BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39570.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490737 jgi|Araly1|490737|fgenesh2_kg.7__170__AT4G39570.1 1541 0.0
> Ahg490737 jgi|Araly1|490737|fgenesh2_kg.7__170__AT4G39570.1
Length=1405
Score = 1541 bits (834), Expect = 0.0
Identities = 1065/1171 (91%), Gaps = 37/1171 (3%)
Strand=Plus/Plus
Query 294 CTCTCCTCCGTTCACCGGAGCTTTACGAGACACGGTCACTATTAGGCCGAACCGAGAGTT 353
|||||||| |||||||||||||||||||||| |||||||| |||| ||| ||||||||||
Sbjct 253 CTCTCCTCTGTTCACCGGAGCTTTACGAGACTCGGTCACTCTTAGACCGCACCGAGAGTT 312
Query 354 GTCTGTATTTGTGTTTACAGGAGGGAAATCCTGATCCGAACCCTCTCTGGTTCACTCTCT 413
|||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 313 GTCTCTATTTGTGTTTACAAGAAGGAAATCCTGATCCTAACCCTCTCTGGTTCACTCTCT 372
Query 414 GCATGAAACCTGACAGAACCCTAAAAAATGGCaagaagaagaagaagaagaagaTGTCAA 473
|| |||||||||| |||| |||||||||||||| ||||||||| || | |||| |||||
Sbjct 373 GCCTGAAACCTGAAAGAAACCTAAAAAATGGCACCAAGAAGAAG-AG-A-AAGAAGTCAA 429
Query 474 GTGGTAATCTTTTGATCCCAATTCCAGTTCCTAATCCCCCTCTTGAGCACTGGTCAGGTC 533
|||| ||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||
Sbjct 430 GTGGCAATCTTTTGATCCCAATCCCAGGTCCTAATCCTCCTCTTGCGCACTGGTCAGGTC 489
Query 534 ACGCGTCTGTTGGTTCCGATATCTACTT-CTTTGGCGGATACATGGAGGAGAATGTGCGT 592
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 490 ACGCGTCTGTTGGTTCCGATATCTA-TTACTTTGGCGGATACATGGAGGAGAATGTGCCT 548
Query 593 TCCTCTAGAGTCGTGATCCTAGACTGCCGGTCTCACACGTTGCGTGAGGCTCCAAGCCTG 652
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 TCATCTAGAGTCGTGATCCTAGACTGCCGGTCTCACACGTTGCGTGAGGCTCCAAGCATG 608
Query 653 CAGATGGAAAGGTCGGACCCTGCTGCTAGTGTTATTGATGGAAAGATTTATGTAGCTGGA 712
||||||| ||||| ||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 609 CAGATGGCAAGGTTGGATCCTTCTGCTAGTGTCATTGATGGAAAGATTTATGTAGCTGGA 668
Query 713 GGTGTCGACGGTGATGATGCAGATTCCTTGTACCCGATAGAAGTGTTCGACATAAAGACC 772
|||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 669 GGTGTCGACGATGATGATTCAGATTCCTTGTACCCGATTGAGGTGTTCGACATAAAGACC 728
Query 773 CAAATTTGGGATCATAGGCCCATCCCTTACTGGGAGAAAGACTGGGGCGCTCTATCAAGA 832
|||||||||||||||| ||| |||||||||||||||||||||||| | | ||||||||||
Sbjct 729 CAAATTTGGGATCATATGCCTATCCCTTACTGGGAGAAAGACTGGAGTGATCTATCAAGA 788
Query 833 AGCGCGTATGTTGATGGAAAGTTCTACTTGACGATTGGGATG-AAGGTTATGGCTTATGA 891
||||| ||| ||||||||||||||||| ||| ||||||| || |||||||||||||||||
Sbjct 789 AGCGCATATATTGATGGAAAGTTCTACCTGAAGATTGGG-TGTAAGGTTATGGCTTATGA 847
Query 892 TCTAGAGGAAAGTAGATGGGACTTTGCT-GGATATCAGATGGGTCAGAGTTGGTTTTGGT 950
|| | ||||||||||||||||||||| | |||||||||||||||| ||| |||| ||||
Sbjct 848 TCCAAAGGAAAGTAGATGGGACTTTG-TCGGATATCAGATGGGTCCGAGATGGTCATGGT 906
Query 951 CTTGTAATTGTGTTATAGAGAATGTTTTGTACTGTTATGGT-GATGCTTTCCGATGGTTT 1009
|||||||||| ||||| |||||||||||||||||| ||| | || | ||||||||||| |
Sbjct 907 CTTGTAATTGCGTTATCGAGAATGTTTTGTACTGTCATGTTGGA-GGTTTCCGATGGTAT 965
Query 1010 GACACTAAGCTGAGATTGTGGAAAGTTATGAA-GG--TGAAAGGACTACCTAAGTTGTCC 1066
||||||||||||||||||||||||| |||||| || ||| |||||||||||||||||||
Sbjct 966 GACACTAAGCTGAGATTGTGGAAAGATATGAAGGGTTTGAGAGGACTACCTAAGTTGTCC 1025
Query 1067 CGTAATGTCGATGTTAAGATAGCAGATTATGGTGGAAAGATGGCGATTTTTTGGGACAAT 1126
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1026 CGTAATGTCTATGTTAAGATGGCAGATTATGGTGGAAAGATGGCGATTTTTTGGGACAAT 1085
Query 1127 CCT-TCCCCTTCTGCTTCCGATACGAACAAAATAATTCGGTGCGCGGTGATTGCCCTTGA 1185
| | | ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1086 CGTGT-CCCTTCTGCTTCCAATAAGAACAAAACAATTCGGTGCGCGGTGATTGCCCTTGA 1144
Query 1186 AAGGCCCAACAGTGAAGAGATTTGGGGGACGGTCGAGTGGCATGAGGCAGTGCTTACAGT 1245
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1145 AAGGCCCAACAGTGAAGAGATTTGGGGGACAGTCGAGTGGCATGAGGCAGTGCTTACAGT 1204
Query 1246 TCCTGTGTCATATGAGTTTGAACATGCTCTAGCTGTTACCGTTTGATGAATGACA---GA 1302
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1205 TCCTGTGTCATATGAATTTGAACATGCTCTAGCTGTTACCGTTTGATGAATGACATACGA 1264
Query 1303 --C----TTGAATGTGGTGAATCTTTAATGGTTTGTGGGTATT-TGATCATTTT-GTTGT 1354
| |||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 1265 GACAGGCTTGAATGTGGTGAATCTTTAATGGTTTGTGGGTATTGT-ATCATTTTTGTTGT 1323
Query 1355 ATGATTGTGTCTTGTCTTTTTAGCTCTTATGACTTATGCTATTGACATTGTTTCACTTGT 1414
||||||||||||||| | |||||||||| || || | |||||| ||||||||||
Sbjct 1324 ATGATTGTGTCTTGTGTAA--AGCTCTTATG-CT-AT--T---GACATTATTTCACTTGT 1374
Query 1415 AAACCTTTGATGGTTAGCTTTCTTTCTGCTG 1445
|||||||||||| ||||||| ||||||||||
Sbjct 1375 AAACCTTTGATGCTTAGCTTACTTTCTGCTG 1405
Score = 294 bits (159), Expect = 1e-78
Identities = 220/248 (89%), Gaps = 10/248 (4%)
Strand=Plus/Plus
Query 4 CGAGTAAAGCAAACGCGTTCGAGAACTCTCATAGCAGTGAAGTGAAGTCAAATCCCTAGA 63
||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1 CGAGTAAAGAAAACGCGCTCGAGAACTCTCAAAGCAGTGAAGTGAAGTCAAATCCCTAAA 60
Query 64 TTGACTTGCTCAACGGCGATTTCATCTCGATAATT-AGCCAATGTCTTCACCGGAGAGGA 122
|| ||||||||||||| ||||| ||||||||||| ||||||||| ||||| ||| |||
Sbjct 61 TTCACTTGCTCAACGGTGATTTTTTCTCGATAATTCCGCCAATGTCGTCACCTGAGCGGA 120
Query 123 AGAGGAAGAGGGTGACGTCGACGAAGAATCCATCGGTTAAGAAGAAGAAGAAGATTTCAC 182
|||||||||||||||||||||||||||| |||||| ||| ||| || || ||| ||||||
Sbjct 121 AGAGGAAGAGGGTGACGTCGACGAAGAAGCCATCGCTTAGGAA-AA-AA-AAGCTTTCAC 177
Query 183 CGGTGC--C-G---ACGCCGATACCGTCACTTCCTGATGATTTGCTTGTAAGTATCTTCG 236
|||||| | | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 CGGTGCTACCGCCGACGCCGATTCCGTCACTTCCTGATGATTTGCTTGTAAGTATCTTCG 237
Query 237 CACGAGTC 244
|||| |||
Sbjct 238 CACGCGTC 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5