
Query 1255 TTAGCTATGACTCAAATGAAGATGGTGGCCGTGGAGATATTACA-CAACTATGAGATTAA 1313
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 2830 TTAGCTATGACTCAAATGAAGATGGTGGCCGTGGAGATATTACAACA-CTATGACATTAA 2888
Query 1314 AGTTATTAAAGGGCAAAAGATTAAGCCAGTTCTTGGTTTCATATTGTCTATGAAGCATGG 1373
||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 2889 GGTTATTAAAGGGCAAAAGATTGAGCCAGTTCTTGGTTTTATATTGTCCATGAAGCATGG 2948
Query 1374 ACTTAGGATCACAATTACTAAGAGATGTCCATATTGA 1410
|||||||||||||||||||||||| ||||||| ||||
Sbjct 2949 ACTTAGGATCACAATTACTAAGAGGTGTCCATCTTGA 2985
> Ahg491517 jgi|Araly1|491517|fgenesh2_kg.7__950__AT4G32170.1
Length=1558
Score = 1546 bits (837), Expect = 0.0
Identities = 1230/1417 (87%), Gaps = 38/1417 (3%)
Strand=Plus/Plus
Query 1 ATGCTCCCCTG-TCTGCTCGTGGTGCTCCACAGGATCTATGACTATATCGTTGAGATTCT 59
||||||||| | |||||| | ||||||| ||||||||||||| | |||| |||||||
Sbjct 130 ATGCTCCCC-GCTCTGCTTAAAGCGCTCCACCGGATCTATGACTACAGCGTTAAGATTCT 188
Query 60 CGAAATCTCTGATTTGACATTTTCATTCAAGGGACCGTGGTTCGCCGGAATGGATACCTT 119
||||| |||||| ||||| ||| ||||||| |||||| |||| || ||||| |||| ||
Sbjct 189 CGAAACCTCTGACTTGACGTTTCCATTCAAAGGACCGCGGTTTGCTGGAATCGATATGTT 248
Query 120 GCTCACGGTTGATCCAGCTAACATTCATCATATGATGAACTCAAACTTCTCAAATTACAT 179
| |||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 249 GATCACAGTTGATCCAGCTAACATTCATCATATAATGAGCTCAAGTTTCTCAAATTACAT 308
Query 180 CAAAGGATCTGATTTCAAAGAAGTTTTTGATGTCTTCGGAGACGGAATT-ATCACCACGG 238
||||||| | || ||| |||| ||||||||||| || |||||| | || ||||||||||
Sbjct 309 CAAAGGACCGGAGTTCCAAGATGTTTTTGATGTGTTAGGAGACAG-TTTCATCACCACGG 367
Query 239 ACTCTGAGCTATGGAAGAATCTAAGGAAGTCTTATCAAGAAATGCTCCATCA-TCAAGCG 297
|||| ||||||||||||||| | |||||||||||||||| ||||||||| | ||||| |
Sbjct 368 ACTCGGAGCTATGGAAGAATATGAGGAAGTCTTATCAAGCCATGCTCCAT-ACTCAAGAG 426
Query 298 TTTCAAAGCTTTTCATTGAGTACCACAAGAAGTAAACTCAAGGACGGGCTTGTTCCTCTT 357
|||||||| |||||| ||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 427 TTTCAAAGGTTTTCAATGAGTACCATGACAAGTAAACTCAAGGACGGGCTTGTTCCCCTT 486
Query 358 CTTAATCATTTTGCAGAGGAAGGAACAACTGTGGATTTGCAAGATGTGCTT-GGGAGGTT 416
|||||||||||||||||||||||||||||| | || ||||||| ||| || ||||||||
Sbjct 487 CTTAATCATTTTGCAGAGGAAGGAACAACTCTTGACTTGCAAGGCGTG-TTCGGGAGGTT 545
Query 417 CACTTTCGATACAATCTTAATCCTTATAACCGGTTCTGATCCTAGATCTCTCTCCATTGA 476
||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 546 CACTTTCGATACAATCTGCATCCTTGTAACTGGTTCTGATCCTAGATCTCTCTCCATTGA 605
Query 477 AATGCATGAGGATGAATTAGCTAAAGCTCTCGACGTTGTTGGAGAAGGGATT-TTCTTTA 535
||||| || ||||||||| |||||||||||||||| ||||||||||| |||| || | ||
Sbjct 606 AATGCCTGGGGATGAATTTGCTAAAGCTCTCGACGATGTTGGAGAAGCGATTCTT-TATA 664
Query 536 GGCATGTTAAACCAAAG-TTCTTGTGGAAGCTGCAAAACTGGATGGGATTTGGACACGAG 594
||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 665 GGCATGTTAAACC-AAGATTCTTGTGGAAGCTGCAAAACTGGATGGGATTCGGACAAGAG 723
Query 595 AAGAAGATGATTGAAGCTAATGCAACCTTTGACCGTGTCTGCGCGAAATACATATCAGAC 654
|||||| ||||||||||||||||||| |||||||| || || || ||||||||||||| |
Sbjct 724 AAGAAGCTGATTGAAGCTAATGCAACTTTTGACCGCGTGTGTGCCAAATACATATCAGCC 783
Query 655 AAGAGAGGAGAGATTATAAGATCACAAAGGTTTAGTGATATTTCCTATGGAGAACCTGAG 714
||||||| |||||||| |||||||| |||| | | ||||| |||||||| ||||
Sbjct 784 AAGAGAGAAGAGATTAAAAGATCAC-AAGG----G-G---TTTCCAATGGAGAAAGTGAG 834
Query 715 GATCTTTTATCTTCCTTCATGAAGCTAGATACAACCAAGTACAATCTCTTGAATCCAAGT 774
||||||||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 835 GATCTTTTAACTTCCATCATAAAGCTAGATACAACCAAGTACAAGCTCTTGAATCCAAGT 894
Query 775 GACGATAAGTTCCTCAGAGACACTATTTTGGCTTTCATTCTAGCGGGAAGAGATACCACT 834
|||||||||||||| ||||||| ||| || ||||||||||| ||||||||||| || ||
Sbjct 895 GACGATAAGTTCCTTAGAGACAATATCTTAGCTTTCATTCTCGCGGGAAGAGACACAACA 954
Query 835 G-CATCTGCTCTCACTTGGTTCTTCTGGCTTCTCTCTGAAAA-CGCTCAAGTGGTGAG-C 891
| || | |||||| |||||||||||||||||||||||||||| | | |||||||| || |
Sbjct 955 GCCA-CCGCTCTCTCTTGGTTCTTCTGGCTTCTCTCTGAAAATC-CACAAGTGGT-AGCC 1011
Query 892 AAGATTCGCCAAGAGATCATCAAC-ACA--AATCCATCAAAGAA-TGGAAATGGCCAAGA 947
|||||||| |||||||||| |||| ||| ||| ||| ||||| |||||| |||||||
Sbjct 1012 AAGATTCGTCAAGAGATCAACAACAACACGGATCTATC-AAGAACCGGAAATAGCCAAGA 1070
Query 948 GAATTTAGACAAGTTGGTGTATTTACATGGTGCGTTGTGTGAAGCAATGAGACTCTATCC 1007
|||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1071 GAATGTGGACAAGTTGGTGTATTTACACGGTGCGTTGTGTGAAGCAATGAGACTCTACCC 1130
Query 1008 ACCAGTTTCCTTTGGGCGCAAGTCTCCTATCAAATCAGATGTGCTTCCAAGTGGCCATAA 1067
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1131 ACCAGTTTCCTTCGGGCGCAAGTCTCCAATCAAATCAGATGTGCTTCCAAGTGGGCATAA 1190
Query 1068 AGTCCAAGCAAACTCTAAGATTATAATCTGCCTTTATGCGTTGGGGAGGATGAGAGCGGT 1127
|||| | ||||||||||||||||| ||||| |||||||| |||||||||||| |||||||
Sbjct 1191 AGTCGATGCAAACTCTAAGATTATTATCTGTCTTTATGCATTGGGGAGGATGCGAGCGGT 1250
Query 1128 TTGGGGAGATGACGCATTGGAATTCAAGCCAGAAAGATGGGTTTCTGACAAGGGAAGCTT 1187
||||||||| |||||| | ||||||||||||| |||||| |||| || || ||| || |
Sbjct 1251 TTGGGGAGAAGACGCAACGCAATTCAAGCCAGAGAGATGGATTTCGGAGAATGGAGGCAT 1310
Query 1188 AAGACATGAGCCCTCCT-TCAAGTTCTTATCGTTTAATTCTGGTCCAAGAACTTGTCTAG 1246
|| ||||||||| |||| | ||||| ||| | |||||| | |||||||||||||||||||
Sbjct 1311 AAAACATGAGCCATCCTAT-AAGTTTTTAGCATTTAATGCCGGTCCAAGAACTTGTCTAG 1369
Query 1247 GTAAACATTTAGCTATGACTCAAATGAAGATGGTGGCCGTGGAGATATTAC-ACAACTAT 1305
||||||||||||||||||||||||||||||| |||| |||| |||||||| | |||||
Sbjct 1370 GTAAACATTTAGCTATGACTCAAATGAAGATAATGGCAGTGGTGATATTACGA-AACTAC 1428
Query 1306 GAGATTAAAGTTATTAAAGGGCAAAAGATTAAGCCAGTTCTTGG-TTTCATATTGTCTAT 1364
|| || || ||| | ||||||| |||||| ||||| |||||| ||| |||||||| ||
Sbjct 1429 GACATCAAGGTTCTCCAAGGGCAGAAGATTGTGCCAGCTCTTGGCTTT-ATATTGTCAAT 1487
Query 1365 GAAGCATGGACTTAGGATCACAATTACTAAGAGATGT 1401
||| ||||| |||| |||||| ||||||||||||||
Sbjct 1488 GAAACATGGTCTTAAAATCACAGTTACTAAGAGATGT 1524
> Ahg952035 jgi|Araly1|952035|scaffold_31100001.1
Length=1591
Score = 765 bits (414), Expect = 0.0
Identities = 1133/1461 (78%), Gaps = 125/1461 (9%)
Strand=Plus/Plus
Query 20 TGGTGCTCCACAGGATCTATGACTAT-ATC-GTTGAGATTCTCGAAATCTCTGATTTGAC 77
||||||||||| | ||||| |||| | | | || ||| |||| |||| | | || || ||
Sbjct 165 TGGTGCTCCACCGTATCTACGACT-TCA-CTGTGGAGCTTCTTGAAAACACCGAGTTAAC 222
Query 78 ATTTTCATTCAAGGGACCGTGGTTCGCCGGAATGGATA-CCTTGCTCACGGTTGATCCAG 136
|||| |||||||||||||||||||||| |||||||||| | ||||||| | ||||||||
Sbjct 223 ATTTCCATTCAAGGGACCGTGGTTCGCTGGAATGGATATGC-TGCTCACAGCTGATCCAG 281
Query 137 CTAACATTCA-T-CATATGATGAACTCAAACTTCTCAAATTACATCAAAGGATCTGATTT 194
|||| ||| | | | || | | |||||||||||||| |||| | ||||| || | ||
Sbjct 282 CTAATATTTACTACCTA-G-TAAACTCAAACTTCTCCAATTTTGTTAAAGGTTCCAACTT 339
Query 195 CAAAGAAG-TTTTTGATGTCTTCGGAGACGGAATTA-TCACCACGGACTC--TGAGCTAT 250
||||| || | ||||||| ||||| ||| | ||| |||| | |||||| || || ||
Sbjct 340 CAAAG-AGATCTTTGATGCCTTCGAAGA-TGCTTTACTCACAAAGGACTCGTTG-GC-AT 395
Query 251 GGAAGAATCTAAGG-AAGTCTTATCAAGAAATGCTCCATCATCAAGCGTTTCAAAGCTTT 309
|||||||||| ||| ||| ||| ||| | ||| || | ||||||| ||||||||| ||
Sbjct 396 GGAAGAATCTGAGGAAAG-CTTCTCAGGCCATGATCAACCATCAAGGGTTTCAAAGATTG 454
Query 310 TCATTGAGTACCACAAGAAGTAAACTCAAGGACGGGCTTGTTCCTCTTCTT-AATCATTT 368
||||||| |||||| ||||||||| | ||||||||||||||||| ||| || |||||| |
Sbjct 455 TCATTGACTACCACGAGAAGTAAAGTTAAGGACGGGCTTGTTCCACTT-TTCAATCATAT 513
Query 369 TGC-AGAGGAAGGAACAACTGTGGATTTGCAAGATGTGCTT-GGGAGGTTCACTTTCGAT 426
|| | |||||| |||||||| ||||||||||||||| || |||||||||| ||||||
Sbjct 514 CGCTCG-GGAAGGCACAACTGTAGATTTGCAAGATGTG-TTCTGGAGGTTCACGTTCGAT 571
Query 427 ACAATCT-TA-ATCCTTA-TAACC-GGT-T-CTGATCCTAGATCTCTCTCCATTGAAATG 480
|||| || || | | | ||||| ||| | ||||||||||||||||||||||||||||
Sbjct 572 ACAA-CTCTAGTTAC--AGTAACCGGGTGTGATGATCCTAGATCTCTCTCCATTGAAATG 628
Query 481 CATGAGGA-T-GAATTAGCTAAAGCTCTCGACGTTGTTGGAGAAGGGATTTTCTT-TAGG 537
| || | | || | ||||||||||| ||| | ||| ||||||||| | || ||||
Sbjct 629 CC--AGTAATTGAGTCCGCTAAAGCTCTGGACACTATTGTAGAAGGGATCGT-TTATAGG 685
Query 538 CATGTTAAACCAA-AGTTCTTGTGGAAGCTGCAAAACTGGATGGGATTTGG-ACACGAGA 595
||||||||||| | | |||||||||||||| |||| |||| | ||| | || | | ||||
Sbjct 686 CATGTTAAACCTAGA-TTCTTGTGGAAGCTACAAAGCTGGGTCGGAGTCGGGATA-GAGA 743
Query 596 AGAAGATGATTGAAGCTAATGCAACCTTTGACCGTGTCTGCGCGAAATACATATCAGACA 655
|||||||||| |||||| ||| | ||||| || || || |||||||||||||||| ||
Sbjct 744 AGAAGATGATAGAAGCTGGTGCCATTTTTGATCGAGTGTGTGCGAAATACATATCAGCCA 803
Query 656 AGAGAGGAGAGATTATAAGATCACAAAGGTTTAGTGATATTTCCTATGGAGAACCTGAGG 715
||||| |||||||| |||||||||| || ||| ||| |||||||| |||
Sbjct 804 GGAGAGAAGAGATTAAAAGATCACAAGGGATTA---ATA------ATGGAGAAAGTGAAC 854
Query 716 ATCTTTT-ATCTTC-CTTCATGAAGCTAGATACAACCAAGTACAATCTCTTGAATCCAAG 773
||||||| | | || | ||| ||||| ||||||||||||||| | ||| || |||| |
Sbjct 855 ATCTTTTGA-CATCTCA-CATAAAGCTTGATACAACCAAGTACCAGCTCATGGATCCTA- 911
Query 774 TGAC-GATAAGTTCCTCAGAGACACTAT-TTTGGCTTT-CATTCTAGC-GGGAAGAGATA 829
| | |||||||||||| |||||| | | |||| |||| | ||||||| |||| ||||||
Sbjct 912 TCAATGATAAGTTCCTCCGAGACAATGTCTTTG-CTTTAC-TTCTAGCTGGGA-GAGATA 968
Query 830 CCACTGCATCTGCTCTCACTTGGTTCTTCTGGCTTCTCTCTGAAAACGCTCAAGTGGTGA 889
||||||| |||||||||||||||||||||| | || | || |||||| ||| ||||||||
Sbjct 969 CCACTGCCTCTGCTCTCACTTGGTTCTTCTCGTTTTTGTCCGAAAACCCTCTAGTGGTGA 1028
Query 890 GCAAG-ATTCGCCAAGAGATCATCAACACAAATCCATCAA-A-G-A--A-TGG--A--A- 937
| || |||||||||||||| | | ||| | || | ||| | | | | ||| | |
Sbjct 1029 -CTAGGATTCGCCAAGAGAT--TGA-CACGATTCTACCAAGAAGTAGTAGTGGCCACGAG 1084
Query 938 ATGGCCAA---G--A-G-AAT----T--T-AGACAAGTTGGTGTATTTACATGGT-GCGT 982
| ||||| | | | ||| | | | ||||||| ||||||||||| || || |
Sbjct 1085 A-GGCCATCTTGTGATGCAATGGAGTACTTAAACAAGTTAGTGTATTTACA-GGCCGCAT 1142
Query 983 TGTGTGAAGCAATGAGACTCTATCCACCAGTTTCCTTTGG-GCGCAAGTCTCCTATCA-A 1040
|||||||| ||||||| || | ||||| ||| ||| | | ||| ||||||| | | |
Sbjct 1143 TGTGTGAAACAATGAGGCTTTGCCCACCGGTT-CCTCTCGAGCGTTTGTCTCCTGT-AGA 1200
Query 1041 ATCAGATGTGCTTCCAAGTGGCCATAAAGTCCAAGCAAACTCTAAGATTATAATCTGCCT 1100
||||||||||||||||||||| ||||||||| |||||||||| || ||| | ||| |
Sbjct 1201 ATCAGATGTGCTTCCAAGTGGACATAAAGTCGAAGCAAACTCAAATATTTTGGTCTTTAT 1260
Query 1101 TTATGCGTTGGGGAGGATGAGAGCGGTTTGGGGAGATGACGCATTGGAATTCAAGCCAGA 1160
||||| | |||| ||||||||||| || |||||||| || |||| ||||||||||||||
Sbjct 1261 TTATGGGGTGGGTAGGATGAGAGCTGTATGGGGAGAAGATGCATCAGAATTCAAGCCAGA 1320
Query 1161 AAGATGGGTTTCTGACAAGGGA-AGCTTAAGACATG-AGCCCT-CCTTCAAGTTCTTATC 1217
|||||| |||| || | ||| || || ||||||| | || | |||||||||||||| |
Sbjct 1321 GAGATGGATTTCCGAGACCGGAGAG-TTGAGACATGTA-CC-TGCCTTCAAGTTCTTAGC 1377
Query 1218 GTTTAATTCTGGTCCAAGAACT-TGTCTAGGTAAACATTTAGCTATGACTCAAATGAAGA 1276
|| ||| | || ||||||| | || || |||||||| ||||||||| |||||||||||
Sbjct 1378 ATTCAATGCCGGCCCAAGAA-TATGCCTCGGTAAACAAATAGCTATGATTCAAATGAAGA 1436
Query 1277 TGGTGGCCGTGGAGATATTACACAACTATGAGATTAAAGTTATTAAAGGGCAAAAGATT- 1335
| |||||||||||||||||||| |||||||| ||||| ||| |||||||| ||| ||
Sbjct 1437 TTGTGGCCGTGGAGATATTACAAAACTATGACATTAAGGTTGCCAAAGGGCAGAAGTTTG 1496
Query 1336 AAGCCAGTT-CTTGGTTTCATATTGTCTA---TGAAGCATGGACTTA-GGATCACAATTA 1390
|| |||| | || | ||| | ||| | || |||||||||| ||| || | || ||||
Sbjct 1497 AA-CCAGATACTAG-TTT-A-ATTCT-TAGAATGAAGCATGGGTTTAAGGTT-ACGATTA 1550
Query 1391 -CTAAGAGATGTCCATATTGA 1410
| ||||||||| ||| ||||
Sbjct 1551 AC-AAGAGATGTTCATTTTGA 1570
> Ahg331566 jgi|Araly1|331566|fgenesh1_pm.C_scaffold_8000909
Length=1482
Score = 737 bits (399), Expect = 0.0
Identities = 1102/1423 (77%), Gaps = 121/1423 (9%)
Strand=Plus/Plus
Query 56 TTCTCGAAATCTCTGATTTGACATTTTCATTCAAGGGACCGTGGTTCGCCGGAATGGATA 115
|||| |||| | | || || |||||| |||||||||||||||||||||| ||||||||||
Sbjct 113 TTCTTGAAAGCACCGAGTTAACATTTCCATTCAAGGGACCGTGGTTCGCTGGAATGGATA 172
Query 116 -CCTTGCTCACGGTTGATCCAGCTAACATTCA-T-CATATGATGAACTCAAACTTCTCAA 172
| ||||||| | |||||||||||| ||| | | | || | | |||||||||||||| |
Sbjct 173 TGC-TGCTCACAGCTGATCCAGCTAATATTTACTACCTA-G-TAAACTCAAACTTCTCCA 229
Query 173 ATTACATCAAAGGATCTGATTTCAAAGAAG-TTTTTGATGTCTTCGGAGACGGAATTA-T 230
||| | ||||| || | ||||||| || | ||||||| ||||| ||| | ||| |
Sbjct 230 ATTTTGTTAAAGGTTCCAACTTCAAAG-AGATCTTTGATGCCTTCGAAGA-TGCTTTACT 287
Query 231 CACCACGGACTC--TGAGCTATGGAAGAATCTAAGG-AAGTCTTATCAAGAAATGCTCCA 287
||| | |||||| || || |||||||||||| || ||| ||| ||| | ||| || |
Sbjct 288 CACAAAGGACTCGTTG-GC-ATGGAAGAATCTGCGGAAAG-CTTCTCAGGCCATGATCAA 344
Query 288 TCATCAAGCGTTTCAAAGCTTTTCATTGAGTACCACAAGAAGTAAACTCAAGGACGGGCT 347
||||||| ||||||||| || ||||||| |||||| ||||||||| | |||||||||||
Sbjct 345 CCATCAAGGGTTTCAAAGATTGTCATTGACTACCACGAGAAGTAAAGTTAAGGACGGGCT 404
Query 348 TGTTCCTCTTCTT-AATCATTTTGC-AGAGGAAGGAACAACTGTGGATTTGCAAGATGTG 405
|||||| ||| || |||||| | || | |||||| |||||||| |||||||||||||||
Sbjct 405 TGTTCCACTT-TTCAATCATATCGCTCG-GGAAGGCACAACTGTAGATTTGCAAGATGTG 462
Query 406 CTT-GGGAGGTTCACTTTCGATACAATCT-TA-ATCCTTA-TAACC-GGT-T-CTGATCC 458
|| |||||||||| |||||||||| || || | | | ||||| ||| | ||||||
Sbjct 463 -TTCTGGAGGTTCACGTTCGATACAA-CTCTAGTTAC--AGTAACCGGGTGTGATGATCC 518
Query 459 TAGATCTCTCTCCATTGAAATGCATGAGGA-T-GAATTAGCTAAAGCTCTCGACGTTGTT 516
||||||||||||||||||||||| || | | || | ||||||||||| ||| | ||
Sbjct 519 TAGATCTCTCTCCATTGAAATGCC--AGTAATTGAGTCCGCTAAAGCTCTGGACACTATT 576
Query 517 GGAGAAGGGATTTTCTT-TAGGCATGTTAAACCAA-AGTTCTTGTGGAAGCTGCAAAACT 574
| |||||| || | || ||||||||||||||| | | |||||||||||||| |||| ||
Sbjct 577 GTAGAAGGAATCGT-TTATAGGCATGTTAAACCTAGA-TTCTTGTGGAAGCTACAAAGCT 634
Query 575 GGATGGGATTTGG-ACACGAGAAGAAGATGATTGAAGCTAATGCAACCTTTGACCGTGTC 633
|| | ||| | || | | |||||||||||||| |||||| ||| | ||||| || ||
Sbjct 635 GGGTCGGAGTCGGGATA-GAGAAGAAGATGATAGAAGCTGGTGCCATTTTTGATCGAGTG 693
Query 634 TGCGCGAAATACATATCAGACAAGAGAGGAGAGATTATAAGATCACAAAGGTTTAGTGAT 693
|| |||||||||||||||| || ||||| |||||||| |||||||||| || ||| ||
Sbjct 694 TGTGCGAAATACATATCAGCCAGGAGAGAAGAGATTAAAAGATCACAAGGGATTA---AT 750
Query 694 ATTTCCTATGGAGAACCTGAGGATCTTTT-ATCTTC-CTTCATGAAGCTAGATACAACCA 751
| |||||||| ||| ||||||| | | || | ||| ||||| ||||||||||
Sbjct 751 A------ATGGAGAAAGTGAACATCTTTTGA-CATCTCA-CATAAAGCTTGATACAACCA 802
Query 752 AGTACAATCTCTTGAATCCAAGTGAC-GATAAGTTCCTCAGAGACACTAT-TTTGGCTTT 809
||||| | ||| || |||| | | | |||||||||||| |||||| | | |||| ||||
Sbjct 803 AGTACCAGCTCATGGATCCTA-TCAATGATAAGTTCCTCCGAGACAATGTCTTTG-CTTT 860
Query 810 -CATTCTAGC-GGGAAGAGATACCACTGCATCTGCTCTCACTTGGTTCTTCTGGCTTCTC 867
| ||||||| |||| ||||||||||||| |||||||||||||||||||||| | || |
Sbjct 861 AC-TTCTAGCTGGGA-GAGATACCACTGCCTCTGCTCTCACTTGGTTCTTCTCGTTTTTG 918
Query 868 TCTGAAAACGCTCAAGTGGTGAGCAAG-ATTCGCCAAGAGATCATCAACACAAATCCATC 926
|| |||||| ||| |||||||| | || |||||||||||||| | | ||| | || | |
Sbjct 919 TCCGAAAACCCTCTAGTGGTGA-CTAGGATTCGCCAAGAGAT--TGA-CACGATTCTACC 974
Query 927 AA-A-G-A--A-TGG--A--A-ATGGCCAA---G--A-G-AAT----T--T-AGACAAGT 961
|| | | | | ||| | | | ||||| | | | ||| | | | ||||||
Sbjct 975 AAGAAGTAGTAGTGGCCACGAGA-GGCCATCTTGTGATGCAATGGAGTACTTAAACAAGT 1033
Query 962 TGGTGTATTTACATGGT-GCGTTGTGTGAAGCAATGAGACTCTATCCACCAGTTTCCTTT 1020
| ||||||||||| || || ||||||||| ||||||| || | ||||| ||| ||| |
Sbjct 1034 TAGTGTATTTACA-GGCCGCATTGTGTGAAACAATGAGGCTTTGCCCACCGGTT-CCTCT 1091
Query 1021 GG-GCGCAAGTCTCCTATCA-AATCAGATGTGCTTCCAAGTGGCCATAAAGTCCAAGCAA 1078
| ||| ||||||| | | |||||||||||||||||||||| ||||||||| ||||||
Sbjct 1092 CGAGCGTTTGTCTCCTGT-AGAATCAGATGTGCTTCCAAGTGGACATAAAGTCGAAGCAA 1150
Query 1079 ACTCTAAGATTATAATCTGCCTTTATGCGTTGGGGAGGATGAGAGCGGTTTGGGGAGATG 1138
|||| || ||| | ||| |||||| | |||| ||||||||||| || |||||||| |
Sbjct 1151 ACTCAAATATTTTGGTCTTTATTTATGGGGTGGGTAGGATGAGAGCTGTATGGGGAGAAG 1210
Query 1139 ACGCATTGGAATTCAAGCCAGAAAGATGGGTTTCTGACAAGGGA-AGCTTAAGACATG-A 1196
| |||| |||||||||||||| |||||| |||| || | ||| || || ||||||| |
Sbjct 1211 ATGCATCAGAATTCAAGCCAGAGAGATGGATTTCCGAGACCGGAGAG-TTGAGACATGTA 1269
Query 1197 GCCCT-CCTTCAAGTTCTTATCGTTTAATTCTGGTCCAAGAACT-TGTCTAGGTAAACAT 1254
|| | |||||||||||||| | || ||| | || ||||||| | || || ||||||||
Sbjct 1270 -CC-TGCCTTCAAGTTCTTAGCATTCAATGCCGGCCCAAGAA-TATGCCTCGGTAAACAA 1326
Query 1255 TTAGCTATGACTCAAATGAAGATGGTGGCCGTGGAGATATTACACAACTATGAGATTAAA 1314
||||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1327 ATAGCTATGATTCAAATGAAGATTGTGGCCGTGGAGATATTACAAAACTATGACATTAAG 1386
Query 1315 GTTATTAAAGGGCAAAAGATT-AAGCCAGTT-CTTGGTTTCATATTGTCTA---TGAAGC 1369
||| |||||||| ||| || || |||| | || | ||| | ||| | || ||||||
Sbjct 1387 GTTGCCAAAGGGCAGAAGTTTGAA-CCAGATACTAG-TTT-A-ATTCT-TAGAATGAAGC 1441
Query 1370 ATGGACTTA-GGATCACAATTA-CTAAGAGATGTCCATATTGA 1410
|||| ||| || | || |||| | ||||||||| ||| ||||
Sbjct 1442 ATGGGTTTAAGGTT-ACGATTAAC-AAGAGATGTTCATTTTGA 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5