BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39510.1
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490728 jgi|Araly1|490728|fgenesh2_kg.7__161__AT4G39510.1 2418 0.0
Ahg352944 jgi|Araly1|352944|fgenesh1_pg.C_scaffold_7000117 2314 0.0
Ahg952035 jgi|Araly1|952035|scaffold_31100001.1 745 0.0
Ahg331566 jgi|Araly1|331566|fgenesh1_pm.C_scaffold_8000909 675 0.0
> Ahg490728 jgi|Araly1|490728|fgenesh2_kg.7__161__AT4G39510.1
Length=1587
Score = 2418 bits (1309), Expect = 0.0
Identities = 1484/1567 (95%), Gaps = 17/1567 (1%)
Strand=Plus/Plus
Query 158 AAACCAAGCTCCTAACTCTCTCATATGGCTTCTG-TAAGCTTACTTGACG-TTGCCATAG 215
||| ||||||||||||| |||||||||||||| | ||||||||||||||| || ||||||
Sbjct 28 AAATCAAGCTCCTAACTTTCTCATATGGCTTC-GATAAGCTTACTTGACGCTT-CCATAG 85
Query 216 CCATCATTTGCCTTT-TCTTCTTCTATTACATGT-A-CTTCAAGAAACCTCATGGTCAGG 272
|||| ||||| |||| |||||||| ||| | | | | |||||| |||||||||| |||||
Sbjct 86 CCATTATTTG-CTTTCTCTTCTTCCATTTC-T-TCATCTTCAAAAAACCTCATGATCAGG 142
Query 273 TTTTTCGAAACTGGCCAGTTATTGGGATGCTTCCAGGCTTCCTGATGGTTCTCCACCGCA 332
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 143 TTTTTCGGAACTGGCCAGTTATTGGGATGATT---GGCTTCCTGATGGTTCTCCACCGCA 199
Query 333 TCTACAACTTCGGCGTGGAGGCTCTTGAAATGAGCCACTTAACCTTTCTATTTAAGGGAC 392
| ||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 200 TGTACAACTTCGGTGTGGAGGCTCTCGAAATCAGCCACTTAACCTTTCCATTTAAGGGAC 259
Query 393 CGTGGTTCGCTGAAATGGATATGTTGTTCACAGTTGATCCAGCTAATATTCACTACATAT 452
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 260 CGTGGTTCGCTGGAATGGATATGTTGTTCACAGTTGATCCAGCTAATATTCACTACATCT 319
Query 453 TGAGCTCAAACTTCTCCAACTATACCAAAGGTGCCGACTTTAAAGAAGTCTTTGATGTTT 512
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 320 TGAGCTCAAACTTCTCCAATTACACCAAAGGTGCCGACTTTAAAGAAGTCTTTGATGTTT 379
Query 513 TTGGAGAAATGATCTTTAGTTCGGACTCGGAGCTATGGAAGAATCAAAGAAAAGCTGCTC 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTGGAGAAATGATCTTTAGTTCGGACTCGGAGCTATGGAAGAATCAAAGAAAAGCTGCTC 439
Query 573 AATTCATGCTTAATCATCAAG-GCTTTCAAAAGCTATCATTGAGTGCAACGAGGAGTAAG 631
| ||||||||||| ||||| | | ||||||||||| ||| ||||||||||||||| |||
Sbjct 440 AGTTCATGCTTAACCATCACGAG-TTTCAAAAGCTTTCAATGAGTGCAACGAGGACTAAA 498
Query 632 CTTTACGATGGTCTTGTTCCTCTTTTCAATCAATGTTGTGAGGAAGAGAAGGTCGTGGAT 691
|||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 499 CTTTACGACGGTCTTGTTCCTCTTTTCAATCAATATTGCGAGGAAGAGAAGGTCGTGGAT 558
Query 692 TTGCAGCAAGTGTTTCAAAGATTCACTTTTGATACAACTTTCTTTATTGTTACCGGGTTT 751
|||||||||||||||||||| ||||||||||| |||||||| ||| | ||||| |||| |
Sbjct 559 TTGCAGCAAGTGTTTCAAAGGTTCACTTTTGACACAACTTTTTTTCTCGTTACGGGGTCT 618
Query 752 GATCCTAAATCTCTCTCTATTGAAATGCCGGAAGTGGAGTATGCTAAAGCTCTTGACGAT 811
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 619 GATCCTAAATCTCTCTCTATTGAAATGCCGGAAGTTGAGTATGCTAAAGCTCTTGACGAT 678
Query 812 CTTGGAGAAGGGATTTTTTATAGGCACATTAAACCGAAGTTCTTCTGGAAGCTGCAAAAC 871
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 679 CTTGGAGAAGGGATTTTTTATAGGCACATTAAACCGAAGTTCTTGTGGAAGCTGCAAAAC 738
Query 872 CGGTTTGGGTTAGGGCAAGAGAAGAGGATGACTGAAGCTGATGCCACTTTTGATCGCGTT 931
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 739 CGGTTTGGGTTAGGACAAGAGAAGAGGATGACCGAAGCTGATGCCACTTTTGATCGCGTT 798
Query 932 TCTGCGAAATACATATTAGCTAAGAGAGAAGAGATAAGGTCACAGGGGATTGATCATCAT 991
|| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 799 TCAGCGAAATACATATCAGCTAAGAGAGAAGAGATAAGATCACAAGGGATTGATCATCAT 858
Query 992 GCAAATGGTGAAAGTGAGGATCTTTTGACATCTCACATAAAGCTTGATACAACCAAGTAC 1051
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TCAAATGGTCAAAGTGAGGATCTTTTGACATCTCACATAAAGCTTGATACAACCAAGTAC 918
Query 1052 GAGCTCTTGAACCCGAGTGATGATAAGTTCCTCAGAGACACCATCTTAGCTTTCAATCTT 1111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAGCTCTTGAACCCGAGTGATGATAAGTTCCTCAGAGACACCATCTTAGCTTTCAATCTA 978
Query 1112 GCTGGGAGAGACACAACGTCTTCTGCTCTCTCTTGGtttttttGGCTTCTCTCTGAAAAC 1171
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 979 GCTGGGAGAGACACAATGTCTTCTGCTCTCTCTTGGTTCTTTTGGCTTCTCTCTGAAAAC 1038
Query 1172 CCTCAAGTTGTAACAAAGATTCGTAAAGAGATCATC-GACAAAAATATTTCAAAAGACGG 1230
|||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 1039 CCTCAAGTTGTAACAAAGATTCGTAAAGAGATCATCAG-CAAAAATATATCAAAAGACGG 1097
Query 1231 AAGAAATGGCCAAGAGAACTTAGACAAGTTGGTCTACTTACATGCGGCGTTGTATGAATC 1290
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1098 AAGAAATGGCCAAGAGAACTTAGACAAGTTGGTCTACTTACATGCCGCGTTGTATGAATC 1157
Query 1291 AATGAGGCTCTATCCACCGGTTGCCTTCCAACGCAAGTCTCCTATAAAGCCAGATGTGCT 1350
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1158 AATGAGGCTCTATCCACCGGTTGCCTTCCAACGCAAGTCTCCTATAAAACCAGATTTGCT 1217
Query 1351 GCCAAGTGGGCATAAGGTAGAAGCAAACTCAGTCATCATAATTTTTCTTTTCGCGTTGGG 1410
|||||||||||||||||||| |||||||||||||||||||| ||||||| || ||||||
Sbjct 1218 TCCAAGTGGGCATAAGGTAGATGCAAACTCAGTCATCATAATCTTTCTTTACGGGTTGGG 1277
Query 1411 AAGGATGAGAGCGGTTTGGGGAGAAGATGCAACAGAGTTCAAGCCAGAGAGATGGGTTTC 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AAGGATGAGAGCGGTTTGGGGAGAAGATGCAACAGAGTTCAAGCCAGAGAGATGGGTTTC 1337
Query 1471 TGAGTCCGGTGGGTTGAGACATGCACCTTCCTTCAAGTTTTTATCATTTAACGCCGGTCC 1530
|||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1338 TGAGACCGGTGGGTTGAGACATGCGCCTTCCTTCAAGTTCTTATCGTTTAACGCCGGTCC 1397
Query 1531 GAGAACTTGTCCTGGTAAGCAATTAGCTATGACTCTAATGAAGACCGTAGTTGTGGAGAT 1590
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1398 GAGAACTTGTCCTGGTAAGCAATTAGCTATGACTCTAATGAAGACAGTAGTTGTGGAGAT 1457
Query 1591 ATTACAAAACTATGATATTGATGTTATCAAAGGACAGAAGATTGAGCCAGAACCTGGTCT 1650
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1458 ATTACAAAACTATGATATTAAGGTTATCAAAGGACAGAAGATTGAGCCAGAACCTGGTCT 1517
Query 1651 TATGTTGCACATGAAGCATGGGCTTAGAGTCACAATTACTAAGAGATGTTCAGCTTGAAA 1710
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1518 TATGTTGCACATGAAGCATGGGCTTAAAGTCACAATTACTAAGAGATGTTCAGCTTGAAA 1577
Query 1711 TTTGTAT 1717
||| |||
Sbjct 1578 TTTATAT 1584
> Ahg352944 jgi|Araly1|352944|fgenesh1_pg.C_scaffold_7000117
Length=2985
Score = 2314 bits (1253), Expect = 0.0
Identities = 1422/1502 (95%), Gaps = 17/1502 (1%)
Strand=Plus/Plus
Query 182 ATGGCTTCTG-TAAGCTTACTTGACG-TTGCCATAGCCATCATTTGCCTTT-TCTTCTTC 238
|||||||| | ||||||||||||||| || |||||||||| ||||| |||| ||||||||
Sbjct 1 ATGGCTTC-GATAAGCTTACTTGACGCTT-CCATAGCCATTATTTG-CTTTCTCTTCTTC 57
Query 239 TATTACATGT-A-CTTCAAGAAACCTCATGGTCAGGTTTTTCGAAACTGGCCAGTTATTG 296
||| | | | | |||||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct 58 CATTTC-T-TCATCTTCAAAAAACCTCATGATCAGGTTTTTCGGAACTGGCCAGTTATTG 115
Query 297 GGATGCTTCCAGGCTTCCTGATGGTTCTCCACCGCATCTACAACTTCGGCGTGGAGGCTC 356
||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 116 GGATGATT---GGCTTCCTGATGGTTCTCCACCGCATGTACAACTTCGGTGTGGAGGCTC 172
Query 357 TTGAAATGAGCCACTTAACCTTTCTATTTAAGGGACCGTGGTTCGCTGAAATGGATATGT 416
| ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 173 TCGAAATCAGCCACTTAACCTTTCCATTTAAGGGACCGTGGTTCGCTGGAATGGATATGT 232
Query 417 TGTTCACAGTTGATCCAGCTAATATTCACTACATATTGAGCTCAAACTTCTCCAACTATA 476
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 233 TGTTCACAGTTGATCCAGCTAATATTCACTACATCTTGAGCTCAAACTTCTCCAATTACA 292
Query 477 CCAAAGGTGCCGACTTTAAAGAAGTCTTTGATGTTTTTGGAGAAATGATCTTTAGTTCGG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CCAAAGGTGCCGACTTTAAAGAAGTCTTTGATGTTTTTGGAGAAATGATCTTTAGTTCGG 352
Query 537 ACTCGGAGCTATGGAAGAATCAAAGAAAAGCTGCTCAATTCATGCTTAATCATCAAG-GC 595
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 353 ACTCGGAGCTATGGAAGAATCAAAGAAAAGCTGCTCAGTTCATGCTTAACCATCACGAG- 411
Query 596 TTTCAAAAGCTATCATTGAGTGCAACGAGGAGTAAGCTTTACGATGGTCTTGTTCCTCTT 655
||||||||||| ||| ||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 412 TTTCAAAAGCTTTCAATGAGTGCAACGAGGACTAAACTTTACGACGGTCTTGTTCCTCTT 471
Query 656 TTCAATCAATGTTGTGAGGAAGAGAAGGTCGTGGATTTGCAGCAAGTGTTTCAAAGATTC 715
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 472 TTCAATCAATATTGCGAGGAAGAGAAGGTCGTGGATTTGCAGCAAGTGTTTCAAAGGTTC 531
Query 716 ACTTTTGATACAACTTTCTTTATTGTTACCGGGTTTGATCCTAAATCTCTCTCTATTGAA 775
|||||||| |||||||| ||| | ||||| |||| |||||||||||||||||||||||||
Sbjct 532 ACTTTTGACACAACTTTTTTTCTCGTTACGGGGTCTGATCCTAAATCTCTCTCTATTGAA 591
Query 776 ATGCCGGAAGTGGAGTATGCTAAAGCTCTTGACGATCTTGGAGAAGGGATTTTTTATAGG 835
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATGCCGGAAGTTGAGTATGCTAAAGCTCTTGACGATCTTGGAGAAGGGATTTTTTATAGG 651
Query 836 CACATTAAACCGAAGTTCTTCTGGAAGCTGCAAAACCGGTTTGGGTTAGGGCAAGAGAAG 895
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 652 CACATTAAACCGAAGTTCTTGTGGAAGCTGCAAAACCGGTTTGGGTTAGGACAAGAGAAG 711
Query 896 AGGATGACTGAAGCTGATGCCACTTTTGATCGCGTTTCTGCGAAATACATATTAGCTAAG 955
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 712 AGGATGACCGAAGCTGATGCCACTTTTGATCGCGTTTCAGCGAAATACATATCAGCTAAG 771
Query 956 AGAGAAGAGATAAGGTCACAGGGGATTGATCATCATGCAAATGGTGAAAGTGAGGATCTT 1015
|||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 772 AGAGAAGAGATAAGATCACAAGGGATTGATCATCATTCAAATGGTCAAAGTGAGGATCTT 831
Query 1016 TTGACATCTCACATAAAGCTTGATACAACCAAGTACGAGCTCTTGAACCCGAGTGATGAT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTGACATCTCACATAAAGCTTGATACAACCAAGTACGAGCTCTTGAACCCGAGTGATGAT 891
Query 1076 AAGTTCCTCAGAGACACCATCTTAGCTTTCAATCTTGCTGGGAGAGACACAACGTCTTCT 1135
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 892 AAGTTCCTCAGAGACACCATCTTAGCTTTCAATCTAGCTGGGAGAGACACAATGTCTTCT 951
Query 1136 GCTCTCTCTTGGtttttttGGCTTCTCTCTGAAAACCCTCAAGTTGTAACAAAGATTCGT 1195
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GCTCTCTCTTGGTTCTTTTGGCTTCTCTCTGAAAACCCTCAAGTTGTAACAAAGATTCGT 1011
Query 1196 AAAGAGATCATC-GACAAAAATATTTCAAAAGACGGAAGAAATGGCCAAGAGAACTTAGA 1254
|||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1012 AAAGAGATCATCAG-CAAAAATATATCAAAAGACGGAAGAAATGGCCAAGAGAACTTAGA 1070
Query 1255 CAAGTTGGTCTACTTACATGCGGCGTTGTATGAATCAATGAGGCTCTATCCACCGGTTGC 1314
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAAGTTGGTCTACTTACATGCCGCGTTGTATGAATCAATGAGGCTCTATCCACCGGTTGC 1130
Query 1315 CTTCCAACGCAAGTCTCCTATAAAGCCAGATGTGCTGCCAAGTGGGCATAAGGTAGAAGC 1374
|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||
Sbjct 1131 CTTCCAACGCAAGTCTCCTATAAAACCAGATTTGCTTCCAAGTGGGCATAAGGTAGATGC 1190
Query 1375 AAACTCAGTCATCATAATTTTTCTTTTCGCGTTGGGAAGGATGAGAGCGGTTTGGGGAGA 1434
|||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 1191 AAACTCAGTCATCATAATCTTTCTTTACGGGTTGGGAAGGATGAGAGCGGTTTGGGGAGA 1250
Query 1435 AGATGCAACAGAGTTCAAGCCAGAGAGATGGGTTTCTGAGTCCGGTGGGTTGAGACATGC 1494
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1251 AGATGCAACAGAGTTCAAGCCAGAGAGATGGGTTTCTGAGACCGGTGGGTTGAGACATGC 1310
Query 1495 ACCTTCCTTCAAGTTTTTATCATTTAACGCCGGTCCGAGAACTTGTCCTGGTAAGCAATT 1554
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GCCTTCCTTCAAGTTCTTATCGTTTAACGCCGGTCCGAGAACTTGTCCTGGTAAGCAATT 1370
Query 1555 AGCTATGACTCTAATGAAGACCGTAGTTGTGGAGATATTACAAAACTATGATATTGATGT 1614
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 1371 AGCTATGACTCTAATGAAGACAGTAGTTGTGGAGATATTACAAAACTATGATATTAAGGT 1430
Query 1615 TATCAAAGGACAGAAGATTGAGCCAGAACCTGGTCTTATGTTGCACATGAAGCATGGGCT 1674
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1431 TATCAAAGGACAGAAGATTGAGCCAGAACCTGGTCTTATATTGCACATGAAGCATGGGCT 1490
Query 1675 TA 1676
||
Sbjct 1491 TA 1492
> Ahg952035 jgi|Araly1|952035|scaffold_31100001.1
Length=1591
Score = 745 bits (403), Expect = 0.0
Identities = 1234/1615 (76%), Gaps = 138/1615 (9%)
Strand=Plus/Plus
Query 176 TCTCATATGGCTTCTGTAAGCTTACTT-GACGTTGCCATAGCCATCATTTGCCTTT-TCT 233
|||| ||||||||| ||||||| || || ||| |||||||||||||||| |||| ||
Sbjct 20 TCTCTTATGGCTTCAACAAGCTTAATTGGA-GTTTCCATAGCCATCATTTG-CTTTCTCA 77
Query 234 TCTTCTATTACAT-GTACTTCAAGAAACCTCATGGTCAGGTT--TT-TCGA--AACTGGC 287
|| || || | | | |||||||||||||| | || ||| || | | |||||||
Sbjct 78 TCCTCCATCGCTTCCT-CTTCAAGAAACCTCTTTACCA-GTTCCTTAT-AATTAACTGGC 134
Query 288 CAGTTATT-GGGATGCTTCCAGG-C-TTCCTGATGGTTCTCCACCGCATCTACAACTTCG 344
| | | || |||||| |||| || | || || |||| |||||||| |||||| |||||
Sbjct 135 C-GGTGTTGGGGATGATTCCGGGTCTTTTCT--TGGTGCTCCACCGTATCTACGACTTC- 190
Query 345 GC-GTGGAGGC-TCTTGAAATGAGCC-ACTTAACCTTTCTATTTAAGGGACCGTGGTTCG 401
| ||||| || |||||||| | || | ||||| |||| ||| ||||||||||||||||
Sbjct 191 ACTGTGGA-GCTTCTTGAAAACA-CCGAGTTAACATTTCCATTCAAGGGACCGTGGTTCG 248
Query 402 CTGAAATGGATATGTTGTTCACAGTTGATCCAGCTAATATTCACTACATATTGAGCTCAA 461
||| |||||||||| || |||||| |||||||||||||||| ||||| || | | |||||
Sbjct 249 CTGGAATGGATATGCTGCTCACAGCTGATCCAGCTAATATTTACTACCTAGTAAACTCAA 308
Query 462 ACTTCTCCAACTATACCAAAGGTGCCGACTTTAAAGAAG-TCTTTGATGTTTTTGGAGAA 520
|||||||||| | | |||||| || |||| |||| || ||||||||| || || |
Sbjct 309 ACTTCTCCAATTTTGTTAAAGGTTCCAACTTCAAAG-AGATCTTTGATG-CCTTCGA-AG 365
Query 521 ATGATCTTTAGT-TC---GGACTCG--GAGCTATGGAAGAATCAAAGAAAAGCTGCTCAA 574
||| ||||| | | ||||||| | || ||||||||||| || |||||| ||||
Sbjct 366 ATG--CTTTACTCACAAAGGACTCGTTG-GC-ATGGAAGAATCTGAGGAAAGCTTCTCAG 421
Query 575 TTCATGCTTAATCATCAAGGCTTTCAAAAG-CTATCATTGAGTGCAACGAGGAGT-AAGC 632
|||| | || |||||||| |||| |||| | ||||||| | | ||||| ||| |||
Sbjct 422 GCCATGATCAACCATCAAGGGTTTC-AAAGATTGTCATTGACTACCACGAGAAGTAAAG- 479
Query 633 TTTACGATGGTCTTGTTCCTCTTTTCAATCAATGTTG-T-GAGGAA-G-AGAAGGTCGTG 688
|| | || || |||||||| |||||||||| || | | | | |||| | | || | ||
Sbjct 480 TTAAGGACGGGCTTGTTCCACTTTTCAATC-ATATCGCTCG-GGAAGGCACAA-CT-GTA 535
Query 689 GATTTGC-AGCAAGTGTTTC-AAAGATTCACTTTTGATACAACTTTCTTTATTGTTACCG 746
||||||| || | ||| ||| || ||||| || ||||||||| | ||| || ||||
Sbjct 536 GATTTGCAAG-ATGTG-TTCTGGAGGTTCACGTTCGATACAACTCTAGTTACAGTAACCG 593
Query 747 GGT-T--TGATCCTAAATCTCTCTCTATTGAAATGCC-GGAAGTGGAGTATGCTAAAGCT 802
||| | |||||||| ||||||||| ||||||||||| | || | |||| |||||||||
Sbjct 594 GGTGTGATGATCCTAGATCTCTCTCCATTGAAATGCCAGTAA-TTGAGTCCGCTAAAGCT 652
Query 803 CTTGACGA-TCTTGGAGAAGGGATTTTTTATAGGCACATTAAACCGAAG-TTCTTCTGGA 860
|| ||| | | ||| ||||||||| |||||||||| ||||||| || ||||| ||||
Sbjct 653 CTGGAC-ACTATTGTAGAAGGGATCGTTTATAGGCATGTTAAACC-TAGATTCTTGTGGA 710
Query 861 AGCTGCAAAACCGGTTTGG-GTTAGGGCA-AGAGAAGAGGATGACT-GAAGCTGATGCCA 917
|||| |||| | || | || | | ||| | |||||||| ||||| | ||||||| |||||
Sbjct 711 AGCTACAAAGCTGGGTCGGAG-TCGGG-ATAGAGAAGAAGATGA-TAGAAGCTGGTGCCA 767
Query 918 CTTTTGATCGCGTTTCTGCGAAATACATATTAGCTAAGAGAGAAGAGA-T--AAGGTCAC 974
||||||||| || | |||||||||||||| ||| | ||||||||||| | ||| ||||
Sbjct 768 TTTTTGATCGAGTGTGTGCGAAATACATATCAGCCAGGAGAGAAGAGATTAAAAGATCAC 827
Query 975 AGGGGATTGATCATCATGCAAATGGTGAAAGTGAGGATCTTTTGACATCTCACATAAAGC 1034
| |||| | | | || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 828 AAGGGA-T--T-A--AT---AATGGAGAAAGTGAACATCTTTTGACATCTCACATAAAGC 878
Query 1035 TTGATACAACCAAGTACGAGCTCTTGAACCCGAGTGA-TGATAAGTTCCTCAGAGACACC 1093
||||||||||||||||| ||||| || | || | | | ||||||||||||| ||||||
Sbjct 879 TTGATACAACCAAGTACCAGCTCATGGATCCTA-TCAATGATAAGTTCCTCCGAGACAAT 937
Query 1094 ATCTTAGCTTTCAAT-CTTGCTGGGAGAGACACAAC-GTCTTCTGCTCTCTCTTGGtttt 1151
|||| ||||| | | || ||||||||||| || || | || |||||||| ||||||| |
Sbjct 938 GTCTTTGCTTT-ACTTCTAGCTGGGAGAGATACCACTGCCT-CTGCTCTCACTTGGTTCT 995
Query 1152 tttGGCTTCTCTCTGAAAACCCTCAAGTTGTAACAAAGATTCGTAAAGAGAT---CATCG 1208
| | | || | || |||||||||| ||| || || | |||||| ||||||| || ||
Sbjct 996 TCTCGTTTTTGTCCGAAAACCCTCTAGTGGTGACTAGGATTCGCCAAGAGATTGACA-CG 1054
Query 1209 A--C-A--AA-AA-TATT--T--CAAA-AGACGGA-A----GAAATGGCCAA-G-AGAAC 1249
| | | || || || | | | | ||| || | | ||| | || | || ||
Sbjct 1055 ATTCTACCAAGAAGTAGTAGTGGCCACGAGA-GGCCATCTTGTGATG-C-AATGGAGTAC 1111
Query 1250 TTAGACAAGTTGGTCTACTTACATGCGGCGTTGTATGAATCAATGAGGCTCTATCCACCG 1309
||| ||||||| || || ||||| || || |||| |||| |||||||||| | ||||||
Sbjct 1112 TTAAACAAGTTAGTGTATTTACAGGCCGCATTGTGTGAAACAATGAGGCTTTGCCCACCG 1171
Query 1310 GTTGCCT-TCCAACGCAAGTCTCCTATA-AAGCCAGATGTGCTGCCAAGTGGGCATAAGG 1367
||| ||| || | || ||||||| || || | ||||||||| |||||||| ||||| |
Sbjct 1172 GTT-CCTCTCGAGCGTTTGTCTCCTGTAGAATC-AGATGTGCTTCCAAGTGGACATAAAG 1229
Query 1368 TAGAAGCAAACTCAG-TCATCATAATTTTTCTTT-TCGCGTTGGGAAGGATGAGAGCGGT 1425
| |||||||||||| | || | | ||| ||| | | || ||| ||||||||||| ||
Sbjct 1230 TCGAAGCAAACTCAAAT-ATTTTGGTCTTTATTTATGGGGT-GGGTAGGATGAGAGCTGT 1287
Query 1426 TTGGGGAGAAGATGCAACAGAGTTCAAGCCAGAGAGATGGGTTTCTGAGTCCGGTGGGTT 1485
||||||||||||||| |||| |||||||||||||||||| |||| ||| |||| | |||
Sbjct 1288 ATGGGGAGAAGATGCATCAGAATTCAAGCCAGAGAGATGGATTTCCGAGACCGGAGAGTT 1347
Query 1486 GAGACATGCACCTTCCTTCAAGTTTTTATCATTTAACGCCGGTCCGAGAACT-TGTCCT- 1543
|||||||| |||| |||||||||| ||| |||| || ||||| || |||| | || |||
Sbjct 1348 GAGACATGTACCTGCCTTCAAGTTCTTAGCATTCAATGCCGGCCCAAGAA-TATG-CCTC 1405
Query 1544 GGTAAGCAATTAGCTATGACTCTAATGAAGACCGTAGTTGTGGAGATATTACAAAACTAT 1603
||||| ||| ||||||||| || |||||||| || | |||||||||||||||||||||
Sbjct 1406 GGTAAACAAATAGCTATGATTCAAATGAAGATTGTGGCCGTGGAGATATTACAAAACTAT 1465
Query 1604 GATATTGATGTTATCAAAGGACAGAAGATTGAGCCAGA-ACCTGGTCTTA-TG-TT-GCA 1659
|| ||| | ||| |||||| |||||| |||| ||||| || | || ||| | || | |
Sbjct 1466 GACATTAAGGTTGCCAAAGGGCAGAAGTTTGAACCAGATAC-TAGT-TTAATTCTTAG-A 1522
Query 1660 CATGAAGCATGGGCTTAGAG-TCACAATTA-CTAAGAGATGTTCAGCTTGAAATT 1712
|||||||||||| ||| || | || |||| | |||||||||||| |||| |||
Sbjct 1523 -ATGAAGCATGGGTTTA-AGGTTACGATTAAC-AAGAGATGTTCATTTTGATATT 1574
> Ahg331566 jgi|Araly1|331566|fgenesh1_pm.C_scaffold_8000909
Length=1482
Score = 675 bits (365), Expect = 0.0
Identities = 1084/1414 (77%), Gaps = 117/1414 (8%)
Strand=Plus/Plus
Query 355 TCTTGAAATG-AGCC-ACTTAACCTTTCTATTTAAGGGACCGTGGTTCGCTGAAATGGAT 412
|||||||| | | || | ||||| |||| ||| ||||||||||||||||||| |||||||
Sbjct 114 TCTTGAAA-GCA-CCGAGTTAACATTTCCATTCAAGGGACCGTGGTTCGCTGGAATGGAT 171
Query 413 ATGTTGTTCACAGTTGATCCAGCTAATATTCACTACATATTGAGCTCAAACTTCTCCAAC 472
||| || |||||| |||||||||||||||| ||||| || | | |||||||||||||||
Sbjct 172 ATGCTGCTCACAGCTGATCCAGCTAATATTTACTACCTAGTAAACTCAAACTTCTCCAAT 231
Query 473 TATACCAAAGGTGCCGACTTTAAAGAAG-TCTTTGATGTTTTTGGAGAAATGATCTTTAG 531
| | |||||| || |||| |||| || ||||||||| || || | ||| |||||
Sbjct 232 TTTGTTAAAGGTTCCAACTTCAAAG-AGATCTTTGATG-CCTTCGA-AGATG--CTTTAC 286
Query 532 T-TC---GGACTCG--GAGCTATGGAAGAATCAAAGAAAAGCTGCTCAATTCATGCTTAA 585
| | ||||||| | || ||||||||||| | |||||| |||| |||| | ||
Sbjct 287 TCACAAAGGACTCGTTG-GC-ATGGAAGAATCTGCGGAAAGCTTCTCAGGCCATGATCAA 344
Query 586 TCATCAAGGCTTTCAAAAG-CTATCATTGAGTGCAACGAGGAGT-AAGCTTTACGATGGT 643
|||||||| |||| |||| | ||||||| | | ||||| ||| ||| || | || ||
Sbjct 345 CCATCAAGGGTTTC-AAAGATTGTCATTGACTACCACGAGAAGTAAAG-TTAAGGACGGG 402
Query 644 CTTGTTCCTCTTTTCAATCAATGTTG-T-GAGGAA-G-AGAAGGTCGTGGATTTGC-AGC 698
|||||||| |||||||||| || | | | | |||| | | || | || ||||||| ||
Sbjct 403 CTTGTTCCACTTTTCAATC-ATATCGCTCG-GGAAGGCACAA-CT-GTAGATTTGCAAG- 457
Query 699 AAGTGTTTC-AAAGATTCACTTTTGATACAACTTTCTTTATTGTTACCGGGT-T--TGAT 754
| ||| ||| || ||||| || ||||||||| | ||| || ||||||| | ||||
Sbjct 458 ATGTG-TTCTGGAGGTTCACGTTCGATACAACTCTAGTTACAGTAACCGGGTGTGATGAT 516
Query 755 CCTAAATCTCTCTCTATTGAAATGCC-GGAAGTGGAGTATGCTAAAGCTCTTGACGA-TC 812
|||| ||||||||| ||||||||||| | || | |||| ||||||||||| ||| | |
Sbjct 517 CCTAGATCTCTCTCCATTGAAATGCCAGTAA-TTGAGTCCGCTAAAGCTCTGGAC-ACTA 574
Query 813 TTGGAGAAGGGATTTTTTATAGGCACATTAAACCGAAG-TTCTTCTGGAAGCTGCAAAAC 871
||| |||||| || |||||||||| ||||||| || ||||| |||||||| |||| |
Sbjct 575 TTGTAGAAGGAATCGTTTATAGGCATGTTAAACC-TAGATTCTTGTGGAAGCTACAAAGC 633
Query 872 CGGTTTGG-GTTAGGGCA-AGAGAAGAGGATGACT-GAAGCTGATGCCACTTTTGATCGC 928
|| | || | | ||| | |||||||| ||||| | ||||||| ||||| |||||||||
Sbjct 634 TGGGTCGGAG-TCGGG-ATAGAGAAGAAGATGA-TAGAAGCTGGTGCCATTTTTGATCGA 690
Query 929 GTTTCTGCGAAATACATATTAGCTAAGAGAGAAGAGA-T--AAGGTCACAGGGGATTGAT 985
|| | |||||||||||||| ||| | ||||||||||| | ||| ||||| |||| | |
Sbjct 691 GTGTGTGCGAAATACATATCAGCCAGGAGAGAAGAGATTAAAAGATCACAAGGGA-T--T 747
Query 986 CATCATGCAAATGGTGAAAGTGAGGATCTTTTGACATCTCACATAAAGCTTGATACAACC 1045
| || ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 748 -A--AT---AATGGAGAAAGTGAACATCTTTTGACATCTCACATAAAGCTTGATACAACC 801
Query 1046 AAGTACGAGCTCTTGAACCCGAGTGA-TGATAAGTTCCTCAGAGACACCATCTTAGCTTT 1104
|||||| ||||| || | || | | | ||||||||||||| |||||| |||| |||||
Sbjct 802 AAGTACCAGCTCATGGATCCTA-TCAATGATAAGTTCCTCCGAGACAATGTCTTTGCTTT 860
Query 1105 CAAT-CTTGCTGGGAGAGACACAAC-GTCTTCTGCTCTCTCTTGGtttttttGGCTTCTC 1162
| | || ||||||||||| || || | || |||||||| ||||||| || | | || |
Sbjct 861 -ACTTCTAGCTGGGAGAGATACCACTGCCT-CTGCTCTCACTTGGTTCTTCTCGTTTTTG 918
Query 1163 TCTGAAAACCCTCAAGTTGTAACAAAGATTCGTAAAGAGAT---CATCGA--C-A--AA- 1213
|| |||||||||| ||| || || | |||||| ||||||| || ||| | | ||
Sbjct 919 TCCGAAAACCCTCTAGTGGTGACTAGGATTCGCCAAGAGATTGACA-CGATTCTACCAAG 977
Query 1214 AA-TATT--T--CAAA-AGACGGA-A----GAAATGGCCAA-G-AGAACTTAGACAAGTT 1260
|| || | | | | ||| || | | ||| | || | || ||||| |||||||
Sbjct 978 AAGTAGTAGTGGCCACGAGA-GGCCATCTTGTGATG-C-AATGGAGTACTTAAACAAGTT 1034
Query 1261 GGTCTACTTACATGCGGCGTTGTATGAATCAATGAGGCTCTATCCACCGGTTGCCT-TCC 1319
|| || ||||| || || |||| |||| |||||||||| | ||||||||| ||| ||
Sbjct 1035 AGTGTATTTACAGGCCGCATTGTGTGAAACAATGAGGCTTTGCCCACCGGTT-CCTCTCG 1093
Query 1320 AACGCAAGTCTCCTATA-AAGCCAGATGTGCTGCCAAGTGGGCATAAGGTAGAAGCAAAC 1378
| || ||||||| || || | ||||||||| |||||||| ||||| || |||||||||
Sbjct 1094 AGCGTTTGTCTCCTGTAGAATC-AGATGTGCTTCCAAGTGGACATAAAGTCGAAGCAAAC 1152
Query 1379 TCAG-TCATCATAATTTTTCTTT-TCGCGTTGGGAAGGATGAGAGCGGTTTGGGGAGAAG 1436
||| | || | | ||| ||| | | || ||| ||||||||||| || ||||||||||
Sbjct 1153 TCAAAT-ATTTTGGTCTTTATTTATGGGGT-GGGTAGGATGAGAGCTGTATGGGGAGAAG 1210
Query 1437 ATGCAACAGAGTTCAAGCCAGAGAGATGGGTTTCTGAGTCCGGTGGGTTGAGACATGCAC 1496
||||| |||| |||||||||||||||||| |||| ||| |||| | ||||||||||| ||
Sbjct 1211 ATGCATCAGAATTCAAGCCAGAGAGATGGATTTCCGAGACCGGAGAGTTGAGACATGTAC 1270
Query 1497 CTTCCTTCAAGTTTTTATCATTTAACGCCGGTCCGAGAACT-TGTCCT-GGTAAGCAATT 1554
|| |||||||||| ||| |||| || ||||| || |||| | || ||| ||||| ||| |
Sbjct 1271 CTGCCTTCAAGTTCTTAGCATTCAATGCCGGCCCAAGAA-TATG-CCTCGGTAAACAAAT 1328
Query 1555 AGCTATGACTCTAATGAAGACCGTAGTTGTGGAGATATTACAAAACTATGATATTGATGT 1614
|||||||| || |||||||| || | ||||||||||||||||||||||| ||| | ||
Sbjct 1329 AGCTATGATTCAAATGAAGATTGTGGCCGTGGAGATATTACAAAACTATGACATTAAGGT 1388
Query 1615 TATCAAAGGACAGAAGATTGAGCCAGA-ACCTGGTCTTA-TG-TT-GCACATGAAGCATG 1670
| |||||| |||||| |||| ||||| || | || ||| | || | | ||||||||||
Sbjct 1389 TGCCAAAGGGCAGAAGTTTGAACCAGATAC-TAGT-TTAATTCTTAG-A-ATGAAGCATG 1444
Query 1671 GGCTTAGAG-TCACAATTA-CTAAGAGATGTTCA 1702
|| ||| || | || |||| | ||||||||||||
Sbjct 1445 GGTTTA-AGGTTACGATTAAC-AAGAGATGTTCA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69476606880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5