BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39590.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490739 jgi|Araly1|490739|fgenesh2_kg.7__172__AT4G39590.1 1624 0.0
> Ahg490739 jgi|Araly1|490739|fgenesh2_kg.7__172__AT4G39590.1
Length=1354
Score = 1624 bits (879), Expect = 0.0
Identities = 1222/1380 (89%), Gaps = 54/1380 (4%)
Strand=Plus/Plus
Query 19 ATGTCTTCCACATCCAGATCTTCCGCCGCCAATAATCGCAAAGATCCACCGCGTAAGAAA 78
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1 ATGTCTTCCACATCCAGATCTTCCGCCGCCACTAATCGCAAAGATCCACCGGGTAAGAAA 60
Query 79 AACAAGGAGACGCCATCTCCGGTGACGAGAGAACCAACCTCGATCGATTCACTTCCTAAT 138
||| | | | || | |||||| |||||||| |||||||| ||||||| |||||
Sbjct 61 AAC----A-A-G-CA-----GATGACGACAGAACCAAACTCGATCGGTTCACTTTCTAAT 108
Query 139 GACTTGTTATTGAACTGCTTTGCCCGTGTCTCTAGAATGTATTATCCCGCTCTGTCTCGT 198
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 109 GACTTGTTATTGAACTGCTTTGCCCGTGTCTCTAGAATGTATTATCCCGCTCTCTCTCGC 168
Query 199 GTCTCCAAGAGATTTCGATCCATCGTTACTTCACCAGAGATTTACAACACTCGATCTCTC 258
|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 169 GTCTCCAAAAGATTCCGATCCATCGTTACTTCACCAGAGATTTACCACACTCGATCTCTC 228
Query 259 TTAAACCGTACCGAGAAGTGTCTCTATCTATGCTTACGCTTCCCTTTCGACAATAACACA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TTAAACCGTACCGAGAAGTGTCTCTATCTATGCTTACGCTTCCCTTTCGACAATAACACA 288
Query 319 CACTGGTTCACTCTCTACCAAAACCCTAATCGAACCGTAAG---C--G---A----CAAG 366
|| ||||||||||||||||| ||||||||||||| |||||| | | | ||||
Sbjct 289 CATTGGTTCACTCTCTACCAGAACCCTAATCGAAGCGTAAGCAACAAGTCAAGTGGCAAG 348
Query 367 GTTTTTCTCCAAATTCCATCTCCCCAGTATCCTCTTACGCTATCGTCGAATCTCGTCGCC 426
||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct 349 GTTTTGGTCCAAATTCCATCTCCCGAGTATCCTCTTACGCAATCGTCGAATCTCGTAGCG 408
Query 427 GTTGGTTCTAATATCTACAGAATCGGTGGAACCGTTGGTGATGATTCCTGCCCTCTCGGC 486
||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 409 GTTGGTTCTAATATCTACAAAATTGGTGGAACCGTTGGTGATGATTTCTGCCCTCTCGGC 468
Query 487 TTCGATAGGGAACCTTCTTCGAAAGTCTCTATCCTGGATTGTCGGTCTCACACGTGGCGT 546
| |||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 469 TGGGATAGGAAACCTTCTTCTAAAGTCTCTGTCCTGGATTGTCGGTCTCACACGTGGCGC 528
Query 547 GATGGTCCGAGGATGCGATTGAACAGGAGATCCTCCACAACAAGCGTAGTTGATGGGAAG 606
|||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 529 GATGGTCCAAGAATGCGATTGGACAGGAAATCCTCCACAACAAGCGTAGTTGATGGGAAG 588
Query 607 ATATATGTAACAGGAGGCACTGAAGACACGGATAATCCCTCACACTGGATCGAAGTGTTT 666
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 589 ATATATGTAACAGGAGGCACTAAAGACACGGATAATCCCTCAAACTGGATCGAAGTGTTT 648
Query 667 GATCCAAAAACACAAAGTTGGGGAACTGTGACGAACCCTCACATCGTCAAGG-TTTGGGA 725
|||||||||||||||||||||||| | || |||||||||| |||||| ||| |||||||
Sbjct 649 GATCCAAAAACACAAAGTTGGGGATCCGTTACGAACCCTCGCATCGT-GAGGCTTTGGGA 707
Query 726 GGAGGTATGCTATAGACGTGCAGTCAAAAGCATAGGACATGACGGAAAATTATACCTGTC 785
||||| | |||||||||||| ||||||||||||||||||||| |||||| |||||||||
Sbjct 708 GGAGGAAAGCTATAGACGTGTAGTCAAAAGCATAGGACATGAAGGAAAACTATACCTGTT 767
Query 786 TGGGGATAAGTATGTGGTTTACGACCCAGATGAAGGTAAATGGAACTCAGTAGAAGAGCA 845
||||||| ||| ||| |||||| | ||||| ||||||| ||||||| |||||| |||| |
Sbjct 768 TGGGGATGAGTTTGTAGTTTACAATCCAGAGGAAGGTATATGGAACCCAGTAGGAGAGGA 827
Query 846 TTGGCTTATAGGTTATGCAAT-AGGCTCGAGTAATTGCGTGGTCGACAACATCTTGTTCT 904
| ||||||| |||| |||| | | | |||||| |||||||| | ||||||||||||||||
Sbjct 828 TAGGCTTATCGGTTGTGCATTAAAG-TCGAGTTATTGCGTGATAGACAACATCTTGTTCT 886
Query 905 ACTGGGATCAAGGAGTGTTCAAATGGTATGACAGTAAGGTAAGTTCATGGAAGCAATTGA 964
|||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 887 ACTGGGATCAAGGAGTGTTCAAATGGTACGACAGTAAGGTTCCTTCATGGAAGGAATTGA 946
Query 965 AAGGCCTTGAAGGGTTACCTGATGATTTTAGCCAGCGTGAGTATTGTAAG-TTGGTGGAT 1023
||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||
Sbjct 947 AAGGCCTTGAAGGGTTACC---TGATTTTAGCCACCGTGAGTATTGT-AGATTGGTGGAT 1002
Query 1024 CTTGGTGGGAAGATGGCGGTGTTGTGGGATAAATGGGA--GTA-TTCTGGGGTC-TGCAT 1079
||||||| |||||||||||||||||||||| |||||| ||| ||||| || | | ||
Sbjct 1003 TTTGGTGGAAAGATGGCGGTGTTGTGGGATATATGGGAGTGTACTTCTGAGG-CATATAT 1061
Query 1080 ---GATTTTCTGTGCTGAGATTTCACTTGAAAAGCGCGATGGAGATGAGATTTGGGGGAA 1136
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GGCGATTTGGTGTGCTGAGATTTCACTTGAAAAGCGCGATGGAGATGAGATTTGGGGGAA 1121
Query 1137 GGTTGAGTGGTTTGATACTGTACTTGAAGTTGGAGCGTCTTGTAGCTTGAA-AAGTGCGG 1195
||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 1122 GGTTGAGTGGTTTGATACTGTGCTTGCAGTTGGAGCGTCTTGTAGCTTGATCAA-TGCGA 1180
Query 1196 ATGCTCTTTCAGCTTCTGTTTGATGAAATGATGACTATTCGTAAGAACAAGCTTGAAGAA 1255
|||||||||| |||||||||||||||||||| |||||||| | |||||| |||||||||
Sbjct 1181 ATGCTCTTTCCGCTTCTGTTTGATGAAATGACGACTATTCATGAGAACATGCTTGAAGAG 1240
Query 1256 TGATGAAATTAGAAACACTACTTGAATAATGTGGGTAGCTTCATTTTGTTTTGAATTTTT 1315
||||||||||||||||| || || | ||||| ||||| ||| ||||||||||||| ||
Sbjct 1241 TGATGAAATTAGAAACAATA-TTCACTAATGCGGGTAATTTCGTTTTGTTTTGAATAGTT 1299
Query 1316 ACGTTTCC----T-TTTCCATTAGTATGCAACTATGTTGAATGATCGGTTCATGTTTTTA 1370
||||| | ||||| || | | || ||||||||||||||| ||||||||||||
Sbjct 1300 GCGTTTTTGAGATGTTTCC-TT--TCCG-AA-TATGTTGAATGATCGTTTCATGTTTTTA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5