BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39610.1 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg490740 jgi|Araly1|490740|fgenesh2_kg.7__173__AT4G39610.1 1537 0.0 > Ahg490740 jgi|Araly1|490740|fgenesh2_kg.7__173__AT4G39610.1 Length=936 Score = 1537 bits (832), Expect = 0.0 Identities = 904/939 (96%), Gaps = 4/939 (0%) Strand=Plus/Plus Query 1 ATCAATTCAATAAGGAGGAGGAATAGAGAGCTaaagaaaaagaaaaaaGACTACATTTCT 60 |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| Sbjct 1 ATCAATTCAATAAGGAGGAGGAATAGAGAGCTAAAG-AAAA-AAAAAAGACTAGATTTCT 58 Query 61 ACAAGGACGTTGGTTCTTTTAGTCGTCGTCGGTCGTCGAAGAAAGATCTTCTCC-TTCTT 119 || ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| Sbjct 59 ACGAGGACGTTGGTTC-TTTAGTCGTCGTCGGTCGTCGAAGAAAGATTTTCTCCTTTCTT 117 Query 120 TCTTCGCCGTACGATCGTCGTCTAATGGGAGAATCATCAAATCCAATGGCTACAAGttct 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TCTTCGCCGTACGATCGTCGTCTAATGGGAGAATCATCAAATCCAATGGCTACAAGTTCT 177 Query 180 tcttcctcctcctcctcaattcctccttcgtctccaacaccctctccGACGTCCACAACC 239 |||||| |||||||||||||||||||||| |||||| |||| ||||||||| |||||||| Sbjct 178 TCTTCCCCCTCCTCCTCAATTCCTCCTTCATCTCCATCACCTTCTCCGACGACCACAACC 237 Query 240 ACTCCGCCACGTCAACATCCTCTCCTCCAGCCACCATCTTCAAAAAAGAAGAAAAACAGA 299 || ||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 238 ACGCCGCCACGTCAGCATCTTCTCCTCCAACCACCATCTTCAAAAAAGAAGAAAAACAGA 297 Query 300 ACAAACGTTTTCAGAGTCTTACGCACCGTGTTTCGATCTTTCCCAATCTTTACAACACCA 359 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 298 ACAAACGTTTTCAGAGTTTTACGCACCGTGTTTCGCTCTTTCCCAATCTTTACAACACCA 357 Query 360 TCCGTAGCATGCAAAATCCCGGTTATACATCCCGGTTTAGGCTTACCGGATCCACATCAC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TCCGTAGCATGCAAAATCCCGGTTATACATCCCGGTTTAGGCTTACCGGATCCACATCAC 417 Query 420 AACACGTCAAGAATCACCGGAACGTTATTCGGATACCGTAAAGGCCGAGTAAGTCTTTCC 479 ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct 418 AACACGTCAAGAATCACCGGAACATTGTTTGGATACCGTAAAGGCCGAGTAAGTCTTTCC 477 Query 480 ATTCAAGAAAACCCTAAATGTTTACCTTCTTTAGTCGTGGAGCTCGCCATGCAAACCACA 539 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 478 ATTCAAGAAAACCCTAAATGTTTACCTTCTTTAGTCGTAGAACTCGCCATGCAAACCACA 537 Query 540 ACGCTTCAAAAAGAGCTAAGCACGGGAATGGTGAGAATAGCTCTCGAGACTGAGAAACAG 599 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 ACCCTTCAAAAAGAGCTAAGCACGGGAATGGTGAGAATAGCTCTCGAGACTGAGAAACAG 597 Query 600 CCTCGAGCTGATAATAACAATTCTAAAACCGAGAAGAAGACAGATATTTTGGAAGAACCG 659 |||||||| |||||||| || || |||||| |||||||| |||||||||||||||||| Sbjct 598 CCTCGAGCAGATAATAATAACAATACAACCGAAAAGAAGACGGATATTTTGGAAGAACCG 657 Query 660 TTATGGACAATGTATTGTAAAGGAGAGAAAACGGGTTACGGTGTGAAACGAGAAGCGACC 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TTATGGACAATGTATTGTAAAGGAGAGAAAACGGGTTACGGTGTGAAACGAGAAGCGACC 717 Query 720 GAAGAAGATCTTAACGTGATGGAGTTGTTACGTCCGGTGTCTATGGGCGCCGGAGTTTTG 779 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 718 GAAGAAGATCTTAACGTGATGGAGTTGTTACGTCCGGTTTCTATGGGAGCCGGAGTTTTA 777 Query 780 CCGGGAAACTCGGAGTCGGAAGGACCCGACGGCGAAATGGCGTATATGAGAGCTTATTTT 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 CCGGGAAACTCGGAGTCGGAAGGACCCGACGGCGAAATGGCGTATATGAGAGCTTATTTT 837 Query 840 GAGAGAGTTATTGGGTCTAAAGATTCAGAGACTTTTTATATGTTGAGTCCTGAAGGGAAT 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GAGAGAGTTATTGGGTCTAAAGATTCAGAGACTTTTTATATGTTGAGTCCTGAAGGGAAT 897 Query 900 AATGGACCCGAACTTAGCTTTTTCTTTGTGAGAGTTTGA 938 ||||||||||||||||||||||||||||||||||||||| Sbjct 898 AATGGACCCGAACTTAGCTTTTTCTTTGTGAGAGTTTGA 936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5