BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39630.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943955 jgi|Araly1|943955|scaffold_700184.1 1122 0.0
> Ahg943955 jgi|Araly1|943955|scaffold_700184.1
Length=742
Score = 1122 bits (607), Expect = 0.0
Identities = 699/743 (94%), Gaps = 8/743 (1%)
Strand=Plus/Plus
Query 108 TTCGAAAGAAATCGATAATGCCGAAGCGAAAAGCAAAGGAGTGTGTCAAACTCACTgaag 167
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4 TTCGGAAGAAATCGATAATGCCGAAGCGAAAAGCAAAGGAGTGTGTCAAACTCACCGAAG 63
Query 168 aagataggaacgacgagaaacgaattcgaatcgaagagaagaaagaagacttcgtcgacg 227
|||||| |||||| || || |||||||||| ||||||||||||||||||||||||||||
Sbjct 64 AAGATAAGAACGATGACAAGCGAATTCGAAGAGAAGAGAAGAAAGAAGACTTCGTCGACG 123
Query 228 aagaagtcgaaagacAAATTGCTGCGATTAGAGCAATCCGTGATGTTGAGATTGAACAAA 287
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AAGAAGTTGAAAGACAAATTGCTGCGATTAGAGCAATCCGTGATGTTGAGATTGAACAAA 183
Query 288 TGT-TAACTGCATTGCGGTTGCTTCGTTCGTATTTTACTGAGGAACAGCTAC-ACACTCC 345
| ||||||||||| |||||||||| || ||||||||||||||||||| | |||||||
Sbjct 184 -CTCTAACTGCATTGAGGTTGCTTCGCTCAAATTTTACTGAGGAACAGCT-CGACACTCC 241
Query 346 TGTGTTAGACTTCTTTAAAGAGAATCTTCCGGATTTATCGATATCGAGAAACGAAGAAAC 405
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 242 TGTGTTAGACTTCTTTAAAGAGAACCTTCCGGATTTGTCGATATCGAGAAACGAAGAAAC 301
Query 406 TGGGGAGATTGAGTTAAAGTGGAGAGACGAAAATGGTGATTCGTTTGCTGGAAATGAGAA 465
||||||||||||||||||||||| ||| |||||||||||||| || || ||||||| |||
Sbjct 302 TGGGGAGATTGAGTTAAAGTGGAAAGATGAAAATGGTGATTCATTCGCAGGAAATGCGAA 361
Query 466 TGGCGTTGACATGAATTATTCTATTTTGAAA-CGCTTGTCGATGCGTTTTACC-GATTTA 523
||||||||||||||||||||||||||| ||| |||||||||||||||||| || ||||||
Sbjct 362 TGGCGTTGACATGAATTATTCTATTTT-AAAGCGCTTGTCGATGCGTTTT-CCTGATTTA 419
Query 524 TACAGTAGGTCATCTCTTGGTGGCTATGATTTACCTGACAACGTGAAAGCTAACCTGTTA 583
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 420 TATAGTAGATCATCTCTTGGTGGCTATGATTTACCTGATAACGTGAAAGCAAACCTGTTA 479
Query 584 GGAACTGATAACCCACAGCTCGATAATCTTGTCTTTCAGGGGACATCTGAGAACCAAATG 643
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAACTGATAACCCACTGCTCGATAATCTTGTCTTTCAGGGGACATCTGAGAACCAAATG 539
Query 644 CTTCCAGGCCATGATGCTTTTCAGACTCCTGGGGTTAATGGGCAAAGACTTTCTTTTGGA 703
||| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 540 CTTGCAAGCCATGATGCTTTTCAGACTCCTGGGGTGAATGGGCAAAGACTCTCTTTTGGA 599
Query 704 ATGACTCCAAAGACTCTGAGGCTACCAAAAGCTGGAGAGATGATGCTCTCTGTGCATGGC 763
||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 ATGACACCAAAGACTCGGAGGCTACCAAAACCTGGAGAGATGATGCTCTCTGTGCATGGC 659
Query 764 TCTCCTTTGGGGGTCTACAAAGAAGACCACAACATGGGAGCAATAAATGAGGAAAACAGT 823
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TCTCCTTTGGGGGTCTACAAAGAAGACCACAACATGGGAGCTATAAATGAGGAAAACAGT 719
Query 824 TGAAAAGCTTCAACGATTCAGAC 846
||||||||||||| |||||||||
Sbjct 720 TGAAAAGCTTCAAAGATTCAGAC 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5