BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39610.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490740 jgi|Araly1|490740|fgenesh2_kg.7__173__AT4G39610.1 1537 0.0
> Ahg490740 jgi|Araly1|490740|fgenesh2_kg.7__173__AT4G39610.1
Length=936
Score = 1537 bits (832), Expect = 0.0
Identities = 904/939 (96%), Gaps = 4/939 (0%)
Strand=Plus/Plus
Query 1 ATCAATTCAATAAGGAGGAGGAATAGAGAGCTaaagaaaaagaaaaaaGACTACATTTCT 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1 ATCAATTCAATAAGGAGGAGGAATAGAGAGCTAAAG-AAAA-AAAAAAGACTAGATTTCT 58
Query 61 ACAAGGACGTTGGTTCTTTTAGTCGTCGTCGGTCGTCGAAGAAAGATCTTCTCC-TTCTT 119
|| ||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 59 ACGAGGACGTTGGTTC-TTTAGTCGTCGTCGGTCGTCGAAGAAAGATTTTCTCCTTTCTT 117
Query 120 TCTTCGCCGTACGATCGTCGTCTAATGGGAGAATCATCAAATCCAATGGCTACAAGttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTTCGCCGTACGATCGTCGTCTAATGGGAGAATCATCAAATCCAATGGCTACAAGTTCT 177
Query 180 tcttcctcctcctcctcaattcctccttcgtctccaacaccctctccGACGTCCACAACC 239
|||||| |||||||||||||||||||||| |||||| |||| ||||||||| ||||||||
Sbjct 178 TCTTCCCCCTCCTCCTCAATTCCTCCTTCATCTCCATCACCTTCTCCGACGACCACAACC 237
Query 240 ACTCCGCCACGTCAACATCCTCTCCTCCAGCCACCATCTTCAAAAAAGAAGAAAAACAGA 299
|| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 ACGCCGCCACGTCAGCATCTTCTCCTCCAACCACCATCTTCAAAAAAGAAGAAAAACAGA 297
Query 300 ACAAACGTTTTCAGAGTCTTACGCACCGTGTTTCGATCTTTCCCAATCTTTACAACACCA 359
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 ACAAACGTTTTCAGAGTTTTACGCACCGTGTTTCGCTCTTTCCCAATCTTTACAACACCA 357
Query 360 TCCGTAGCATGCAAAATCCCGGTTATACATCCCGGTTTAGGCTTACCGGATCCACATCAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCCGTAGCATGCAAAATCCCGGTTATACATCCCGGTTTAGGCTTACCGGATCCACATCAC 417
Query 420 AACACGTCAAGAATCACCGGAACGTTATTCGGATACCGTAAAGGCCGAGTAAGTCTTTCC 479
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 418 AACACGTCAAGAATCACCGGAACATTGTTTGGATACCGTAAAGGCCGAGTAAGTCTTTCC 477
Query 480 ATTCAAGAAAACCCTAAATGTTTACCTTCTTTAGTCGTGGAGCTCGCCATGCAAACCACA 539
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 478 ATTCAAGAAAACCCTAAATGTTTACCTTCTTTAGTCGTAGAACTCGCCATGCAAACCACA 537
Query 540 ACGCTTCAAAAAGAGCTAAGCACGGGAATGGTGAGAATAGCTCTCGAGACTGAGAAACAG 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACCCTTCAAAAAGAGCTAAGCACGGGAATGGTGAGAATAGCTCTCGAGACTGAGAAACAG 597
Query 600 CCTCGAGCTGATAATAACAATTCTAAAACCGAGAAGAAGACAGATATTTTGGAAGAACCG 659
|||||||| |||||||| || || |||||| |||||||| ||||||||||||||||||
Sbjct 598 CCTCGAGCAGATAATAATAACAATACAACCGAAAAGAAGACGGATATTTTGGAAGAACCG 657
Query 660 TTATGGACAATGTATTGTAAAGGAGAGAAAACGGGTTACGGTGTGAAACGAGAAGCGACC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTATGGACAATGTATTGTAAAGGAGAGAAAACGGGTTACGGTGTGAAACGAGAAGCGACC 717
Query 720 GAAGAAGATCTTAACGTGATGGAGTTGTTACGTCCGGTGTCTATGGGCGCCGGAGTTTTG 779
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 718 GAAGAAGATCTTAACGTGATGGAGTTGTTACGTCCGGTTTCTATGGGAGCCGGAGTTTTA 777
Query 780 CCGGGAAACTCGGAGTCGGAAGGACCCGACGGCGAAATGGCGTATATGAGAGCTTATTTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CCGGGAAACTCGGAGTCGGAAGGACCCGACGGCGAAATGGCGTATATGAGAGCTTATTTT 837
Query 840 GAGAGAGTTATTGGGTCTAAAGATTCAGAGACTTTTTATATGTTGAGTCCTGAAGGGAAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAGAGAGTTATTGGGTCTAAAGATTCAGAGACTTTTTATATGTTGAGTCCTGAAGGGAAT 897
Query 900 AATGGACCCGAACTTAGCTTTTTCTTTGTGAGAGTTTGA 938
|||||||||||||||||||||||||||||||||||||||
Sbjct 898 AATGGACCCGAACTTAGCTTTTTCTTTGTGAGAGTTTGA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5