BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39620.1
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490741 jgi|Araly1|490741|fgenesh2_kg.7__174__AT4G39620.1 2233 0.0
> Ahg490741 jgi|Araly1|490741|fgenesh2_kg.7__174__AT4G39620.1
Length=1686
Score = 2233 bits (1209), Expect = 0.0
Identities = 1301/1347 (97%), Gaps = 0/1347 (0%)
Strand=Plus/Plus
Query 1 ATGGACTACTTGTTGACATCACCTTCGTCACTGAGATTCTCCGATTTCATCTCTTCGATT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGACTACTTGTTGACATCACCTTCGTCACTGAGATTCTCCGATTTCATCTCTTCCTTT 60
Query 61 CCCAAAGAAACCGATCACAAATGGCTTCGCTTCTCAGTAAATCTCGGCGATGCGAGGAGG 120
||| |||||||||| ||||||||||||||||| ||| | |||||||||| | ||||||||
Sbjct 61 CCCCAAGAAACCGACCACAAATGGCTTCGCTTGTCAATGAATCTCGGCGTTACGAGGAGG 120
Query 121 TCGACGAGGACGAGGATAACTTGCGGTGCGATTTCGTCAAGGAGGAAACTTGCTgagaga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGACGAAGACGAGGATAACTTGCGGTGCGATTTCGTCAAGGAGGAAACTTGCTGAGAGA 180
Query 181 gagagtgcggagagagaAAATAGAGTGCTGGTTCGGAGTCTTATGTCGAGGATTAGTGAC 240
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GAGAGTGCGGAGAGAGAGAATAGAGTGCTGGTTCGGAGTCTCATGTCGAGGATTAGTGAC 240
Query 241 AGAGAGCCATTGGTGAAGACGCTTGATAAGTACGTGAAGGTCGTAAGATGTGACCATTGT 300
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AAAGAACCATTGGTGAAGACGCTTGATAAGTACGTTAAGGTCGTAAGATGTGACCATTGT 300
Query 301 TTCTTACTCTTTGAAGAGCTTGGTAAAAGCGATAAATGGCTACAATGTCTCGAGGTGTTC 360
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 301 TTCTTACTCTTTGAAGAGCTTGGGAAAAGCGATAAGTGGCTACAATGCCTCGAGGTGTTC 360
Query 361 AGGTGGATGCAGAAACAGCGGTGGTATATCCCAGATAATGGAGTCTACTCGAAATTGATA 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AGGTGGATGCAGAAACAGCGGTGGTATATCCCAGATAATGGAGTTTACTCGAAATTGATA 420
Query 421 TCTGTAATGGGGAAAAAGGGTCAGACCCGTATGGCAATGTGGTTGTTTTCCGAGATGAAA 480
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 421 TCCGTAATGGGGAAAAAGGGTCAAACCCGGATGGCAATGTGGTTGTTTTCCGAGATGAAA 480
Query 481 AACAGTGGGTGTCGTCCTGATGCTTCTGTTTACAACGCTCTCATAACGGCTCATCTTCAT 540
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 481 AACAGTGGGTGTCGTCCTGATGCTTCTGTTTATAATGCCCTCATAACGGCTCATCTTCAT 540
Query 541 ACACGAGACAAGGCAAAAGCTTTAGAGAAAGTTCGTGGATACTTGGACAAAATGAAAGGG 600
||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 541 ACACGGGACAAGGCAAAAGCTTTGGAGAAAGTCCGTGGATACTTTGACAAAATGAAAGGG 600
Query 601 ATTGAGCGGTGTCAACCCAATGTTGTGACTTATAATATCCTGTTGAGGGCTTTTGCTCAA 660
|| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 ATGGAACGGTGTCAACCCAATGTTGTGACTTATAATATCTTGTTGAGGGCTTTTGCTCAA 660
Query 661 TCTGGTAAAGTGGACCAAGTCAATGCTTTGTTTAAGGACTTGGATATGAGTCCAGTTTCT 720
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCCGGTAAAGTGGACCAAGTTAATGCTTTGTTTAAGGACTTGGATATGAGTCCAGTTTCT 720
Query 721 CCAGACGTCTACACCTTCAACGGTGTTATGGATGCGTATGGGAAAAACGGGATGATTAAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCAGACGTCTACACCTTCAACGGTGTTATGGATGCGTATGGGAAAAACGGGATGATTAAG 780
Query 781 GAGATGGAAGCTGTGCTTACTCGTATGAGGAGTAACGAGTGTAAGCCAGACATCATCACC 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GAGATGGAAGCTGTGCTTACTCGTATGAGGAGTAACGAGTGTAAGCCAGATATCATCACC 840
Query 841 TTTAATGTGCTTATTGACTCGTATGGTAAGAAGCAAGAGTTTGAGAAGATGGAGCAGACT 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TTTAATGTGCTTATTGACTCGTATGGTAAGAAGCAAGAGTTTGAAAAGATGGAGCAGACT 900
Query 901 TTCAAGAGTTTAATGCGGTCCAAGGAGAAGCCAACTCTGCCTACATTCAATTCAATGATT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTCAAGAGTTTAATGCGGTCCAAGGAGAAGCCAACTCTGCCTACATTCAATTCAATGATT 960
Query 961 ATAAATTACGGGAAAGCTCGTATGATAGATAAGGCGGAATGGGTTTTCAAAAAGATGAAT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 ATAAATTACGGGAAAGCTCGTATGATAGATAAGGCGGAATGGGTTTTCAAGAAGATGAAT 1020
Query 1021 GATATGAACTACATACCAAGTTTTATCACATATGAGTGCATGATCATGATGTACGGTTAC 1080
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATATGAACTACATGCCAAGTTTTATCACATATGAGTGCATGATCATGATGTACGGTTAC 1080
Query 1081 TGTGGCTCTGTTTCCAGAGCTAGGGAAATATTTGAGGAGGTTGGTGAATCTGATAGGGTG 1140
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1081 TGTGGCTCTGTTTCCAGAGCTAGGGAAATATTTGAGGAGGTTGTTGAATCTGAGAGGGTG 1140
Query 1141 TTGAAGGCGTCAACACTTAATGCCATGCTTGAAGTTTACTGTCGTAATGGTCTATACATT 1200
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1141 TTGAAGGCGTCAACACTCAATGCCATGCTTGAAGTTTACTGTCGTAATGGTCTTTACACG 1200
Query 1201 GAAGCAGATAAGCTTTTCCATAACGCAAGTGCTTTTCGGGTTCATCCAGATGCATCGACG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAAGCAGATAAGCTTTTCCATAACGCAAGTGCTTTTCGGGTTCATCCAGATGCATCGACG 1260
Query 1261 TATAAGTTTCTATATAAGGCATATACCAAGGCAGATATGAAGGAGCAGGTCCAGATACTG 1320
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1261 TATAAGTTTCTATATAAGGCATACACCAAGGCAGATATGAAGGAGCATGTCCAGATACTG 1320
Query 1321 ATGAAGAAAATGGAGAAAGATGGAATT 1347
|||||||||||||||||||||||||||
Sbjct 1321 ATGAAGAAAATGGAGAAAGATGGAATT 1347
Score = 233 bits (126), Expect = 3e-60
Identities = 147/157 (94%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 1537 TGCAGAAAGAACTATTTGGAGAACTTGAGTGGACATGATAAAGGTTCCAGGGATGAATCA 1596
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1531 TGCAGAAAGAACTATTTGGAGAACTTGAGTGGACATGATAAAGTTTCCAGGGATGAATTA 1590
Query 1597 AGAAAGCCTAGTCAAGAAAAGCAGCCACTATTTGCTTCAGATCAAAATAATATGATGATC 1656
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1591 AGAAAGCGTAGTCAAGAAAAGCAGCCACTATTTGCTTCAGTTCAAAATAATATGAT-ATC 1649
Query 1657 AAAGAGAAGAAAGAA-CTATTCACTAGAGTCTTGTAA 1692
|||||||| ||| || |||||||||||| |||||||
Sbjct 1650 AAAGAGAAAAAAAAAACTATTCACTAGAAACTTGTAA 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63458348170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5