BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39570.1 Length=1445 Score E Sequences producing significant alignments: (Bits) Value Ahg490737 jgi|Araly1|490737|fgenesh2_kg.7__170__AT4G39570.1 1541 0.0 > Ahg490737 jgi|Araly1|490737|fgenesh2_kg.7__170__AT4G39570.1 Length=1405 Score = 1541 bits (834), Expect = 0.0 Identities = 1065/1171 (91%), Gaps = 37/1171 (3%) Strand=Plus/Plus Query 294 CTCTCCTCCGTTCACCGGAGCTTTACGAGACACGGTCACTATTAGGCCGAACCGAGAGTT 353 |||||||| |||||||||||||||||||||| |||||||| |||| ||| |||||||||| Sbjct 253 CTCTCCTCTGTTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGACCGCACCGAGAGTT 312 Query 354 GTCTGTATTTGTGTTTACAGGAGGGAAATCCTGATCCGAACCCTCTCTGGTTCACTCTCT 413 |||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 313 GTCTCTATTTGTGTTTACAAGAAGGAAATCCTGATCCTAACCCTCTCTGGTTCACTCTCT 372 Query 414 GCATGAAACCTGACAGAACCCTAAAAAATGGCaagaagaagaagaagaagaagaTGTCAA 473 || |||||||||| |||| |||||||||||||| ||||||||| || | |||| ||||| Sbjct 373 GCCTGAAACCTGAAAGAAACCTAAAAAATGGCACCAAGAAGAAG-AG-A-AAGAAGTCAA 429 Query 474 GTGGTAATCTTTTGATCCCAATTCCAGTTCCTAATCCCCCTCTTGAGCACTGGTCAGGTC 533 |||| ||||||||||||||||| |||| ||||||||| ||||||| |||||||||||||| Sbjct 430 GTGGCAATCTTTTGATCCCAATCCCAGGTCCTAATCCTCCTCTTGCGCACTGGTCAGGTC 489 Query 534 ACGCGTCTGTTGGTTCCGATATCTACTT-CTTTGGCGGATACATGGAGGAGAATGTGCGT 592 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 490 ACGCGTCTGTTGGTTCCGATATCTA-TTACTTTGGCGGATACATGGAGGAGAATGTGCCT 548 Query 593 TCCTCTAGAGTCGTGATCCTAGACTGCCGGTCTCACACGTTGCGTGAGGCTCCAAGCCTG 652 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 549 TCATCTAGAGTCGTGATCCTAGACTGCCGGTCTCACACGTTGCGTGAGGCTCCAAGCATG 608 Query 653 CAGATGGAAAGGTCGGACCCTGCTGCTAGTGTTATTGATGGAAAGATTTATGTAGCTGGA 712 ||||||| ||||| ||| ||| |||||||||| ||||||||||||||||||||||||||| Sbjct 609 CAGATGGCAAGGTTGGATCCTTCTGCTAGTGTCATTGATGGAAAGATTTATGTAGCTGGA 668 Query 713 GGTGTCGACGGTGATGATGCAGATTCCTTGTACCCGATAGAAGTGTTCGACATAAAGACC 772 |||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||| Sbjct 669 GGTGTCGACGATGATGATTCAGATTCCTTGTACCCGATTGAGGTGTTCGACATAAAGACC 728 Query 773 CAAATTTGGGATCATAGGCCCATCCCTTACTGGGAGAAAGACTGGGGCGCTCTATCAAGA 832 |||||||||||||||| ||| |||||||||||||||||||||||| | | |||||||||| Sbjct 729 CAAATTTGGGATCATATGCCTATCCCTTACTGGGAGAAAGACTGGAGTGATCTATCAAGA 788 Query 833 AGCGCGTATGTTGATGGAAAGTTCTACTTGACGATTGGGATG-AAGGTTATGGCTTATGA 891 ||||| ||| ||||||||||||||||| ||| ||||||| || ||||||||||||||||| Sbjct 789 AGCGCATATATTGATGGAAAGTTCTACCTGAAGATTGGG-TGTAAGGTTATGGCTTATGA 847 Query 892 TCTAGAGGAAAGTAGATGGGACTTTGCT-GGATATCAGATGGGTCAGAGTTGGTTTTGGT 950 || | ||||||||||||||||||||| | |||||||||||||||| ||| |||| |||| Sbjct 848 TCCAAAGGAAAGTAGATGGGACTTTG-TCGGATATCAGATGGGTCCGAGATGGTCATGGT 906 Query 951 CTTGTAATTGTGTTATAGAGAATGTTTTGTACTGTTATGGT-GATGCTTTCCGATGGTTT 1009 |||||||||| ||||| |||||||||||||||||| ||| | || | ||||||||||| | Sbjct 907 CTTGTAATTGCGTTATCGAGAATGTTTTGTACTGTCATGTTGGA-GGTTTCCGATGGTAT 965 Query 1010 GACACTAAGCTGAGATTGTGGAAAGTTATGAA-GG--TGAAAGGACTACCTAAGTTGTCC 1066 ||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||| Sbjct 966 GACACTAAGCTGAGATTGTGGAAAGATATGAAGGGTTTGAGAGGACTACCTAAGTTGTCC 1025 Query 1067 CGTAATGTCGATGTTAAGATAGCAGATTATGGTGGAAAGATGGCGATTTTTTGGGACAAT 1126 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1026 CGTAATGTCTATGTTAAGATGGCAGATTATGGTGGAAAGATGGCGATTTTTTGGGACAAT 1085 Query 1127 CCT-TCCCCTTCTGCTTCCGATACGAACAAAATAATTCGGTGCGCGGTGATTGCCCTTGA 1185 | | | ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| Sbjct 1086 CGTGT-CCCTTCTGCTTCCAATAAGAACAAAACAATTCGGTGCGCGGTGATTGCCCTTGA 1144 Query 1186 AAGGCCCAACAGTGAAGAGATTTGGGGGACGGTCGAGTGGCATGAGGCAGTGCTTACAGT 1245 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1145 AAGGCCCAACAGTGAAGAGATTTGGGGGACAGTCGAGTGGCATGAGGCAGTGCTTACAGT 1204 Query 1246 TCCTGTGTCATATGAGTTTGAACATGCTCTAGCTGTTACCGTTTGATGAATGACA---GA 1302 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1205 TCCTGTGTCATATGAATTTGAACATGCTCTAGCTGTTACCGTTTGATGAATGACATACGA 1264 Query 1303 --C----TTGAATGTGGTGAATCTTTAATGGTTTGTGGGTATT-TGATCATTTT-GTTGT 1354 | |||||||||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct 1265 GACAGGCTTGAATGTGGTGAATCTTTAATGGTTTGTGGGTATTGT-ATCATTTTTGTTGT 1323 Query 1355 ATGATTGTGTCTTGTCTTTTTAGCTCTTATGACTTATGCTATTGACATTGTTTCACTTGT 1414 ||||||||||||||| | |||||||||| || || | |||||| |||||||||| Sbjct 1324 ATGATTGTGTCTTGTGTAA--AGCTCTTATG-CT-AT--T---GACATTATTTCACTTGT 1374 Query 1415 AAACCTTTGATGGTTAGCTTTCTTTCTGCTG 1445 |||||||||||| ||||||| |||||||||| Sbjct 1375 AAACCTTTGATGCTTAGCTTACTTTCTGCTG 1405 Score = 294 bits (159), Expect = 1e-78 Identities = 220/248 (89%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 4 CGAGTAAAGCAAACGCGTTCGAGAACTCTCATAGCAGTGAAGTGAAGTCAAATCCCTAGA 63 ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| | Sbjct 1 CGAGTAAAGAAAACGCGCTCGAGAACTCTCAAAGCAGTGAAGTGAAGTCAAATCCCTAAA 60 Query 64 TTGACTTGCTCAACGGCGATTTCATCTCGATAATT-AGCCAATGTCTTCACCGGAGAGGA 122 || ||||||||||||| ||||| ||||||||||| ||||||||| ||||| ||| ||| Sbjct 61 TTCACTTGCTCAACGGTGATTTTTTCTCGATAATTCCGCCAATGTCGTCACCTGAGCGGA 120 Query 123 AGAGGAAGAGGGTGACGTCGACGAAGAATCCATCGGTTAAGAAGAAGAAGAAGATTTCAC 182 |||||||||||||||||||||||||||| |||||| ||| ||| || || ||| |||||| Sbjct 121 AGAGGAAGAGGGTGACGTCGACGAAGAAGCCATCGCTTAGGAA-AA-AA-AAGCTTTCAC 177 Query 183 CGGTGC--C-G---ACGCCGATACCGTCACTTCCTGATGATTTGCTTGTAAGTATCTTCG 236 |||||| | | |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 178 CGGTGCTACCGCCGACGCCGATTCCGTCACTTCCTGATGATTTGCTTGTAAGTATCTTCG 237 Query 237 CACGAGTC 244 |||| ||| Sbjct 238 CACGCGTC 245 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54050057655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5