BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39600.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330592 jgi|Araly1|330592|fgenesh1_pm.C_scaffold_7002819 545 2e-154
Ahg327908 jgi|Araly1|327908|fgenesh1_pm.C_scaffold_7000135 156 4e-37
Ahg949864 jgi|Araly1|949864|scaffold_801751.1 110 3e-23
> Ahg330592 jgi|Araly1|330592|fgenesh1_pm.C_scaffold_7002819
Length=1035
Score = 545 bits (295), Expect = 2e-154
Identities = 656/821 (80%), Gaps = 62/821 (8%)
Strand=Plus/Plus
Query 309 TCTTCTGGTTCCGATCCCAATCATCAACTCTCCTCCTCTGGAATGGTCTAGCATCGTCGC 368
||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||| |
Sbjct 252 TCTTCTGGTTCCGATCCCAATCATCAACTCTCCACCTGTGGAATGGTCTAATATTGTCTC 311
Query 369 TGTTGGTTC-ACATCTCTACGCCATTAACGGACCTATCGAAGATGCTCCATGCTCTAACG 427
||||| ||| | |||||||||||||| | | | | || | | | | || || |
Sbjct 312 TGTTGATTCTA-ATCTCTACGCCATT-A--G--CGA-CG-A-A-G-T---TG--CT---G 352
Query 428 TCTCCTTCCTTGACTGTCGATCTCACACTTGGCTCGAAGCTCCAAGCATGCGAGTGGCTC 487
|||| ||||||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 353 TCTCTTTCCTTGACTGTCGAACTCACACTTGGCTCGAAGCTCCAAGCTTGCGATTGACTA 412
Query 488 ACAC-CAATAGCCAA-CTTGATGGGAAGATGTATTTAGCAGGAAGCTCCGAGAATGTAGA 545
|||| ||| || || ||||||||| ||||||||||| ||||||||| || ||| |||
Sbjct 413 ACACTCAA-AG-TAAGCTTGATGGGGAGATGTATTTACCAGGAAGCTGTGAAAATCCAGA 470
Query 546 TTCTTTGAACTGTATTCAAG-TGTTCAGCACAAAGACACAAACTTGGAAGCCTGTGCCGT 604
|||||| ||||||||| ||| || |||||| |||||| ||||||| |||||| || |
Sbjct 471 TTCTTTCAACTGTATTGAAGTTG-TCAGCAAAAAGACTCAAACTTTGAAGCCCCAGCGGC 529
Query 605 TCCAAAAGCGGA-TATTCGGAGTCGGAGATCTGGAAGGAAAGATTTATACGATCTGTAGG 663
|| |||||| || | || ||||| ||||||| |||||||| |||| | |||| | |
Sbjct 530 TCGAAAAGCCGAGT-TTAGGAGTTTTAGATCTGCAAGGAAAGGTTTACATGATC--CACG 586
Query 664 ACA--GAGTGTGG---ACAGGGTGTGACTATAAAGC-CAAAGGATTTAACATGTGACGTG 717
| | |||| ||| | | |||||| | |||| | ||||||||||| || || |||
Sbjct 587 AAATCGAGTCTGGTAAAAAAGGTGTGGTTTTAAA-CTTTAAGGATTTAACTTGGGAAGTG 645
Query 718 GTAGGATTTTGTGGGGAGAAGGATTGGTCTTCTGTTTGTATGATAGGGAACATAGTCTAT 777
|||||||| ||||| | || |||| |||||||| ||||||||| |||||||||||||
Sbjct 646 GTAGGATTAGGTGGGAATAATTTTTGGGCTTCTGTTGGTATGATAGAGAACATAGTCTAT 705
Query 778 T-TT-T-ATAGACCCAATGGGGAGTTTCTATGGATATACTCTGGAAAAGG-GGAA-TCGG 832
| || | ||| || || |||||||||||| ||| |||||| | || |||| |||| ||
Sbjct 706 TCTTATAATAAACGCAGTGGGGAGTTTCTGTGGTTATACT-TTGACAAGGAGGAAGAAGG 764
Query 833 CTAG-GA-GAAATCTAAAGGGTTTAGAAGGGTTACCTAAGTTTGAT-GAT--TATGCTAG 887
| | || ||||| |||||||||||||||||||||||||||||||| | | || | ||
Sbjct 765 -T-GCGAGGAAAT-TAAAGGGTTTAGAAGGGTTACCTAAGTTTGATAG-TGGTA-G-TAC 818
Query 888 TGTTAAATTGGTGGATTATGGTGGTAAGTTGATGGTTTTGTGGGA-CACTTATGTCCCTG 946
||||| ||||||| |||||||||||||| |||||||||||||||| || |||| ||||
Sbjct 819 TGTTAGATTGGTGAATTATGGTGGTAAGCTGATGGTTTTGTGGGATCAAA-ATGTTCCTG 877
Query 947 AAAGTGAGTCT-A--AGGAGAAGATGATTTGGTGCGCAGAGATTTCGCTTCaaaaaaaGT 1003
|||||| | | | ||||||||||||||||||| || |||||||||||| | ||| |
Sbjct 878 CAAGTGACTTTGAGGAGGAGAAGATGATTTGGTGTGCCGAGATTTCGCTTGACAAAC-G- 935
Query 1004 GCAACAATGAAGAGATTTGGGGGACGGTCGAGTGGTTCGACGCTGTGCTTACAGTCCCTG 1063
| || ||||| ||||||||||| | |||||||||||| || ||||||||||||||||||
Sbjct 936 G-AAGAATGATGAGATTTGGGGCAAGGTCGAGTGGTTTGAAGCTGTGCTTACAGTCCCTA 994
Query 1064 AGGATTGTAAATTCGTGCGTGCTATTGCTGCTACTGTTTGA 1104
| | || | |||| ||| |||||||||||||||||||||||
Sbjct 995 AAGCTTATCAATTTGTGTGTGCTATTGCTGCTACTGTTTGA 1035
> Ahg327908 jgi|Araly1|327908|fgenesh1_pm.C_scaffold_7000135
Length=1131
Score = 156 bits (84), Expect = 4e-37
Identities = 343/462 (74%), Gaps = 41/462 (9%)
Strand=Plus/Plus
Query 42 TCCTTCACTTCCAGAAGATTTGGTAGTGAGCT-GCTTAGCTCGTGTGTCGAGATTGTATT 100
||| |||||||| | |||||| || | || | | | || || || ||||||||| | |
Sbjct 81 TCCATCACTTCCCGTTGATTTGCTAATAAG-TATCATCGCCCGCGTCTCGAGATTGGACT 139
Query 101 ACCCGACTCTCTCCT-TAGTCTCCAAGAGCTTCCGCTCCT-TGATTGCTTCACCAGATCT 158
|||| | ||||| || | |||||||||||||| || | || | |||| ||||| || ||
Sbjct 140 ACCCAATTCTCT-CTCTCGTCTCCAAGAGCTTTCGAT-CTCTCCTTGCATCACCGGAGCT 197
Query 159 CTACAAGACTCGATCTCTGTTAGGTCGCACCGAGAGTTGTCTCTATCTGTGCTTA-CG-A 216
||| ||||||| || || ||||| || |||||||| |||||||||||||||||| |
Sbjct 198 TTACGAGACTCGGTCACTCTTAGGACGTACCGAGAGCTGTCTCTATCTGTGCTTAGGGTT 257
Query 217 TACTCTCCTGAA-GATAACCCTCGCTGGTTCACTCTCTGCCGAAAACCTAATCGAAG--- 272
|||| | || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TACT-T-CT-AACTCTAACCCTCGCTGGTTCACTCTCTGCCGAAAACCTAATCGAAACTT 314
Query 273 AACC--CTA-A-GCAAGGAGAAGA--A-TGAGTCAAGTGG-CAATCTTCTGGTTCCGATC 324
|||| | | | | ||| |||||| | | || ||||||| || | || ||| | |||
Sbjct 315 AACCAACAACATG-AAGAAGAAGACGAATAAGCCAAGTGGGCA-TGTTATGGCGGCAATC 372
Query 325 CCAAT-CATCAACTCTCCTCCTCTGGAATGGTCTAG-CATCGTCGCTGTTGGTTCACATC 382
||||| | ||| ||||||||| | | | ||| | | | || | |||||||| ||
Sbjct 373 CCAATGCC-CAATTCTCCTCCTGTACACCGCTCTGGTC-TGGTTACGGTTGGTTCTGATA 430
Query 383 TCTACGCCATTAAC-GGACC-T-ATCGAAGATGCTCCA-TGCTCTAACGTCTCC-TTCCT 437
| ||| |||| | || || | ||| || || ||| | ||||| |||||| || |
Sbjct 431 TTTACAACATTGGCTGGTCCATCATC-AA--TGA-CCACTCCTCTAGCGTCTCGATT--T 484
Query 438 TG-ACTGTCGATCTCACACTTGGCTCGAAGCTCCAAGCATGC 478
|| ||||||| |||||||| |||| ||||||||||| |||||
Sbjct 485 TGGACTGTCGGTCTCACACGTGGCGCGAAGCTCCAAACATGC 526
> Ahg949864 jgi|Araly1|949864|scaffold_801751.1
Length=1383
Score = 110 bits (59), Expect = 3e-23
Identities = 205/274 (75%), Gaps = 15/274 (5%)
Strand=Plus/Plus
Query 24 AGAAATAGCGACCT-CGAATCCTTCACTTCCAGAAGATTTGGTAGTGAGC-TGCTTAGCT 81
||||| ||| | || | ||||| |||||||| || |||||| || ||||| | ||| ||
Sbjct 225 AGAAAAAGCCATCTCCAAATCCATCACTTCCCGATGATTTGCTAATGAGCAT-CTTCGCA 283
Query 82 CGTGTGTCGAGATTGTATTACCCGACTCTCTCCTTAGTCTCCAAGAGCTTCCGCTC-CTT 140
||||| || |||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 284 CGTGTCTCAAGATTGTACTACCCGACTCTCTCCTTAGTCTCCAAGAGCTTTCGATCTCTC 343
Query 141 GATTGCTTCACCAGATCTCTACAAGACTCGATCTCTGTTAGGTCGCACCGAGAGTTGT-- 198
| ||||||| || || || ||| |||| || || | || | | |||| |||||
Sbjct 344 C-TAACTTCACCGGAGCTTTATAAGGCTCGGTCACTCTCGGGCCAAAACGAGTGTTGTTG 402
Query 199 -CTCTATCT-GTGCTTACGATACTCTCCTGAAGATAAC-CCTCGCTGGTTCACTCTCTGC 255
||||| || ||| ||||| | | ||| | || || | ||||||||| |||||
Sbjct 403 TCTCTA-CTTGTGTTTACGGTTCAAGCCTTATTCGAATTCCAC-CTGGTTCACCCTCTGT 460
Query 256 CGAAAACCTAATCGAAGAACCCTAAGCAAGGAGA 289
|| |||||| ||| || | |||||| ||| ||||
Sbjct 461 CGGAAACCTGATC-AA-A-CCCTAACCAATGAGA 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5