BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39540.3 Length=1192 Score E Sequences producing significant alignments: (Bits) Value Ahg490732 jgi|Araly1|490732|fgenesh2_kg.7__165__AT4G39540.2 1467 0.0 > Ahg490732 jgi|Araly1|490732|fgenesh2_kg.7__165__AT4G39540.2 Length=1079 Score = 1467 bits (794), Expect = 0.0 Identities = 999/1092 (91%), Gaps = 38/1092 (3%) Strand=Plus/Plus Query 52 gagagaAA--GAGTCTCTGCCTCTCAAGCTCCGCCGTCGGGGAAAAA-AGAATATGGAAG 108 |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1 GAGAGAAAGGGAGTCTCTGCCTCTCAAGCTCCGCCGTC-GGGAAAAAGAGAATATGGAAG 59 Query 109 CAGCTACTGTTCAGAGGTTTCAGTACTCATCATGGAATGATTTGAGAAATTTTGAAGGGA 168 |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 60 CAGCTACTATTCAGAGGTTTCAGTACTCATCATGGACTGATTTGAGAACTTTTGAAGGGA 119 Query 169 AGCCTCGTGGTTCTCTGAGGTATAATACACAGCGAATTAAGGAAGATAAAAGGTTTAGAG 228 ||||| ||||| | ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 120 AGCCTAATGGTTATTTGAGG--T-ATACACAGCGAATTAAGGAAGATAAAAGGTTTAGAG 176 Query 229 TTGTTGCTTTAACTCTTGACAAAAGAAGGGATCATCGACTTAGATCAGTTTCTGATAAGA 288 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 177 TTGTTGCTTTAGCTCTTGACAAAAGAAGGGATCATCGACAAAGATCAGTTTCTGAAAAGA 236 Query 289 ACTCCTCAGCATTGTTGGAAACTGGAAGTCTTCTTCATTCTCCATTTGATGAAGAACAAC 348 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 237 ACTCCTCAGCATTGTTGGATACTGGAAGTCTTCTTCATTCTCCATTTGATGAAGAACAAC 296 Query 349 AGATTTTGAAGAAAAAAGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATC 408 || ||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||| Sbjct 297 AGCTTTTGCAGAAAAAAGCTGAAGAGGTGAAACCATATTTAAATGGACGATCTATGTA-- 354 Query 409 TTTTGAACAGTTTCCTCGTGAATGCGTTAGGTATGATGGGTTCCGGGAAAACGACTGTAG 468 | | | | || || | | ||||||||||||||||| ||||| |||| Sbjct 355 ---T---C----T--T-GT---TG-G--A---ATGATGGGTTCCGGGAAGACGACAGTAG 392 Query 469 GGAAGATTATGGCAAGATCGCTTGGTTATACATTCTTTGATTGTGACACTTTGATCGAGC 528 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 393 GGAAGATAATGGCAAGATCACTTGGTTATACATTCTTTGATTGTGACACTTTGATCGAGC 452 Query 529 AGGCTATGAAGGGAACTTCTGTAGCTGAGATATTTGAGCATTTCGGTGAGAGTGTCTTCA 588 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 453 AGGCTATGAATGGAACTTCTGTAGCTGAGATATTTGAGCATTTCGGCGAGAGTGTCTTCA 512 Query 589 GAGAAAAAGAGACTGAAGCGTTAAAGAAACTCTCTTTGATGTACCACCAAGTTGTTGTTT 648 ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 513 GAGAAAAAGAGACCGAAGCTTTAAAGAAACTCTCTTTGATGTACAACCAAGTTGTTGTTT 572 Query 649 CAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTGGAAGTACATGCATAAAGGTATTA 708 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 573 CAACCGGGGGAGGGGCAGTTATACGACCCATCAATTGGAAGTACATGCATAAAGGTATCA 632 Query 709 GTATTTGGCTTGATGTACCTCTAGAAGCCTTAGCGCATAGAATAGCTGCTGTAGGAACTG 768 | |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| Sbjct 633 GCATTTGGCTTGATGTACCTCTAGAAGCGTTGGCGCATAGAATCGCTGCTGTAGGAACTG 692 Query 769 GTTCAAGACCATTGCTACATGATGATGAGTCAGGGGACACATACACAGCGGCTTTAAACC 828 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 693 GTTCAAGACCATTGTTACAAGATGATGAGTCAGGGGACACATACACAGCGGCTTTAAACC 752 Query 829 GTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACTAAAGCCAGCGCAAGAGTTT 888 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 753 GTCTTTCAATGATTTGGGATGCACGTGGTGAAGCATACACTAACGCCAGCGCAAGAGTTT 812 Query 889 CCTTGGAGAATATTACTTTGAAGCTCGGTTATAGAAGTGTCTCAGATCTTACACCAGCTG 948 |||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||| Sbjct 813 CCTTGGAGAATATTACATTAAAGCTTGGTTATAGAAGTGTCTCAGATCTTACACCAACTG 872 Query 949 AAATCGCCATTGAGGCCTTTGAGCAAGTTCAGAGCTATTTAGAGAAAGAAGATGGTATGG 1008 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 873 AAATCGCCATTGAGGCCTTTGAGCAAGTTCGGAGCTATTTAGAGAAAGAAGACGGTATGG 932 Query 1009 CTAGACCAGATGGACT-CTAGTTCCAGAAAGTTATGTTTCCCCGCAACATCTCATGAATT 1067 | ||||||||||| || |||||||||||| | ||||||||| ||||||||||||||||| Sbjct 933 CCAGACCAGATGG-CTTCTAGTTCCAGAATGATATGTTTCCGTGCAACATCTCATGAATT 991 Query 1068 TGTGCCTAGTTTTGAATGTTGTATATA-A-ATGAATAATACTCTGTTTGAGCACATTGTC 1125 | || | |||||| | |||| |||| | |||||||||||||||||| | ||||||||| Sbjct 992 TACGCGT--TTTTGAGTATTGTGTATAGAGATGAATAATACTCTGTTTCATCACATTGTC 1049 Query 1126 TTCTTTTC-AAA 1136 |||||||| ||| Sbjct 1050 TTCTTTTCGAAA 1061 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44489444139 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5