BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39600.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg330592 jgi|Araly1|330592|fgenesh1_pm.C_scaffold_7002819 545 2e-154 Ahg327908 jgi|Araly1|327908|fgenesh1_pm.C_scaffold_7000135 156 4e-37 Ahg949864 jgi|Araly1|949864|scaffold_801751.1 110 3e-23 > Ahg330592 jgi|Araly1|330592|fgenesh1_pm.C_scaffold_7002819 Length=1035 Score = 545 bits (295), Expect = 2e-154 Identities = 656/821 (80%), Gaps = 62/821 (8%) Strand=Plus/Plus Query 309 TCTTCTGGTTCCGATCCCAATCATCAACTCTCCTCCTCTGGAATGGTCTAGCATCGTCGC 368 ||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||| | Sbjct 252 TCTTCTGGTTCCGATCCCAATCATCAACTCTCCACCTGTGGAATGGTCTAATATTGTCTC 311 Query 369 TGTTGGTTC-ACATCTCTACGCCATTAACGGACCTATCGAAGATGCTCCATGCTCTAACG 427 ||||| ||| | |||||||||||||| | | | | || | | | | || || | Sbjct 312 TGTTGATTCTA-ATCTCTACGCCATT-A--G--CGA-CG-A-A-G-T---TG--CT---G 352 Query 428 TCTCCTTCCTTGACTGTCGATCTCACACTTGGCTCGAAGCTCCAAGCATGCGAGTGGCTC 487 |||| ||||||||||||||| |||||||||||||||||||||||||| ||||| || || Sbjct 353 TCTCTTTCCTTGACTGTCGAACTCACACTTGGCTCGAAGCTCCAAGCTTGCGATTGACTA 412 Query 488 ACAC-CAATAGCCAA-CTTGATGGGAAGATGTATTTAGCAGGAAGCTCCGAGAATGTAGA 545 |||| ||| || || ||||||||| ||||||||||| ||||||||| || ||| ||| Sbjct 413 ACACTCAA-AG-TAAGCTTGATGGGGAGATGTATTTACCAGGAAGCTGTGAAAATCCAGA 470 Query 546 TTCTTTGAACTGTATTCAAG-TGTTCAGCACAAAGACACAAACTTGGAAGCCTGTGCCGT 604 |||||| ||||||||| ||| || |||||| |||||| ||||||| |||||| || | Sbjct 471 TTCTTTCAACTGTATTGAAGTTG-TCAGCAAAAAGACTCAAACTTTGAAGCCCCAGCGGC 529 Query 605 TCCAAAAGCGGA-TATTCGGAGTCGGAGATCTGGAAGGAAAGATTTATACGATCTGTAGG 663 || |||||| || | || ||||| ||||||| |||||||| |||| | |||| | | Sbjct 530 TCGAAAAGCCGAGT-TTAGGAGTTTTAGATCTGCAAGGAAAGGTTTACATGATC--CACG 586 Query 664 ACA--GAGTGTGG---ACAGGGTGTGACTATAAAGC-CAAAGGATTTAACATGTGACGTG 717 | | |||| ||| | | |||||| | |||| | ||||||||||| || || ||| Sbjct 587 AAATCGAGTCTGGTAAAAAAGGTGTGGTTTTAAA-CTTTAAGGATTTAACTTGGGAAGTG 645 Query 718 GTAGGATTTTGTGGGGAGAAGGATTGGTCTTCTGTTTGTATGATAGGGAACATAGTCTAT 777 |||||||| ||||| | || |||| |||||||| ||||||||| ||||||||||||| Sbjct 646 GTAGGATTAGGTGGGAATAATTTTTGGGCTTCTGTTGGTATGATAGAGAACATAGTCTAT 705 Query 778 T-TT-T-ATAGACCCAATGGGGAGTTTCTATGGATATACTCTGGAAAAGG-GGAA-TCGG 832 | || | ||| || || |||||||||||| ||| |||||| | || |||| |||| || Sbjct 706 TCTTATAATAAACGCAGTGGGGAGTTTCTGTGGTTATACT-TTGACAAGGAGGAAGAAGG 764 Query 833 CTAG-GA-GAAATCTAAAGGGTTTAGAAGGGTTACCTAAGTTTGAT-GAT--TATGCTAG 887 | | || ||||| |||||||||||||||||||||||||||||||| | | || | || Sbjct 765 -T-GCGAGGAAAT-TAAAGGGTTTAGAAGGGTTACCTAAGTTTGATAG-TGGTA-G-TAC 818 Query 888 TGTTAAATTGGTGGATTATGGTGGTAAGTTGATGGTTTTGTGGGA-CACTTATGTCCCTG 946 ||||| ||||||| |||||||||||||| |||||||||||||||| || |||| |||| Sbjct 819 TGTTAGATTGGTGAATTATGGTGGTAAGCTGATGGTTTTGTGGGATCAAA-ATGTTCCTG 877 Query 947 AAAGTGAGTCT-A--AGGAGAAGATGATTTGGTGCGCAGAGATTTCGCTTCaaaaaaaGT 1003 |||||| | | | ||||||||||||||||||| || |||||||||||| | ||| | Sbjct 878 CAAGTGACTTTGAGGAGGAGAAGATGATTTGGTGTGCCGAGATTTCGCTTGACAAAC-G- 935 Query 1004 GCAACAATGAAGAGATTTGGGGGACGGTCGAGTGGTTCGACGCTGTGCTTACAGTCCCTG 1063 | || ||||| ||||||||||| | |||||||||||| || |||||||||||||||||| Sbjct 936 G-AAGAATGATGAGATTTGGGGCAAGGTCGAGTGGTTTGAAGCTGTGCTTACAGTCCCTA 994 Query 1064 AGGATTGTAAATTCGTGCGTGCTATTGCTGCTACTGTTTGA 1104 | | || | |||| ||| ||||||||||||||||||||||| Sbjct 995 AAGCTTATCAATTTGTGTGTGCTATTGCTGCTACTGTTTGA 1035 > Ahg327908 jgi|Araly1|327908|fgenesh1_pm.C_scaffold_7000135 Length=1131 Score = 156 bits (84), Expect = 4e-37 Identities = 343/462 (74%), Gaps = 41/462 (9%) Strand=Plus/Plus Query 42 TCCTTCACTTCCAGAAGATTTGGTAGTGAGCT-GCTTAGCTCGTGTGTCGAGATTGTATT 100 ||| |||||||| | |||||| || | || | | | || || || ||||||||| | | Sbjct 81 TCCATCACTTCCCGTTGATTTGCTAATAAG-TATCATCGCCCGCGTCTCGAGATTGGACT 139 Query 101 ACCCGACTCTCTCCT-TAGTCTCCAAGAGCTTCCGCTCCT-TGATTGCTTCACCAGATCT 158 |||| | ||||| || | |||||||||||||| || | || | |||| ||||| || || Sbjct 140 ACCCAATTCTCT-CTCTCGTCTCCAAGAGCTTTCGAT-CTCTCCTTGCATCACCGGAGCT 197 Query 159 CTACAAGACTCGATCTCTGTTAGGTCGCACCGAGAGTTGTCTCTATCTGTGCTTA-CG-A 216 ||| ||||||| || || ||||| || |||||||| |||||||||||||||||| | Sbjct 198 TTACGAGACTCGGTCACTCTTAGGACGTACCGAGAGCTGTCTCTATCTGTGCTTAGGGTT 257 Query 217 TACTCTCCTGAA-GATAACCCTCGCTGGTTCACTCTCTGCCGAAAACCTAATCGAAG--- 272 |||| | || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 258 TACT-T-CT-AACTCTAACCCTCGCTGGTTCACTCTCTGCCGAAAACCTAATCGAAACTT 314 Query 273 AACC--CTA-A-GCAAGGAGAAGA--A-TGAGTCAAGTGG-CAATCTTCTGGTTCCGATC 324 |||| | | | | ||| |||||| | | || ||||||| || | || ||| | ||| Sbjct 315 AACCAACAACATG-AAGAAGAAGACGAATAAGCCAAGTGGGCA-TGTTATGGCGGCAATC 372 Query 325 CCAAT-CATCAACTCTCCTCCTCTGGAATGGTCTAG-CATCGTCGCTGTTGGTTCACATC 382 ||||| | ||| ||||||||| | | | ||| | | | || | |||||||| || Sbjct 373 CCAATGCC-CAATTCTCCTCCTGTACACCGCTCTGGTC-TGGTTACGGTTGGTTCTGATA 430 Query 383 TCTACGCCATTAAC-GGACC-T-ATCGAAGATGCTCCA-TGCTCTAACGTCTCC-TTCCT 437 | ||| |||| | || || | ||| || || ||| | ||||| |||||| || | Sbjct 431 TTTACAACATTGGCTGGTCCATCATC-AA--TGA-CCACTCCTCTAGCGTCTCGATT--T 484 Query 438 TG-ACTGTCGATCTCACACTTGGCTCGAAGCTCCAAGCATGC 478 || ||||||| |||||||| |||| ||||||||||| ||||| Sbjct 485 TGGACTGTCGGTCTCACACGTGGCGCGAAGCTCCAAACATGC 526 > Ahg949864 jgi|Araly1|949864|scaffold_801751.1 Length=1383 Score = 110 bits (59), Expect = 3e-23 Identities = 205/274 (75%), Gaps = 15/274 (5%) Strand=Plus/Plus Query 24 AGAAATAGCGACCT-CGAATCCTTCACTTCCAGAAGATTTGGTAGTGAGC-TGCTTAGCT 81 ||||| ||| | || | ||||| |||||||| || |||||| || ||||| | ||| || Sbjct 225 AGAAAAAGCCATCTCCAAATCCATCACTTCCCGATGATTTGCTAATGAGCAT-CTTCGCA 283 Query 82 CGTGTGTCGAGATTGTATTACCCGACTCTCTCCTTAGTCTCCAAGAGCTTCCGCTC-CTT 140 ||||| || |||||||| |||||||||||||||||||||||||||||||| || || || Sbjct 284 CGTGTCTCAAGATTGTACTACCCGACTCTCTCCTTAGTCTCCAAGAGCTTTCGATCTCTC 343 Query 141 GATTGCTTCACCAGATCTCTACAAGACTCGATCTCTGTTAGGTCGCACCGAGAGTTGT-- 198 | ||||||| || || || ||| |||| || || | || | | |||| ||||| Sbjct 344 C-TAACTTCACCGGAGCTTTATAAGGCTCGGTCACTCTCGGGCCAAAACGAGTGTTGTTG 402 Query 199 -CTCTATCT-GTGCTTACGATACTCTCCTGAAGATAAC-CCTCGCTGGTTCACTCTCTGC 255 ||||| || ||| ||||| | | ||| | || || | ||||||||| ||||| Sbjct 403 TCTCTA-CTTGTGTTTACGGTTCAAGCCTTATTCGAATTCCAC-CTGGTTCACCCTCTGT 460 Query 256 CGAAAACCTAATCGAAGAACCCTAAGCAAGGAGA 289 || |||||| ||| || | |||||| ||| |||| Sbjct 461 CGGAAACCTGATC-AA-A-CCCTAACCAATGAGA 491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5