BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39580.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943948 jgi|Araly1|943948|scaffold_700177.1 1801 0.0
Ahg315222 jgi|Araly1|315222|fgenesh1_pm.C_scaffold_2000255 97.1 2e-19
> Ahg943948 jgi|Araly1|943948|scaffold_700177.1
Length=1175
Score = 1801 bits (975), Expect = 0.0
Identities = 1079/1130 (95%), Gaps = 4/1130 (0%)
Strand=Plus/Plus
Query 1 ATGAACGAAGAGGAGGCACCATCTGAGCAGAAGAAGACGTTATCATTGGTACCCTCACCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 ATGAACGAAGAGGAGGCACCATCTGAGCAGAAGAAGACGTTATCATTGGTACCCTCACCG 87
Query 61 ACCACGAATCTGTTTCTTCCTGATGACATACTTTTGAGCT-CTCTAAGCCGCATTTCAAG 119
| ||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 88 ATCACAAATCTCTTTCTTCCTGATGACATACTTTTGAGCTCCT-TAAGCCGCATTTCAAG 146
Query 120 ATTGTATTACCCAACTTTCTCTCTTGTCTCCAAGAGTTTCCGCTCTCTAATTGCTTCACC 179
||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 147 ATTGTATTACCCAACTTTCTCCCTTGTCTCCAAGAGTTTCCGGTCTCTCGTTGCTTCACC 206
Query 180 AGAGCTTTATCAGACTCGCTCCATCCTCGGCCGCACCGAGAGTTGTCTTTATGTGTCCTT 239
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 207 AGAGCTTTATCTGACTCGGTCCATCCTCGGCCGCACCGAGAGTTGTCTTTATGTGTCCTT 266
Query 240 ACGGTTACTTAACGACTCTAACCTCCGATGGTACACTCTCTGTCGAGTTCCGGATCGAAA 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 267 ACGGTTACTTAACGACTCTAACCTCCGATGGTACACTCTCTGTCGTGTTCCGGATCGAAA 326
Query 300 ACTAACAAATTTCTCAGGTGGTCATTTATTGGTTCCGATCTTATCTCGCTATGCTCCTCC 359
||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 327 ACTAACAAATTTCTCAGGTGGTCATTTATTGGTCCCGATCCTATCTCGCCATGCTCCTCC 386
Query 360 TGCTCATTGGTCGAGTGTGGTCGCTGTTGATTATAATATCTACGCTATTGGAGGGCCTAT 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 387 TGCTCATTGGTCGAGTGTGGTCGCTGTTGATTCTAATATCTACGCTATTGGAGGGCCTAT 446
Query 420 CAATGATGCACCATCCTCTAGCGTCTCGGTCTTGGATTGTCAGTGTGAGAAATGGCGTGA 479
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 447 CAATGATGCACCATCCTCTAGCGTCTCGGTCTTGGATTGTCAGTGTGACATGTGGCACGA 506
Query 480 AGCTCCGTCCA-TGCGGGTGGCACGAAACTACCCCACTGCGACCGTTCTTGATGGGAAGA 538
|||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 507 AGCTCCA-CCAATGCGGGTGGCACGAAACTACCCCACTGCGACCGTTCTTAACGGGAAGA 565
Query 539 TATATGTAGCAGGAGGCTGTGAAGATTGCACTTCATTGGATTGTATAGAAGTGTTTGATC 598
| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 566 TTTATGTAGCAGGAGGCTGCGAAGAATGCATTTCATTGGATTGTATAGAAGTGTTTGATC 625
Query 599 CTAAGACTCAAACTTGGGACTCTGTGGCAAGTCCTGGCACCGAGAGATGCGAGAGACTTG 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTAAGACTCAGACTTGGGACTCTGTGGCAAGTCCTGGCACCGAGAGATGCGAGAGACTTG 685
Query 659 TATACAAGAGCGTAGGGATCGAAGGAAAGTATCACTTGTTTGGCGGTGCGGGTCATGTGG 718
| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 686 TGTACAAGAGCGTTGGGATCGAAGGAAAATATCACTTGTTTGGGGGTGCGGGTCATGTGG 745
Query 719 CTTACGACCCGAAAGAAGGTAGATGGGACTCAGTTGGAATGGATATGGAGATGGGTCGGA 778
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 746 CTTACGATCCGAAAGAAGGTAGATGGGACTCAGTTGGAATGGATATGGATATGGGTCGGA 805
Query 779 CATGGGTTTCATATTGTGTGATAAACAATATATTGTTCTATTATAATGATAGAGAGTTTA 838
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 806 CATGGGTTTCGTATTGTGTGATAAACAATATATTGTTCTATTATAATAATAGAAAGTTTA 865
Query 839 AATGGTATGACTATAAAGGAAGATTTTGGAGAAAGTTGATGGGGTTGGAACGGCTAATCA 898
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 866 AATGGTATGACTATAAAGGAGGATTTTGGAGAAAGTTGATGGGGTTGGAACGGCTAATCA 925
Query 899 AGTTTCTATGCTATAGCCGTGTTAACTTGGCGGCTTACGGTGAGAAGATGGCGGTTTTAT 958
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 926 AGTTTCTATGCTATAGCCGTGTTAACTTAGCGGCTTACGGTGATAAGATGGCGGTTTTAT 985
Query 959 GGGATACTTTTGTGCCTTCTAGCTCTAAGAACAAGATGATTTGGTGTGCGGAGATTACGA 1018
|||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 986 GGGAAACTTCTGTGCCTTCTAGCTCCAAGAACAAGATGATTTGGTGTGCGGAGATTACAA 1045
Query 1019 TTGAAAGGCACGACATATACGAGATTTGCGGTAAGACTGAATGGTTTGATGTTGTGCTTA 1078
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1046 TTGAAAGGCACGACATATACGAGATTTGCGGTAAGACCCAGTGGTTTGATGTTGTGCTTA 1105
Query 1079 GAGTTCCCAAATCATATGAATTGGTACATGTTCTTGCTGCTACTGTTTGA 1128
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1106 GAGTTCCCAAATCACATGAATTGGTACATGTTCTTGCTGCTACTGTTTGA 1155
> Ahg315222 jgi|Araly1|315222|fgenesh1_pm.C_scaffold_2000255
Length=1125
Score = 97.1 bits (52), Expect = 2e-19
Identities = 81/94 (86%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 527 TTGATGGGAAGATATATGTAGCAGGAGGCTGTGAAGATTG-CA-CT-T-CATTGGATTGT 582
|||||||||||||||||||||||||||||||| |||| | || || | | ||| | ||
Sbjct 533 TTGATGGGAAGATATATGTAGCAGGAGGCTGTAAAGAC-GACATCTGTTCCTTGTACTGG 591
Query 583 ATAGAAGTGTTTGATCCTAAGACTCAAACTTGGG 616
|| |||||||||||||| ||||||||||||||||
Sbjct 592 ATGGAAGTGTTTGATCCAAAGACTCAAACTTGGG 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5