BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39560.1
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327908 jgi|Araly1|327908|fgenesh1_pm.C_scaffold_7000135 643 0.0
Ahg357131 jgi|Araly1|357131|fgenesh1_pg.C_scaffold_8000918 196 3e-49
Ahg937812 jgi|Araly1|937812|scaffold_502003.1 150 2e-35
Ahg490737 jgi|Araly1|490737|fgenesh2_kg.7__170__AT4G39570.1 111 1e-23
> Ahg327908 jgi|Araly1|327908|fgenesh1_pm.C_scaffold_7000135
Length=1131
Score = 643 bits (348), Expect = 0.0
Identities = 442/487 (91%), Gaps = 8/487 (2%)
Strand=Plus/Plus
Query 366 TAAGCCAAGTGGGCATGTTATGGCGGCAATCTCAATCCCCAATTCTCGTCCTGTACATTG 425
||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |
Sbjct 342 TAAGCCAAGTGGGCATGTTATGGCGGCAATCCCAATGCCCAATTCTCCTCCTGTACACCG 401
Query 426 CTCTGGTCTCGTTGCTGTTGGTTCTGATATATACAACATTGGC-GGATCCATCATCAATG 484
||||||||| ||| | |||||||||||||| |||||||||||| || |||||||||||||
Sbjct 402 CTCTGGTCTGGTTACGGTTGGTTCTGATATTTACAACATTGGCTGG-TCCATCATCAATG 460
Query 485 AACACTCCTCTAGTGTCTCGATATTGGACTGCCGGTATCACACGTGGCGTGATGCTCCAA 544
| ||||||||||| |||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct 461 ACCACTCCTCTAGCGTCTCGATTTTGGACTGTCGGTCTCACACGTGGCGCGAAGCTCCAA 520
Query 545 ACATGCTGGTGGAGCGG-AATTCACATGCAGCCAATGTTATTGATGGGAAGATATATGTT 603
||||||||||||||||| ||| | |||||||||||| |||||||| ||||||||||||
Sbjct 521 ACATGCTGGTGGAGCGGTTTTTC-CCTGCAGCCAATGTCATTGATGGAAAGATATATGTT 579
Query 604 GCAGGAGGCAGCAGAGACTCCAATTCCTCCAATTGGATGGAAGTTTTCGATATAAAAACC 663
||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 580 GCAGGAGGCAGCAAAGACTCTAATTCCTCCAATTGGATGGAAGTTTTCGATCTAAAAACC 639
Query 664 CAAACTTGGGAGCCTGTGCTAAACCCT-ATCGCAGATGGATGTGACAGACGTATACGCAA 722
||||||||||| | |||| |||||||| || ||||||||||| || || |||||| ||||
Sbjct 640 CAAACTTGGGAACTTGTGTTAAACCCTAAT-GCAGATGGATGCGAAAGTCGTATATGCAA 698
Query 723 GAGCGCAGTGATTGAAGAAGCTATCTGCTTGTTTGGGTATAAGGGTGTGGGTGTTGCTTA 782
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GAGCGCAGTGATTGACGAAGCTATCTGCTTGTTTGGGTATAAGGGTGTGGGTGTTGCTTA 758
Query 783 CAACCCAAGAATAGATAAATGGGAA-GCGATAGGAGAAGTGAATTATTTGGATTTAGGAT 841
||||||| ||||| ||||||||||| | |||||||| ||||||||||||| |||||||||
Sbjct 759 CAACCCAGGAATAAATAAATGGGAAAG-GATAGGAGCAGTGAATTATTTGAATTTAGGAT 817
Query 842 GGGTATG 848
||| |||
Sbjct 818 GGGAATG 824
Score = 448 bits (242), Expect = 8e-125
Identities = 284/305 (93%), Gaps = 0/305 (0%)
Strand=Plus/Plus
Query 64 ATGTCATCGCCGGTGAAGAAGATGAAGAAGAAGACGACGACGTCGCCGATACTCTCACCG 123
||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTCGCCGGTGAAGAAAAGGGAGAAGAAGACGACGACGTCGCCGATACTCTCACCG 60
Query 124 ACGCCGCATTCGACCCAGATTTTATCACTTCCTGTTGATTTGCTAATAAGTATCCTCGCC 183
|||||||| |||| |||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 61 ACGCCGCAATCGATGCAGATTCCATCACTTCCCGTTGATTTGCTAATAAGTATCATCGCC 120
Query 184 CGCGTCTCGAGATTGGACTACCCAATTCTCTCTCTCGTCTCCAAGAGCTTTCGATCTCTC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCGTCTCGAGATTGGACTACCCAATTCTCTCTCTCGTCTCCAAGAGCTTTCGATCTCTC 180
Query 244 ATTGCTTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGGCCGCACAGAGAGCTGTCTC 303
|||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 181 CTTGCATCACCGGAGCTTTACGAGACTCGGTCACTCTTAGGACGTACCGAGAGCTGTCTC 240
Query 304 TATCTGTGCTTAGGGATCCCTTCTGACTTTAACCCTCGCTGGTTCACTCTCTGCCGAAAA 363
||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 241 TATCTGTGCTTAGGGTTTACTTCTAACTCTAACCCTCGCTGGTTCACTCTCTGCCGAAAA 300
Query 364 CCTAA 368
|||||
Sbjct 301 CCTAA 305
Score = 407 bits (220), Expect = 1e-112
Identities = 275/302 (91%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 896 AGACGGAATCAAATTGTATGACTCTAAGATAGGATGCTGGATGAAGCTCAAGGGTTTGGA 955
|||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 831 AGACGGAATCAAATTGTATGACTCTAAGATAGGACACTGGATGAAGCTGAAGGGATTGGA 890
Query 956 AGGATTGCCTGAGTTTGCTAGTTATTCTTATGTTAGATTAGCGGATTATGGTGGGAAGAT 1015
|||||||||| ||||||||||| ||| || |||||||||||||||||||||||| || ||
Sbjct 891 AGGATTGCCTAAGTTTGCTAGTGATTGTTGTGTTAGATTAGCGGATTATGGTGGAAAAAT 950
Query 1016 GGCGGTTTTGTGGGACAAGTTACCTACTACTGGCAATAATAACATGGTGATTTGGTGTGC 1075
||| |||||||||| ||| ||||||||||||||| |||| |||| |||||||||||||||
Sbjct 951 GGCTGTTTTGTGGGGCAATTTACCTACTACTGGCGATAAGAACAAGGTGATTTGGTGTGC 1010
Query 1076 GGTAATCACACTTGAAAAGCGCC-ACAATGAAAACATTTGGGGGAGGGTTGAGTGGTTTG 1134
|||||||||||||||||||| | |||||||||| |||||||| | |||||||||| |||
Sbjct 1011 GGTAATCACACTTGAAAAGC-CTGACAATGAAAAGATTTGGGGCAAGGTTGAGTGGCTTG 1069
Query 1135 ATGCTGTGCTTACAGTCCCTGAGCCTTATGAATTCGTGTGTGCTCGTTCCGCTAATGTTT 1194
||||||||||||||||||||||| |||||||||||||||||||| || |||||| |||||
Sbjct 1070 ATGCTGTGCTTACAGTCCCTGAGTCTTATGAATTCGTGTGTGCTTGTGCCGCTACTGTTT 1129
Query 1195 GA 1196
||
Sbjct 1130 GA 1131
> Ahg357131 jgi|Araly1|357131|fgenesh1_pg.C_scaffold_8000918
Length=630
Score = 196 bits (106), Expect = 3e-49
Identities = 461/625 (74%), Gaps = 54/625 (9%)
Strand=Plus/Plus
Query 547 ATGCTGGTGGAGCGGA-ATTCACATGCAGCCAATGTTATTGATGGGAAGATATATGTTGC 605
|||||| ||||||||| || | || | || | |||| ||||||| ||||||||||| |
Sbjct 1 ATGCTGATGGAGCGGAGATACCCA-GTTGCTAGTGTTGTTGATGGAAAGATATATGTAGT 59
Query 606 AGGAGGC-AGCAGAGACTCCAATTCCTCCAATTGGATGGAAGTTTTCGATATAAAAACCC 664
||||||| | | ||||| ||||||| || |||||||||||||||||| ||||| |
Sbjct 60 AGGAGGCTTG-AAAGACTTTGATTCCTCTAAATGGATGGAAGTTTTCGATCCAAAAATTC 118
Query 665 AAACTTGGGAGCCTGTGCTAAACCCTATCGCAGA-T-GGATGTGACAGACGTATACGCAA 722
||||||||||| |||| | | ||| || | | | ||| | ||| |||| |
Sbjct 119 AAACTTGGGAGTTTGTGTTGAGCCC--TC-C-TACTCTCATG-AAGAGATTTATATTCTG 173
Query 723 GAGCGCAGTGATTGAAGAAGCTATCTGCTTGTTTGGGTATAAGGGTGTGGGTGTTGCTTA 782
|| ||||||||||||||||| |||| | |||||||| | || | ||| | |||||
Sbjct 174 GACCGCAGTGATTGAAGAAGAAATCTACATGTTTGGGGAGAA-----T-GGTATGGCTTA 227
Query 783 CAA-CC-CAAGAATAGATAAATGGGAAGCGATAGGAGAAGTGAATTATTTGGATTTAGGA 840
||| || ||| | ||||| || |||| || |||||| | | | | || |
Sbjct 228 CAAGCCTGAAG-A-AGATACAT-GGAA---AT--CTGAAGTG----A--T-G--TCAGTA 270
Query 841 TGGGTATGGCTTCTTGTTGCGTGATAGATAATGTGCTGTATTGTTACAGTAATATAGACG 900
||||| | |||| ||||||| ||||||| || || ||| |||| || || | ||||
Sbjct 271 GGGGTA--GATTCTCATTGCGTGGTAGATAACGTACTCTATCGTTATTGTGATTTTGACG 328
Query 901 GAATCAAATT-GTATGACTCTA-AGATAGGATGCTGGATGA-AGCTCAAGGGTTTGGAAG 957
| ||| |||| ||| ||||| | |||||||| ||||| || | | |||||||||||||
Sbjct 329 GGATC-AATTGGTACGACTC-AGAGATAGGACACTGGA-GAGAATTGAAGGGTTTGGAAG 385
Query 958 GATTGCCTGAGTTTGCTAGTTATTCTTATGTTAGATTAGC-GGATTATGGTGGGAAGATG 1016
||||||||||||||||||| ||| | ||||| ||| | |||||||||||| |||||
Sbjct 386 GATTGCCTGAGTTTGCTAGATATAGTAATGTTT-ATTTGGTGGATTATGGTGGAAAGATA 444
Query 1017 GCGGTTTTGTGGGACAAG--TTA-CCTACTACTGGCAATAATAACATGGTGATTTGGTGT 1073
|||||||| ||||||||| || ||| ||| ||| ||| | || || ||||||||||
Sbjct 445 GCGGTTTTTTGGGACAAGGATTTGCCTTCTAGTGGTTGTAAGAGCAGGGCGATTTGGTGT 504
Query 1074 GCGGTAATCACACTTGAAA-AGCGCCACAAT-GAAA--ACATTTGGGGGAGGGTTGAGTG 1129
||||| || | ||||||| | || | ||| | | |||||||| | |||||||||
Sbjct 505 GCGGTGATTTCCCTTGAAAGAT-GCAATAATAGTCGGGAGATTTGGGGAAAGGTTGAGTG 563
Query 1130 GTTTGATGCTGTGCTTACAGTCCCT 1154
| |||||| |||||||||||| |||
Sbjct 564 GCTTGATGTTGTGCTTACAGTTCCT 588
> Ahg937812 jgi|Araly1|937812|scaffold_502003.1
Length=1200
Score = 150 bits (81), Expect = 2e-35
Identities = 157/194 (81%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 124 ACGCCGCATTCGA-CCCAGATTTTATCACTTCCTGTTGATTTGCTAATAAG-TATCCTCG 181
|||| ||| |||| || | |||| |||||||| | ||||||| || | || | | | |
Sbjct 53 ACGCAGCAATCGATCCTA-ATTTCGTCACTTCCCGATGATTTGATATTGAGTTGT-GTGG 110
Query 182 CCCGCGTCTCGAGATTGGACTACCCAATTCTCTCTCTCGTCTCCAAGAGCTTTCGATCTC 241
| || ||||| |||||| |||| || | |||||||||||||||||||||||||||||| |
Sbjct 111 CACGGGTCTCAAGATTGTACTATCCGACTCTCTCTCTCGTCTCCAAGAGCTTTCGATCAC 170
Query 242 TCATTGCTTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGGCCGCACAGAGAGCTGTC 301
|| | |||||||||||||||||| || || | |||||||| || ||||| ||||| ||||
Sbjct 171 TCCTGGCTTCACCGGAGCTTTACAAGGCTAGATCACTCTTGGGACGCACGGAGAGTTGTC 230
Query 302 TCTATCTGTGCTTA 315
||||| | ||||||
Sbjct 231 TCTATGTTTGCTTA 244
> Ahg490737 jgi|Araly1|490737|fgenesh2_kg.7__170__AT4G39570.1
Length=1405
Score = 111 bits (60), Expect = 1e-23
Identities = 115/140 (82%), Gaps = 10/140 (7%)
Strand=Plus/Plus
Query 233 TTCGATCTCTCAT-TGCTTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGGCCGCACA 291
||||| ||||| | || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 248 TTCGA-CTCTCCTCTG-TTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGACCGCACC 305
Query 292 GAGAGCTGTCTCTATCTGTGCTTAGG-GATCCCT-TC-TGA-CTTTAACCCTCGCTGGTT 347
||||| ||||||||| |||| ||| || || ||| | | ||||||| ||||||
Sbjct 306 GAGAGTTGTCTCTATTTGTGTTTACAAGAAGGAAATCCTGATCCT-AACCCTCTCTGGTT 364
Query 348 CACTCTCTGCC-GAAAACCT 366
||||||||||| |||| |||
Sbjct 365 CACTCTCTGCCTGAAA-CCT 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5