BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39580.1 Length=1128 Score E Sequences producing significant alignments: (Bits) Value Ahg943948 jgi|Araly1|943948|scaffold_700177.1 1801 0.0 Ahg315222 jgi|Araly1|315222|fgenesh1_pm.C_scaffold_2000255 97.1 2e-19 > Ahg943948 jgi|Araly1|943948|scaffold_700177.1 Length=1175 Score = 1801 bits (975), Expect = 0.0 Identities = 1079/1130 (95%), Gaps = 4/1130 (0%) Strand=Plus/Plus Query 1 ATGAACGAAGAGGAGGCACCATCTGAGCAGAAGAAGACGTTATCATTGGTACCCTCACCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28 ATGAACGAAGAGGAGGCACCATCTGAGCAGAAGAAGACGTTATCATTGGTACCCTCACCG 87 Query 61 ACCACGAATCTGTTTCTTCCTGATGACATACTTTTGAGCT-CTCTAAGCCGCATTTCAAG 119 | ||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 88 ATCACAAATCTCTTTCTTCCTGATGACATACTTTTGAGCTCCT-TAAGCCGCATTTCAAG 146 Query 120 ATTGTATTACCCAACTTTCTCTCTTGTCTCCAAGAGTTTCCGCTCTCTAATTGCTTCACC 179 ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| Sbjct 147 ATTGTATTACCCAACTTTCTCCCTTGTCTCCAAGAGTTTCCGGTCTCTCGTTGCTTCACC 206 Query 180 AGAGCTTTATCAGACTCGCTCCATCCTCGGCCGCACCGAGAGTTGTCTTTATGTGTCCTT 239 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 207 AGAGCTTTATCTGACTCGGTCCATCCTCGGCCGCACCGAGAGTTGTCTTTATGTGTCCTT 266 Query 240 ACGGTTACTTAACGACTCTAACCTCCGATGGTACACTCTCTGTCGAGTTCCGGATCGAAA 299 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 267 ACGGTTACTTAACGACTCTAACCTCCGATGGTACACTCTCTGTCGTGTTCCGGATCGAAA 326 Query 300 ACTAACAAATTTCTCAGGTGGTCATTTATTGGTTCCGATCTTATCTCGCTATGCTCCTCC 359 ||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| Sbjct 327 ACTAACAAATTTCTCAGGTGGTCATTTATTGGTCCCGATCCTATCTCGCCATGCTCCTCC 386 Query 360 TGCTCATTGGTCGAGTGTGGTCGCTGTTGATTATAATATCTACGCTATTGGAGGGCCTAT 419 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 387 TGCTCATTGGTCGAGTGTGGTCGCTGTTGATTCTAATATCTACGCTATTGGAGGGCCTAT 446 Query 420 CAATGATGCACCATCCTCTAGCGTCTCGGTCTTGGATTGTCAGTGTGAGAAATGGCGTGA 479 |||||||||||||||||||||||||||||||||||||||||||||||| | |||| || Sbjct 447 CAATGATGCACCATCCTCTAGCGTCTCGGTCTTGGATTGTCAGTGTGACATGTGGCACGA 506 Query 480 AGCTCCGTCCA-TGCGGGTGGCACGAAACTACCCCACTGCGACCGTTCTTGATGGGAAGA 538 |||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 507 AGCTCCA-CCAATGCGGGTGGCACGAAACTACCCCACTGCGACCGTTCTTAACGGGAAGA 565 Query 539 TATATGTAGCAGGAGGCTGTGAAGATTGCACTTCATTGGATTGTATAGAAGTGTTTGATC 598 | ||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| Sbjct 566 TTTATGTAGCAGGAGGCTGCGAAGAATGCATTTCATTGGATTGTATAGAAGTGTTTGATC 625 Query 599 CTAAGACTCAAACTTGGGACTCTGTGGCAAGTCCTGGCACCGAGAGATGCGAGAGACTTG 658 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 626 CTAAGACTCAGACTTGGGACTCTGTGGCAAGTCCTGGCACCGAGAGATGCGAGAGACTTG 685 Query 659 TATACAAGAGCGTAGGGATCGAAGGAAAGTATCACTTGTTTGGCGGTGCGGGTCATGTGG 718 | ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 686 TGTACAAGAGCGTTGGGATCGAAGGAAAATATCACTTGTTTGGGGGTGCGGGTCATGTGG 745 Query 719 CTTACGACCCGAAAGAAGGTAGATGGGACTCAGTTGGAATGGATATGGAGATGGGTCGGA 778 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 746 CTTACGATCCGAAAGAAGGTAGATGGGACTCAGTTGGAATGGATATGGATATGGGTCGGA 805 Query 779 CATGGGTTTCATATTGTGTGATAAACAATATATTGTTCTATTATAATGATAGAGAGTTTA 838 |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 806 CATGGGTTTCGTATTGTGTGATAAACAATATATTGTTCTATTATAATAATAGAAAGTTTA 865 Query 839 AATGGTATGACTATAAAGGAAGATTTTGGAGAAAGTTGATGGGGTTGGAACGGCTAATCA 898 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 866 AATGGTATGACTATAAAGGAGGATTTTGGAGAAAGTTGATGGGGTTGGAACGGCTAATCA 925 Query 899 AGTTTCTATGCTATAGCCGTGTTAACTTGGCGGCTTACGGTGAGAAGATGGCGGTTTTAT 958 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 926 AGTTTCTATGCTATAGCCGTGTTAACTTAGCGGCTTACGGTGATAAGATGGCGGTTTTAT 985 Query 959 GGGATACTTTTGTGCCTTCTAGCTCTAAGAACAAGATGATTTGGTGTGCGGAGATTACGA 1018 |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 986 GGGAAACTTCTGTGCCTTCTAGCTCCAAGAACAAGATGATTTGGTGTGCGGAGATTACAA 1045 Query 1019 TTGAAAGGCACGACATATACGAGATTTGCGGTAAGACTGAATGGTTTGATGTTGTGCTTA 1078 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1046 TTGAAAGGCACGACATATACGAGATTTGCGGTAAGACCCAGTGGTTTGATGTTGTGCTTA 1105 Query 1079 GAGTTCCCAAATCATATGAATTGGTACATGTTCTTGCTGCTACTGTTTGA 1128 |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1106 GAGTTCCCAAATCACATGAATTGGTACATGTTCTTGCTGCTACTGTTTGA 1155 > Ahg315222 jgi|Araly1|315222|fgenesh1_pm.C_scaffold_2000255 Length=1125 Score = 97.1 bits (52), Expect = 2e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 527 TTGATGGGAAGATATATGTAGCAGGAGGCTGTGAAGATTG-CA-CT-T-CATTGGATTGT 582 |||||||||||||||||||||||||||||||| |||| | || || | | ||| | || Sbjct 533 TTGATGGGAAGATATATGTAGCAGGAGGCTGTAAAGAC-GACATCTGTTCCTTGTACTGG 591 Query 583 ATAGAAGTGTTTGATCCTAAGACTCAAACTTGGG 616 || |||||||||||||| |||||||||||||||| Sbjct 592 ATGGAAGTGTTTGATCCAAAGACTCAAACTTGGG 625 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42049577451 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5