BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39540.3
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490732 jgi|Araly1|490732|fgenesh2_kg.7__165__AT4G39540.2 1467 0.0
> Ahg490732 jgi|Araly1|490732|fgenesh2_kg.7__165__AT4G39540.2
Length=1079
Score = 1467 bits (794), Expect = 0.0
Identities = 999/1092 (91%), Gaps = 38/1092 (3%)
Strand=Plus/Plus
Query 52 gagagaAA--GAGTCTCTGCCTCTCAAGCTCCGCCGTCGGGGAAAAA-AGAATATGGAAG 108
|||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1 GAGAGAAAGGGAGTCTCTGCCTCTCAAGCTCCGCCGTC-GGGAAAAAGAGAATATGGAAG 59
Query 109 CAGCTACTGTTCAGAGGTTTCAGTACTCATCATGGAATGATTTGAGAAATTTTGAAGGGA 168
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 60 CAGCTACTATTCAGAGGTTTCAGTACTCATCATGGACTGATTTGAGAACTTTTGAAGGGA 119
Query 169 AGCCTCGTGGTTCTCTGAGGTATAATACACAGCGAATTAAGGAAGATAAAAGGTTTAGAG 228
||||| ||||| | ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCCTAATGGTTATTTGAGG--T-ATACACAGCGAATTAAGGAAGATAAAAGGTTTAGAG 176
Query 229 TTGTTGCTTTAACTCTTGACAAAAGAAGGGATCATCGACTTAGATCAGTTTCTGATAAGA 288
||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 177 TTGTTGCTTTAGCTCTTGACAAAAGAAGGGATCATCGACAAAGATCAGTTTCTGAAAAGA 236
Query 289 ACTCCTCAGCATTGTTGGAAACTGGAAGTCTTCTTCATTCTCCATTTGATGAAGAACAAC 348
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACTCCTCAGCATTGTTGGATACTGGAAGTCTTCTTCATTCTCCATTTGATGAAGAACAAC 296
Query 349 AGATTTTGAAGAAAAAAGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATC 408
|| ||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 297 AGCTTTTGCAGAAAAAAGCTGAAGAGGTGAAACCATATTTAAATGGACGATCTATGTA-- 354
Query 409 TTTTGAACAGTTTCCTCGTGAATGCGTTAGGTATGATGGGTTCCGGGAAAACGACTGTAG 468
| | | | || || | | ||||||||||||||||| ||||| ||||
Sbjct 355 ---T---C----T--T-GT---TG-G--A---ATGATGGGTTCCGGGAAGACGACAGTAG 392
Query 469 GGAAGATTATGGCAAGATCGCTTGGTTATACATTCTTTGATTGTGACACTTTGATCGAGC 528
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GGAAGATAATGGCAAGATCACTTGGTTATACATTCTTTGATTGTGACACTTTGATCGAGC 452
Query 529 AGGCTATGAAGGGAACTTCTGTAGCTGAGATATTTGAGCATTTCGGTGAGAGTGTCTTCA 588
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 453 AGGCTATGAATGGAACTTCTGTAGCTGAGATATTTGAGCATTTCGGCGAGAGTGTCTTCA 512
Query 589 GAGAAAAAGAGACTGAAGCGTTAAAGAAACTCTCTTTGATGTACCACCAAGTTGTTGTTT 648
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 513 GAGAAAAAGAGACCGAAGCTTTAAAGAAACTCTCTTTGATGTACAACCAAGTTGTTGTTT 572
Query 649 CAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTGGAAGTACATGCATAAAGGTATTA 708
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 573 CAACCGGGGGAGGGGCAGTTATACGACCCATCAATTGGAAGTACATGCATAAAGGTATCA 632
Query 709 GTATTTGGCTTGATGTACCTCTAGAAGCCTTAGCGCATAGAATAGCTGCTGTAGGAACTG 768
| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 633 GCATTTGGCTTGATGTACCTCTAGAAGCGTTGGCGCATAGAATCGCTGCTGTAGGAACTG 692
Query 769 GTTCAAGACCATTGCTACATGATGATGAGTCAGGGGACACATACACAGCGGCTTTAAACC 828
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GTTCAAGACCATTGTTACAAGATGATGAGTCAGGGGACACATACACAGCGGCTTTAAACC 752
Query 829 GTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACTAAAGCCAGCGCAAGAGTTT 888
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 753 GTCTTTCAATGATTTGGGATGCACGTGGTGAAGCATACACTAACGCCAGCGCAAGAGTTT 812
Query 889 CCTTGGAGAATATTACTTTGAAGCTCGGTTATAGAAGTGTCTCAGATCTTACACCAGCTG 948
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||
Sbjct 813 CCTTGGAGAATATTACATTAAAGCTTGGTTATAGAAGTGTCTCAGATCTTACACCAACTG 872
Query 949 AAATCGCCATTGAGGCCTTTGAGCAAGTTCAGAGCTATTTAGAGAAAGAAGATGGTATGG 1008
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 873 AAATCGCCATTGAGGCCTTTGAGCAAGTTCGGAGCTATTTAGAGAAAGAAGACGGTATGG 932
Query 1009 CTAGACCAGATGGACT-CTAGTTCCAGAAAGTTATGTTTCCCCGCAACATCTCATGAATT 1067
| ||||||||||| || |||||||||||| | ||||||||| |||||||||||||||||
Sbjct 933 CCAGACCAGATGG-CTTCTAGTTCCAGAATGATATGTTTCCGTGCAACATCTCATGAATT 991
Query 1068 TGTGCCTAGTTTTGAATGTTGTATATA-A-ATGAATAATACTCTGTTTGAGCACATTGTC 1125
| || | |||||| | |||| |||| | |||||||||||||||||| | |||||||||
Sbjct 992 TACGCGT--TTTTGAGTATTGTGTATAGAGATGAATAATACTCTGTTTCATCACATTGTC 1049
Query 1126 TTCTTTTC-AAA 1136
|||||||| |||
Sbjct 1050 TTCTTTTCGAAA 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5