BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39640.1
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490743 jgi|Araly1|490743|fgenesh2_kg.7__176__AT4G39640.1 2948 0.0
Ahg888185 jgi|Araly1|888185|Al_scaffold_0007_171 1857 0.0
Ahg908566 jgi|Araly1|908566|Al_scaffold_0002_1647 507 2e-142
> Ahg490743 jgi|Araly1|490743|fgenesh2_kg.7__176__AT4G39640.1
Length=1914
Score = 2948 bits (1596), Expect = 0.0
Identities = 1803/1903 (95%), Gaps = 14/1903 (1%)
Strand=Plus/Plus
Query 3 TAATTAAATGACTTGGCCTCAACGTATACATCATAGTTTTATATCTCAT-CTCTACCTTC 61
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1 TAATTAAATGACTTGGCCGCAACGTATACATCATAG-TTTATATCTCATCCTCTACCTTC 59
Query 62 CATAG-AAACTCATTTGAAACTTTTGGGCAGAGAGTCTGAACAATCGCTTTGTTGTCGTC 120
||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct 60 CATAGAAAACTCAATTGAAACTTTTGGGC--AGAGTCTGAACAATCTCTTTGTTGTCGCC 117
Query 121 AAGAACGATACGTCCCTATAAATTAGCAATGTCGCTGGTTCGAACAGTGACGATCGTTCT 180
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 118 AAGAACGAGACGTCCCTATAAATTAGCAATGTCGCTAGTTCGAACAGTGACGATCGTTCT 177
Query 181 TTTTATAATCGCGTTTCTGCAAAACGCTGCGGCTCAGAAAAGACAGCAAAGTATTGTTAA 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 TTTTATAATCGCGTTTCTGCAAAACGCTGCGGCTCAGAAAAGACAGCAGAGTATTGTTAA 237
Query 241 GTCTCGCGGTGCGGTTGCGACAGATGATGGACGGTGTTCTGTTATCGGGATGCGTGTTCT 300
||| |||||||||||||| || |||||||||||||||||||| ||||||||| ||||||
Sbjct 238 GTCCCGCGGTGCGGTTGCAACGGATGATGGACGGTGTTCTGTAATCGGGATGAATGTTCT 297
Query 301 TCGTGAAGGAGGAAACGCGATTGATGCGTCTGTGGCTGCTGCTCTGTGTTTGGGCGTTGT 360
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 298 TCGTGAAGGAGGAAACGCGATTGATGCGTCGGTGGCTGCTGCTCTTTGTTTGGGAGTTGT 357
Query 361 AAGTCCCGCGTCTAGCGGTATAGGCGGTGGAGCGTTTACAGTGGTTAAGATAGCTGGTGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CAGTCCCGCGTCTAGCGGTATAGGCGGTGGAGCGTTTACAGTGGTTAAGATAGCTGGTGG 417
Query 421 GAAAGAAATTGCTTATGATTCTAGAGAAACCGCTCCTCTAAGAGCCACTGAGAATATGTA 480
||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 418 GAAAGAAATCGCTTATGATTCTAGAGAAACCGCTCCTTTAAGCGCCACTGAGAATATGTA 477
Query 481 TGGAGGTAATGTTGACCTAAAGAAGAAAGGAGCCTTATCAGTAGGCGTTCCCGGGGAAGT 540
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 478 TGGAGGTAATGTTGAGCTAAAGAAGAAAGGAGCCTTATCAGTAGGCGTTCCTGGGGAAGT 537
Query 541 TGCAGGTCTATTCACGGCTTGGAAACAACATGGGAAGCTACCGTGGAAGCGGTTAGTGAC 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 CGCAGGTCTATTCACGGCTTGGAAACAACACGGGAAGCTACCGTGGAAGCGGTTAGTGAG 597
Query 601 TCCTGCAGAGAAACTTGCAGAGGGATTCAAGATTTCCAAGTATCTTTATATGCAGATGAA 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 598 TCCTGCAGAGAAACTTGCAGAGGGATTCAAGATTTCAAAGTATCTTTATATGCAGATGAA 657
Query 661 CGCGACTAGAAGCGATATCTTAGCAGACAAAGGTCTCTCTGACCTATTTGTTTCAAATGG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 TGCGACTAGAAGCGATATCTTAGCAGACAAAGGTCTCTCTGACCTATTTGTTTTAAATGG 717
Query 721 AGAGCTCAAGAAACCAGGGACGATTTGCCATAACCCAAAATTGGCTTTAACCTTGAA-GC 779
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 718 AGAGCTCAAGAAACCAGGGACGATTTGCCATAACCCAAACTTGGCTTTAACCTT-AAGGC 776
Query 780 TAATTGGAGAGTACGGTCCAAAAGCATTTTACAATGGCACAGTTGGGGTTAACCTAGCGA 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 777 TAATTGGAGAGTACGGTCCAAAAGCATTTTACAATGGCACTGTTGGGGTTAACCTAGCGA 836
Query 840 GAGATATCAAAAAATCTGGAGGAATAATAACTTTGAAAGATCTGCAAAGTTATAGAGTTA 899
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 837 GAGATATCCTTAAATCTGGAGGGATAATAACTTTGAAAGATCTGCAAAGTTATAGAGTTA 896
Query 900 AGATTAAAGAACCGTTGTCTGCAGACATTCTTGGATATAGAGTCCTTGGTATGCCTCCTC 959
||||||| ||||||||| | |||||||||||||||||| |||| ||||||||||||||||
Sbjct 897 AGATTAACGAACCGTTGGCCGCAGACATTCTTGGATATCGAGTACTTGGTATGCCTCCTC 956
Query 960 CTTCATCTGGTGGCGCTGCAATGATGCTTGTTTTGAACATTCTTTCTCAATATGGGATTC 1019
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 957 CTTCATCCGGTGGCGCTGCAATGATGCTTGTTTTGAACATTCTTTCCCAATATGGGATTC 1016
Query 1020 CATCAGGTGTTTCAGGCCCTCTCGGTGTTCATCGACTAATCGAGGCTCTGAAACATGCAT 1079
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1017 CATCAGGTGTTTCAGGCCCTCTCGGTGTTCATCGACTAATCGAAGCTCTGAAACATGCGT 1076
Query 1080 TCGCAGTTAGAATGAACCTCGGGGATCCAGATTTCACTGATGTTACCAAGGTTGTTTCGG 1139
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1077 TCGCAGTTAGAATGAACCTCGGAGATCCGGATTTCACTGATGTTACCAAGGTTGTTTCGG 1136
Query 1140 ATATGTTGTCGCCAAAGTTTGCAAAAGACTTGAAGAGCAAGATAAACGACCAAAAAACTT 1199
||||| |||| |||||||||||| ||||||||||||| |||||||| ||| ||||||| |
Sbjct 1137 ATATGCTGTCTCCAAAGTTTGCAGAAGACTTGAAGAGAAAGATAAAGGACGAAAAAACCT 1196
Query 1200 TTGATCCAAAATATTACGGGGGCATGTGGAATCAGATCGACGACCACGGGACAAGTCATT 1259
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTGATCCAAAATATTACGGCGGCATGTGGAATCAGATCGACGACCACGGGACAAGTCATT 1256
Query 1260 TATCGATCATAGACCGCGAGAGGAACGCTGTGTCTATGACTAGTACAATAAATGGTTACT 1319
||||||||||||| ||||||||||| || || || ||||||||||| |||||||| ||||
Sbjct 1257 TATCGATCATAGATCGCGAGAGGAATGCAGTTTCAATGACTAGTACTATAAATGGCTACT 1316
Query 1320 TTGGGGCATTGATGCTATCTCCGAGCACAGGAATAGTTCTGAACAACGAAATGGACGATT 1379
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1317 TTGGGGCATTGATGCTATCTCCTAGCACAGGAATAGTTCTGAACAACGAAATGGACGATT 1376
Query 1380 TCTCAATCCCTATGAAATCTAACGGTAACTTAGATGTTCCACCACCAGCACCAGCTAACT 1439
|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1377 TCTCAATCCCGATGAAATTTAACGGTAACTTAGATGTTCCTCCACCAGCACCAGCTAACT 1436
Query 1440 TCATCCGTCCTGGAAAACGACCTTTGTCCTCTATGTCACCCACCATTGTACTCAAGGACG 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1437 TCATCCGTCCTGGAAAACGACCTTTGTCCTCTATGTCACCCACCATTGTACTCAAGGATG 1496
Query 1500 GTAAAGTGAAAGCCGCTGTGGGTGCGAGCGGAGGAGCCAACATTATTGCCGGGACAACGG 1559
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1497 GTAAAGTGAAAGCCGCGGTGGGAGCGAGCGGAGGAGCCAACATTATTGCTGGGACAACGG 1556
Query 1560 AAGTTTACTTGAATCATTTTTTCCTCAAGATGGATCCTCTTTCTTCCGTCTTAGCTCCAA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AAGTTTACTTGAATCATTTTTTCCTCAAGATGGATCCTCTTTCTTCCGTCTTAGCTCCAA 1616
Query 1620 GAATCTACCATCAGCTGATACCAAACAGAGCT-TCGTACGAGAACTGGACAACAGTATTC 1678
|||||||||||||||||||||||||||||| | |||| ||||| ||||| |||||||||
Sbjct 1617 GAATCTACCATCAGCTGATACCAAACAGAG-TATCGTTTGAGAATTGGACCACAGTATTC 1675
Query 1679 AATGATCATTTCGAGATTCCTAAAGCAACAAGAGTTGTGTTGGAGAAGAAAGGTCATGTC 1738
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1676 AATGATCATTTCGAGATTCCTAAAGCGACAAGAGTTGTGTTGGAGAAGAAAGGTCATGTC 1735
Query 1739 CTATCTCCTATTGCCGGAGGGACGATTGCTCAGTTCATAGTTCAAGAATCCGGTGAGAAC 1798
||||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1736 CTATCGCCCATCGCCGGAGGGACGATTGCTCAGTTCATAGTTCAAGAATCCGGTGGGAAC 1795
Query 1799 TCCGGTGGAAGAAGTGAGCTTGTGGCAGTTAGTGATCCTCGAAAAGGAGGGTTCCCTTCA 1858
||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 1796 TCCGGCGGAAGGAGTGAGCTTGTGGCAGTAAGTGATCCTAGAAAAGGAGGGTTCCCGTCA 1855
Query 1859 GGATATTGAGAATTTTAGATCGAGattt--attttatgttttt 1899
||||| ||||||| | | ||| | |||| ||||||| |||||
Sbjct 1856 GGATACTGAGAATAT-ATATCAA-ATTTTTATTTTAT-TTTTT 1895
> Ahg888185 jgi|Araly1|888185|Al_scaffold_0007_171
Length=1737
Score = 1857 bits (1005), Expect = 0.0
Identities = 1513/1754 (86%), Gaps = 52/1754 (3%)
Strand=Plus/Plus
Query 143 TTAGCAATGTC-GCTGGTTCGAACAGTGACGATCGTTCTTTTTATAATCGCGTTTCTGCA 201
||||||||| | ||| ||||| || | |||| ||| |||| || ||||||||||||||||
Sbjct 7 TTAGCAATG-CTGCTTGTTCGTACTGCGACGGTCGCTCTTCTTCTAATCGCGTTTCTGCA 65
Query 202 AAACGCTGCGGCTCAGAAAAGA-CAGCAAAGTATTGTTAAGTCTCGCGGTGCGGTTGCGA 260
||||||| ||| |||||| | ||||||||||||||| || || ||||||||||||||
Sbjct 66 AAACGCTAATGCTGAGAAAA-ATCAGCAAAGTATTGTTGCGTATCACGGTGCGGTTGCGA 124
Query 261 CAGATGATGGACGGTGTTCTGTTATCGGGATGCGTGTTCTTCGTGAAGGAGGAAACGCGA 320
| || ||||| |||||||||| ||||||| | |||||||||| |||||||||||||||
Sbjct 125 CGGACGATGGGCGGTGTTCTGAAATCGGGACGAATGTTCTTCGTCAAGGAGGAAACGCGA 184
Query 321 TTGATGCGTCTGTGGCTGCTGCTCTGTGTTTGGGCGTTGTAAGTCCCGCGTCTAGCGGTA 380
|||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 185 TTGATGCGTCGGTGGCTGCTGCTCTTTGTTTGGGCGTTGTCAGTCCCGCGTCTAGCGGTG 244
Query 381 TAGGCGGTGGAGCGTTTACAGTGGTTAAGA-TAGCTGGTGG-GAAAGAAATTGCTTATGA 438
|||||||||||||||||| ||| | || | | ||| ||| | ||||||| ||||||||
Sbjct 245 TAGGCGGTGGAGCGTTTATAGTAATCAA-ACTCGCTAATGGCG-AAGAAATAGCTTATGA 302
Query 439 TTCTAGAGAAACCGCTCCTCTAAGAGCCACTGAGAATATGTATGGAGGTAATGTTGACCT 498
|||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||| |
Sbjct 303 TTCTAGAGAAACCGCTCCTCTAAGCGCCTCTGAGAATATGTATGGTGGTAATCCTGAGCA 362
Query 499 AAAGAAGAAAGGAGCCTTATCAGTAGGCGTTCCCGGGGAAGTTGCAGGTCTATTCACGGC 558
|||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||
Sbjct 363 AAAGAAGAAAGGAGCCTTATCAGTAGCCGTTCCCGGGGAAGTCGCTGGTCTATTCACGGC 422
Query 559 TTGGA-AACAACATGGGAAGCTACCGTGGAAGCGGTTAGT-G-ACTCCTGCAGAGAAACT 615
||||| || |||| |||||| |||| ||||||| |||||| | || || |||||||||||
Sbjct 423 TTGGACAA-AACACGGGAAGTTACCATGGAAGCAGTTAGTGGAAC-CC-GCAGAGAAACT 479
Query 616 TGCA---GAGGGATTCAAGATTTCCAAGTATCTTTATATGCAGATGAACGCGACTAGAAG 672
|||| || || ||| ||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 480 TGCAGCTGAAGGTTTCGAGATTTCAAAATATCTCTATATGCAGATGAACGCGACTAGAAG 539
Query 673 CGATATCTTAGCAGACAAAGGTCTCTCTGACCTATTTGTTTCAAATGGAGAGCTCAAGAA 732
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 540 CGATATCTTAGCAGACAAAGGTCTCTCTGAGCTTTTTGTTTCAAATGGAGAGCTCAAGAA 599
Query 733 ACCAGGGACGATTTGCCATAACCCAAAATTGGCTTTAAC-CTTGAAGCTAATTGGA-GAG 790
|||||||||||||| ||| ||||||||||||||||| || || |||| || | | ||
Sbjct 600 ACCAGGGACGATTTTCCAGAACCCAAAATTGGCTTTTACACT--AAGCCAAATCGCTGAA 657
Query 791 TACGGTCCAAAAGCATTTTACAATGGCACAGTTGGGGTTAACCTAGCGAGAGATAT-CAA 849
|||||||||||||| |||||||||||||| ||||||| |||||||| ||| ||||| |||
Sbjct 658 TACGGTCCAAAAGCGTTTTACAATGGCACGGTTGGGGCTAACCTAGTGAGTGATATACAA 717
Query 850 AAAATCTGGAGGAATAATAACTTTGAAAGATCTGCA-AAGTTATAGA-GTTAAGATTAAA 907
||| || ||||||||||| |||||||||||| |||| || ||| | | |||||| |||||
Sbjct 718 AAA-TCAGGAGGAATAATCACTTTGAAAGATTTGCAGAA-TTACA-ACGTTAAGGTTAAA 774
Query 908 GAACCGTTGTCTGCAGACATTCTTGGATATAGAGTCCTTGGTATGCCTCCTCCTTCATCT 967
||||| || ||||| || ||||||||||| || | || || ||||||||||||||||||
Sbjct 775 GAACCATTATCTGCGGATATTCTTGGATACCGATTACTCGGCATGCCTCCTCCTTCATCT 834
Query 968 GGTGGCGCTGCAATGATGCTTGTTTTGAACATTCTTTCTCAATATGGGATTCCATCA-GG 1026
|||||| |||||||||||||| |||||||||||||| |||||||||| ||||||| | ||
Sbjct 835 GGTGGCCCTGCAATGATGCTTATTTTGAACATTCTTGCTCAATATGGTATTCCAT-ATGG 893
Query 1027 TGTTTCA-GGC-CCTCTCGGTGTTCATCGACTAATCGAGGCTCTGAAACATGCATTCGCA 1084
|||| || ||| || |||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 894 TGTT-CACGGCGCC-CTCGGTGTTCATCGACTAGTTGAGGCTCTCAAACATGCATTCGCG 951
Query 1085 GTTAGAATGAACCTCGGGGATCCAGATTTCA-C--TGATGTTACCAAGGTTGTTTCGGAT 1141
|| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 952 GTAAGAATGAACCTCGGGGATCCAGATTTCGTCCCTGATGTTACCAAGGTTGTTTCAGAT 1011
Query 1142 ATGTTGTCGCCAAAGTTTGCAAAAGACTTGAAGAGCAAGATAAACGACCAAAAAACTTTT 1201
|||||||| ||||||||||| ||||||||||||||||||||||||| | || || |||
Sbjct 1012 ATGTTGTCTCCAAAGTTTGCGCAAGACTTGAAGAGCAAGATAAACGATGAGAAGACCTTT 1071
Query 1202 GATCCAAAATATTACGGGGGCATGTGGAATCAGATCGACGACCACGGGACAAGTCATTTA 1261
| |||||||| |||||| |||| ||||||||||| | || || ||||| || ||||||
Sbjct 1072 GGTCCAAAATTTTACGGTGGCAAATGGAATCAGATAAAGGATCATGGGACGAGCCATTTA 1131
Query 1262 TCGATCATAGAC-CGCGAGAGGAACGCTGTGTCTATGACTAGTACAATAAATGGTTACTT 1320
||||| ||||| || ||||| || ||||| || ||||||| |||||| || || |||||
Sbjct 1132 TCGATAATAGATTCG-GAGAGAAATGCTGTTTCAATGACTACTACAATCAACGGATACTT 1190
Query 1321 TGGGGCATTGATGCTATCTCCGAGCACAGGAATAGTTCTGAACAACGAAATGGACGATTT 1380
||||||| | ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1191 TGGGGCAATAATGCTGTCTCCGAGCACTGGAATTGTTCTAAACAACGAAATGGACGATTT 1250
Query 1381 CTCAATCCCTATGAAATCTA-ACGGTAACTTAGATGTTCCACCACCAGCACCAGCTAACT 1439
||| ||||| |||||||| | ||| | |||||| || ||||| |||||||||||||
Sbjct 1251 CTCGATCCCAATGAAATCCGGA-GGTGGCCCAGATGTGCCGCCACCGGCACCAGCTAACT 1309
Query 1440 TCATCCGTCCTGGAAAACGACCTTTGTCCTCTATGTCACCCACCATTGTACTCAAGGACG 1499
|||||||||| || |||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 1310 TCATCCGTCCGGGGAAACGACCTTTGTCATCTATGACTCCCACCATTGTACTCAAGGACG 1369
Query 1500 GTAAAGTGAAAGCCGCTGTGGGTGCGAGCGGAGGAGCCAACATTATTGCCGGGACAACGG 1559
||||||||||||| || ||||||||||||||||| ||| || ||||| ||||| |
Sbjct 1370 GTAAAGTGAAAGCAGCACTGGGTGCGAGCGGAGGAATGTTCATCATCGCCGGTACAACAG 1429
Query 1560 AAGTTTACTTGAATCATTTTTTCCTCAAGATGGATCCTCTTTCTTCCGTC-TTAGCTCCA 1618
||||||||||||||||||| |||||||| ||||||||||| |||||||| || ||||||
Sbjct 1430 AAGTTTACTTGAATCATTTCTTCCTCAACATGGATCCTCTCTCTTCCGTTGTT-GCTCCA 1488
Query 1619 AGAATCTACCATCAGCTGATACCAAACAGAGCTTCGTACGAGAACTGGACAACAGTAT-T 1677
||||||||||| ||||||||||| |||| ||||||||| ||||| ||||| ||||| | |
Sbjct 1489 AGAATCTACCACCAGCTGATACCGAACAAAGCTTCGTATGAGAATTGGACGACAGTGTAT 1548
Query 1678 CAATGATCATTTCGAGATTCCTAAAGCA-ACAAGAGTTGTGTTGGAGAAGAAAGGTCATG 1736
||||| ||||| ||||||||| ||| | |||||| ||||||||||||||||||| ||||
Sbjct 1549 -AATGACCATTTTGAGATTCCTGAAG-AGACAAGACTTGTGTTGGAGAAGAAAGGCCATG 1606
Query 1737 TCCTA-TCTCCTATTGCCGGAGGGACGATTGCTCAGTTCATAGTTCAAGAATCCGGTGAG 1795
||||| | || |||||||||||||||||| |||||||||||||| ||||||||| || |
Sbjct 1607 TCCTAATG-CCGATTGCCGGAGGGACGATTTCTCAGTTCATAGTTGAAGAATCCGATG-G 1664
Query 1796 AA-CTCCGGTGGAA-GAAGTGAGCTTGTGGCAGTTAGTGATCCTCGAAAAGGAGGGTTCC 1853
|| ||||||||||| || || |||||||||| || |||||||| | |||||||||||||
Sbjct 1665 AAGCTCCGGTGGAATGA-GTAAGCTTGTGGCGGTCAGTGATCCAAGGAAAGGAGGGTTCC 1723
Query 1854 CTTCAGGATATTGA 1867
||||||||||||||
Sbjct 1724 CTTCAGGATATTGA 1737
> Ahg908566 jgi|Araly1|908566|Al_scaffold_0002_1647
Length=468
Score = 507 bits (274), Expect = 2e-142
Identities = 401/462 (87%), Gaps = 9/462 (2%)
Strand=Plus/Plus
Query 1413 ATGTTCCACCACCAGCACCAGCTAACTTCATCCGTCCTGGAAAACGACCTTTGTCCTCTA 1472
|||| || ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 5 ATGTGCCGCCACCGGCACCAGCTAACTTCATCCGTCCCGGGAAACGACCTTTGTCCTCTA 64
Query 1473 TGTCACCCACCATTGTACTCAAGGAC-GGTAAAGTGAAAGCCGCTGTGGGTGCGAGCGGA 1531
|| |||||||||||||||| |||| | ||||||||||||||||| || || |||||||||
Sbjct 65 TGACACCCACCATTGTACTGAAGG-CTGGTAAAGTGAAAGCCGCGGTAGGAGCGAGCGGA 123
Query 1532 GGAGCCAACATTATTGCCGGGACAACGGAAGTTTACTTGAATCATTTTTTCCTCAAGATG 1591
|||| ||||| || |||||||||| ||||||||| |||||| | ||||||||||||||
Sbjct 124 GGAGTAAACATCATCGCCGGGACAATGGAAGTTTATTTGAATTGTATTTTCCTCAAGATG 183
Query 1592 GATCCTCTTTCTTCCGTCTTAGCTCCAAGAATCTACCATCAGCTGATACCAAACAGAGCT 1651
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 184 GATCCTCTGTCTTCCGTCTTGGCTCCAAGAATCTACCATCAGCTGATACCAAACATAGTT 243
Query 1652 TCGTACGAGAACTGGACAACAGTATTCAATGATCATTTCGAGATTCCTAAAGCA-ACAAG 1710
||||| || || ||||||||||| |||||||||||||||||| |||| |||| | |||||
Sbjct 244 TCGTATGAAAATTGGACAACAGTGTTCAATGATCATTTCGAGGTTCCGAAAG-AGACAAG 302
Query 1711 AGTTGTGTTGGAGAAGAAAGGTCATGTCCTATCTCCTATTGCCGG-AGGGACGATTGCTC 1769
|||||| ||||||||||||||||||| |||| || || || | ||| ||||||| ||
Sbjct 303 AGTTGTCTTGGAGAAGAAAGGTCATGCCCTAAGGCCGATC-CCTGTAGGAACGATTGTTC 361
Query 1770 AGTTCATAGTTCAAGAATCCGGTG-AGAACTCCGGTGGAAGAAGTGAGCTTGTGGCAGTT 1828
| |||||||||||||||||| ||| | || ||| |||||| |||||||||||||| ||
Sbjct 362 AATTCATAGTTCAAGAATCCAGTGCA-AATTCCAGTGGAATTAGTGAGCTTGTGGCGGTA 420
Query 1829 AGTGATCCTCGAAAAGGAGGG-TTCCCTTCAGGATATTGAGA 1869
|||||||| |||||| ||| |||||||| |||||||||||
Sbjct 421 AGTGATCCAATAAAAGGGGGGGTTCCCTTCGGGATATTGAGA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74009346035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5