BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39550.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490734 jgi|Araly1|490734|fgenesh2_kg.7__167__AT4G39550.1 1688 0.0
Ahg338371 jgi|Araly1|338371|fgenesh1_pg.C_scaffold_2000470 296 3e-79
Ahg331398 jgi|Araly1|331398|fgenesh1_pm.C_scaffold_8000741 183 2e-45
Ahg336810 jgi|Araly1|336810|fgenesh1_pg.C_scaffold_1003375 147 3e-34
Ahg352250 jgi|Araly1|352250|fgenesh1_pg.C_scaffold_6002843 115 8e-25
Ahg333017 jgi|Araly1|333017|fgenesh1_pm.C_scaffold_9000045 89.8 5e-17
> Ahg490734 jgi|Araly1|490734|fgenesh2_kg.7__167__AT4G39550.1
Length=1286
Score = 1688 bits (914), Expect = 0.0
Identities = 1190/1316 (90%), Gaps = 48/1316 (4%)
Strand=Plus/Plus
Query 1 GCTGTCGGAAAAGAATACAGAGGTTGATCGACGCCTATACTCGCCAATGTCGTCCCC-G- 58
|||||||||||||||| ||||||||| | || | ||| ||||||||||||||||| |
Sbjct 1 GCTGTCGGAAAAGAATCCAGAGGTTG-TTGA--TCAATA-TCGCCAATGTCGTCCCCAGA 56
Query 59 G-A-AA-A-G-A-A-GAGGAAGACGACGAAGAAGCCATCGCCGACGCCGCAATCGACAAC 111
| | || | | | | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 57 GAAGAAGAGGAAGAGGAGGAAGACGACGAAGAAGCCATCGCCGACGCCGCAATCGACGAC 116
Query 112 CCCAAATCCTTCACTTCCAGATGATTTAGTAGTGAGCTGCTTAGCACGCGTCTCGAGATT 171
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 117 CCCAAATCCTTCACTTCCCGATGATTTGGTATTGAGCTGCTTAGCACGCGTCTCGAGATT 176
Query 172 GTATTACCCAACTCTCTCCTTAGTCTCCAAGAGCTTCCGCTC-CTTGATTGCTTCACCAG 230
| | ||||||||||||||| | ||||||||||| |||||||| || | |||||||||| |
Sbjct 177 GGACTACCCAACTCTCTCCCTCGTCTCCAAGAGTTTCCGCTCGCTCG-TTGCTTCACCGG 235
Query 231 ATCTCTACAAGACCCGAT-CTCTGTTAGGTCGCACTGAGAGTTGTCTCTATGTGTGTTTA 289
| || ||||||| ||| | |||| ||||| ||||| |||||||||||||||||||||||
Sbjct 236 AGCTTTACAAGATCCGGTCCTCT-TTAGGCCGCACCGAGAGTTGTCTCTATGTGTGTTTG 294
Query 290 CAGGAGAAAGATTCTGACCCTAACCCTCGTTGGTTCACTCTCTGTCTGAAACCTAATCGA 349
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 295 CAGGAGAAAGATTCTGACCCTAACCCTCGTTGGTTCACTCTCTGCCGGAAACCTAATCGA 354
Query 350 ACTCTAACCAATGATATCACTGagaagaagaagaagaagaagaagaagaagaagaTGTCA 409
|||||||||||||| |||||| | |||||||| || ||||||| | | ||||
Sbjct 355 ACTCTAACCAATGACATCACT--------G-AGAAGAAG-AG--GAAGAAG-A-A-GTCA 399
Query 410 AGTGGGTATG-TTCTGGCTGCAATCCCAGTTCTCCATTCTCGTCCTGCGTACTGGTCGGG 468
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 400 AGTGGGTATGCTT-TGGCTGCAATCCCAGTTCTCCATTCTCGTCCTGCGCACTGGTCTGG 458
Query 469 TCTCGTTGCCGTTGGTTCTAATATCTACAACATTGGAGGACCCATCGACAAAGCACACTC 528
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct 459 TCTCGTTGCCGTTGGTTCTAATATCTACAACATTGGCGGACCCACCGACAAAGAACACTC 518
Query 529 GTCTATCGTCTCGGTCCTGGACTGTCAGTCTCACACATGGCACGAGGGTCCAGGCATGAG 588
||||||||||||| |||||||||| ||||||||||| ||| ||||| |||| |||||||
Sbjct 519 GTCTATCGTCTCGATCCTGGACTGCCAGTCTCACACGTGGGGCGAGGCTCCAAGCATGAG 578
Query 589 AGTAGAGCGGAGATATCCGGCGGCTAATGTTGTTGAAGGAAAGATATATGTAACAGGAGG 648
|||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 579 AGTAGAGCGGAGGTATCCGGCGGCCAATGTTCTTGATGGAAAGATATATGTAACAGGAGG 638
Query 649 CTGCAAAGACTGCAGCAATTCCTCCAACTGGATGGAGGTTTTCGATCCTAGAACCCAAAC 708
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 639 CTGCAAAGACTGCAGCAATCCCTCCAACTGGATGGAGGTTTTCGATCCTAAAACCCAAAC 698
Query 709 TTGGGAGTCTGTCTCGAGCCCTGGCGCAGAGATTGGAGGTTGTAGCATACATAAAAGCGC 768
||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 699 TTGGGAGCCTGTCTCCAGCCCTGGCGCGGAGATTGGTGGTTGTAGCATACATAAAAGCGC 758
Query 769 AGTGGTGGAAGGAGAAATCTTGATTGCAAACTCTCATGGTTTGATTTACAAACCCAAGGA 828
|||||| |||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 759 AGTGGTTGAAGGAGAAATCTTCTTTGCAAACTCTAAAGGTTTGATTTACAAACCCAAGGA 818
Query 829 AGGTAGGTGGGAAAGGATGAAATGGGACATGGATATAGGTTGGGTATGGTATTCTTATTG 888
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AGGTAGATGGAAAAGGATGGAATGGGACATGGATATAGGTTGGGTATGGTATTCTTATTG 878
Query 889 CGTTGTTGAGAACGTGCTTTACTATTACTATAAGGGAGTCTTCAAATGGTATGACACTAT 948
|||||||||| | |||||||||||||| || ||||||| |||||||||||||||||||
Sbjct 879 CGTTGTTGAGGATGTGCTTTACTATTATTACAAGGGAGAGTTCAAATGGTATGACACTAC 938
Query 949 GGCAAGACTCTGGAGGGATCTCAAGGGTGTGAAAGGACTCCCCAGGTTTGCCAGATGTGG 1008
|||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||
Sbjct 939 GGCAAGACTCTGGAGGAATTTGAAGGGTGTGAAAGGACTGCCCAGGTTTGCCAGATGTGG 998
Query 1009 TGGAAAAATGGCGGATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAGATTGTGACTTC 1068
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TGGAAAGATGGTGGATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAGATTGTGACTTC 1058
Query 1069 CGATGATGGATGTAAGAACAAGATGATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAA 1128
||||| | |||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1059 CGATG--G-ATGTAAGAACAAGATGATCTTGTGTGCGGTGATTGCTCTTGAAAGGCGCAA 1115
Query 1129 CAGCGAAGAGATTTGGGGGAAGGTCGAGTGGCATGACGCAGTTCTTACAGTTCCC-TTGT 1187
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |
Sbjct 1116 CAGCGAAGAGATTTGGGGAAAGGTCGAGTGGCATGACGCAGTTCTTACCGTTCCCATT-T 1174
Query 1188 CATATGAAGTCGTGTATGCTCTTTCCCCTACCGTTTGATGAGACAAGAC--G--TGAATG 1243
||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1175 CATATGACGTCGTGTATGCTCTTTCCCCTACCGTTTGATGAGACA-GACTTGAATGAATG 1233
Query 1244 TGGTGAATCTTTGTT-TCTTGCGTGTATCGTATCATTTTGTTGGATGCTTGTGTCT 1298
|||||||||||| || | ||| ||||| |||||||||||||||||| || |||||
Sbjct 1234 TGGTGAATCTTTATTGT-TTG--TGTATTGTATCATTTTGTTGGATGGTTTTGTCT 1286
> Ahg338371 jgi|Araly1|338371|fgenesh1_pg.C_scaffold_2000470
Length=1086
Score = 296 bits (160), Expect = 3e-79
Identities = 486/634 (77%), Gaps = 60/634 (9%)
Strand=Plus/Plus
Query 116 AATCCTTCACTTCCAGATGATTTAG-TAGTGAGCT-GCTTAGCACGCGTCTCGAGATTGT 173
|||| |||||||||||| ||||| | ||||||| | |||||| || |||||||||||||
Sbjct 61 AATCTTTCACTTCCAGAAGATTT-GATAGTGAG-TATCTTAGCCCGTGTCTCGAGATTGT 118
Query 174 ATTACCCAACTCTCTCCTTAGTCTCCAAGAGCTTCCGCTC-CTTGATTGCTTCACCAGAT 232
|||| |||||||||||||||||||||||| |||||||||| | | || ||||||| ||
Sbjct 119 ATTATCCAACTCTCTCCTTAGTCTCCAAGCGCTTCCGCTCGC-TCCTTACTTCACCGGAG 177
Query 233 CTCTA-CAAGACCCGATCTCTGTTAGGTCGCA-CTGAGAGTTGTCTCTATGTGTGTTTAC 290
|| || ||| ||||| || || |||||||| | | || | || ||||||||| || ||||
Sbjct 178 CTTTACCAA-ACCCGGTCACTATTAGGTCGTAGC-GATAATTTTCTCTATGTATGCTTAC 235
Query 291 -AGGAGAAAGATTCTGACCCTAA-CCCTCGTTGGTTCACT-CTCTGTCTGAAACCTAATC 347
| | | |||| || || |||||| ||||||| | || |||| || ||| ||||
Sbjct 236 GATTCTCTCG-TACTGA-CCGAATCCCTCGCTGGTTCA-TGCTGTGTCGGAGACCAAATC 292
Query 348 GAACT-CTAACCAATGATATCACTGagaagaagaagaagaagaagaagaagaagaagaTG 406
|| | ||||||| || | |||| |||||||||||||||||| | | |
Sbjct 293 -AAATCCTAACCAGTG--A-CACT------------AAGAAGAAGAAGAAGAAG-A-A-G 333
Query 407 TCAAGTGGGTATGTTCTGGCTGCAATCCCAGTTCTCCATTCTCGTCCTGCGTACTGG-TC 465
||||| ||||||||| |||| |||||||| ||| |||||||| ||||||| || || ||
Sbjct 334 TCAAGCGGGTATGTTTTGGCAACAATCCCAATTCACCATTCTCCTCCTGCGCAC-GGTTC 392
Query 466 GGGTCTCGTTGCCGTTGGTTCTAATATCTACAACATTGGAGGACCCATCGACAAAGCACA 525
|||||||| || |||||||||||||||||||||||||||||| ||||| || | | |
Sbjct 393 AGGTCTCGTGGCGGTTGGTTCTAATATCTACAACATTGGAGGATCCATCTACGATTCGCC 452
Query 526 CTCGTCTA-TCGTCT-CGGTCCTGGACTGTCAG-TCTCACACATGGCACGAGGGTCCAGG 582
||| || | | | || | |||| || || | | ||||||||||||| | | | |||| |
Sbjct 453 CTCATCAAAT-G-CTTCAATCCTAGATTG-CTGGTCTCACACATGGCTCAAAGCTCCAAG 509
Query 583 CATG-AGAGTAGAGCGGAGAT-ATCCGGCGGCTAATGTTG-TTGAAGGAAAGATATATGT 639
|||| | || |||||| ||| | || | || ||| || |||| | ||||||||| ||
Sbjct 510 CATGCAT-GTGGAGCGG-GATTACCCATCAGCCAAT-TTCCTTGATGAAAAGATATACGT 566
Query 640 AACAGGAGGCTGC-A-AAG-ACTGCAGCAATTCC-TCCAACTGGATGGAGGTTTTCGATC 695
|||||||||||| | || ||| | |||| || || ||||||||||||||||||||||
Sbjct 567 AACAGGAGGCTGTTATAAACACT--A-CAAT-CCATCAAACTGGATGGAGGTTTTCGATC 622
Query 696 CTAGAACCCAAA-CTTGGGAGTCTGTCTCGAGCC 728
|| || | ||| |||||||| |||| | |||||
Sbjct 623 -TAAAAACAAAAACTTGGGAGCCTGTGTTGAGCC 655
> Ahg331398 jgi|Araly1|331398|fgenesh1_pm.C_scaffold_8000741
Length=1041
Score = 183 bits (99), Expect = 2e-45
Identities = 318/420 (76%), Gaps = 29/420 (7%)
Strand=Plus/Plus
Query 804 ATGGTTTGATTTACAAACCCAAGGAAGGTA-GGTGGGAAAGGATGAAAT-GGGACATGGA 861
|||||||| ||||| |||||||||||| | ||||||| ||| || ||| || ||
Sbjct 623 ATGGTTTGGCTTACATACCCAAGGAAGG-ACAATGGGAAA-GAT--TATGGGGTCA--GA 676
Query 862 TATAG-GTTGGGTATGGTATTCTTATTGCGTTG-TTGAGAACGTGCTT-TACTATTACTA 918
|| | |||||| ||||| ||||| ||||| || |||| || || || ||| |||||
Sbjct 677 AATCGAGTTGGGGATGGTTTTCTTTTTGCG-TGATTGAAAATGT-ATTGTACCATTACCG 734
Query 919 TAAGGGAGTCTTCAAATGGTATGACACTATGGCAAGACT-CTGGAGGGATCTCAAGGGTG 977
| ||||| ||||||||| ||||| | | || | || | |||| || | ||||||
Sbjct 735 TTCTGGAGTGTTCAAATGGCATGACTCCAAGGGAGGA-TGTTGGATAGAGATGAAGGGTT 793
Query 978 TGAAAGGACTCCCCAGGTTTGCCAG--AT-GTGGTGGAAAAATGGCGGATTATGGTGGAA 1034
||| |||| | || | ||||| || || || ||| | ||||||||||||||||||
Sbjct 794 TGACAGGATTGCCTAAGTTTGAAAGTTATGGTTGTGTTCAGTTGGCGGATTATGGTGGAA 853
Query 1035 AGATGGCGGTTTTCTGGGAC-AAGATTGTGACTT-CCGATGATGGATGTAAGAACAAGAT 1092
||||||||||||| | || | || ||||| ||| || | |||| ||||||||||||||
Sbjct 854 AGATGGCGGTTTTAT-GGTCTGAGCTTGTG-CTTACC-A--ATGGCTGTAAGAACAAGAT 908
Query 1093 GATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAACAGCGAAGAGATTTGGGGGAAGGT 1152
||||| |||||| || ||||||||||| ||||| || | ||||||||||||||||||||
Sbjct 909 GATTTGGTGTGCGGTAATTGCGCTTGAGAGGCGTAATGGTGAAGAGATTTGGGGGAAGGT 968
Query 1153 CGAGTGGCATGACGCAGTT-CTTACAGTTCCCT-TGTCATATGAAGTCGTGTATGCTCTT 1210
||||||| ||||| || | || || || ||| | |||| | || | | ||||||||||
Sbjct 969 CGAGTGGTGTGACG-AGGTGCTAACGGTCCCCAAT-TCATCTAAATTGGAGTATGCTCTT 1026
> Ahg336810 jgi|Araly1|336810|fgenesh1_pg.C_scaffold_1003375
Length=1041
Score = 147 bits (79), Expect = 3e-34
Identities = 143/172 (83%), Gaps = 11/172 (6%)
Strand=Plus/Plus
Query 1013 AAAATGGCGGATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAGATTGTGACTTCCGAT 1072
||| ||||||||||||||||||||||||||||||| ||||||||| | ||| | | |
Sbjct 838 AAACTGGCGGATTATGGTGGAAAGATGGCGGTTTTTTGGGACAAG-TA-TGAG--C-G-T 891
Query 1073 GATGGATGTAAGAACAAGATGATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAACAGC 1132
| | || ||| ||||||||||| ||||||| |||||||||| ||||| | ||||| |
Sbjct 892 AAAAG-TG-AAGG-CAAGATGATTTGGTGTGCTATGATTGCGCTCGAAAGACACAACA-C 947
Query 1133 -GAAGAGATTTGGGGGAAGGTCGAGTGGCATGACGCAGTTCTTACAGTTCCC 1183
||||| ||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 948 TGAAGATATTTGGGGGAATGTCGAGTGGTGTGACGCAGTGCTTACAGTTCCC 999
> Ahg352250 jgi|Araly1|352250|fgenesh1_pg.C_scaffold_6002843
Length=771
Score = 115 bits (62), Expect = 8e-25
Identities = 114/139 (82%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 1023 ATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAGATTGTGACTTCCGAT-GATGGATGT 1081
||||||| |||||||| |||||||| ||||| |||| ||| | | | || | || | |
Sbjct 569 ATTATGGCGGAAAGATTGCGGTTTTGTGGGAAAAGAAAGTG-CGTGCTATCGGCGGCTCT 627
Query 1082 AAGAACAAGATGATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAACAG-CGAAGAGAT 1140
|| || |||||||||| |||||||||||||||||||||||||||||||| | |||||||
Sbjct 628 AACAAGAAGATGATTTGGTGTGCTGTGATTGCGCTTGAAAGGCGCAACACAC-AAGAGAT 686
Query 1141 TTGGGGGAAGGTCGAGTGG 1159
|| |||||| | ||||||
Sbjct 687 TTATGGGAAGATTGAGTGG 705
> Ahg333017 jgi|Araly1|333017|fgenesh1_pm.C_scaffold_9000045
Length=1077
Score = 89.8 bits (48), Expect = 5e-17
Identities = 116/147 (79%), Gaps = 11/147 (7%)
Strand=Plus/Plus
Query 1017 TGGCGGATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAG-AT--T-GTGACTTCCGAT 1072
||||||||||||||||||||||||||||||| ||| ||||| || | || || | ||
Sbjct 872 TGGCGGATTATGGTGGAAAGATGGCGGTTTTATGGCACAAGCATGATCGTT-CTAGCAAT 930
Query 1073 GATGGATGTAAGAACAAGATGATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAACAGC 1132
||| | | ||| | | || | |||||| | |||||||||||||||||| | ||
Sbjct 931 GATA-AGGGAAGG----GTT-ATATGGTGTGCAGAGATTGCGCTTGAAAGGCGTAGTAGT 984
Query 1133 GAAGAGATTTGGGGGAAGGTCGAGTGG 1159
||||| |||||||||||||||||||||
Sbjct 985 GAAGAAATTTGGGGGAAGGTCGAGTGG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5