BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39650.1
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888185 jgi|Araly1|888185|Al_scaffold_0007_171 2590 0.0
Ahg490743 jgi|Araly1|490743|fgenesh2_kg.7__176__AT4G39640.1 1799 0.0
> Ahg888185 jgi|Araly1|888185|Al_scaffold_0007_171
Length=1737
Score = 2590 bits (1402), Expect = 0.0
Identities = 1617/1723 (94%), Gaps = 6/1723 (0%)
Strand=Plus/Plus
Query 60 GCTCGTTCGTACTGCGACGATCGCTCTTCTTCTAATCGCGTTTCTGCAAAACGCTAACGC 119
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 18 GCTTGTTCGTACTGCGACGGTCGCTCTTCTTCTAATCGCGTTTCTGCAAAACGCTAATGC 77
Query 120 TGTGAAAAATCTGCAAAGTATTGTTGCGTATCACGGTGCGGTTGCGACAGACGATGGACG 179
|| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 78 TGAGAAAAATCAGCAAAGTATTGTTGCGTATCACGGTGCGGTTGCGACGGACGATGGGCG 137
Query 180 GTGTTCTGCAATAGGGACGAATGTTCTTCGTCAAGGAGGAAACGCGATTGATGCGTCGGT 239
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GTGTTCTGAAATCGGGACGAATGTTCTTCGTCAAGGAGGAAACGCGATTGATGCGTCGGT 197
Query 240 GGCTGCTGCTCTTTGTTTGGGCGTTGTCAGTCCCGCATCTAGCGGTATAGGCGGTGGAGC 299
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 198 GGCTGCTGCTCTTTGTTTGGGCGTTGTCAGTCCCGCGTCTAGCGGTGTAGGCGGTGGAGC 257
Query 300 GTTTACAATGATTAAGCTAGCTAATGGC-ACGGAAGTTGCTTATGATTCCAGAGAAACCG 358
||||| | | || || || ||||||||| | ||| | ||||||||||| ||||||||||
Sbjct 258 GTTTATAGTAATCAAACTCGCTAATGGCGA-AGAAATAGCTTATGATTCTAGAGAAACCG 316
Query 359 CTCCTCTAAGCGCCACTGAGGATATGTATGGTGATAATCCTGAGCGAAAGAAGAAAGGAT 418
|||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 317 CTCCTCTAAGCGCCTCTGAGAATATGTATGGTGGTAATCCTGAGCAAAAGAAGAAAGGAG 376
Query 419 CCTTGTCAGTAGGCGTTCCCGGGGAAGTCGCGGGTCTATACACGGCTTGGACACAACACG 478
|||| ||||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 377 CCTTATCAGTAGCCGTTCCCGGGGAAGTCGCTGGTCTATTCACGGCTTGGACAAAACACG 436
Query 479 GGAAGTTACCGTGGAAGCAGTTAGTAGAACCTGCTGAGAAACTTGCAGCTGAAGGATTCA 538
|||||||||| |||||||||||||| ||||| || |||||||||||||||||||| |||
Sbjct 437 GGAAGTTACCATGGAAGCAGTTAGTGGAACCCGCAGAGAAACTTGCAGCTGAAGGTTTCG 496
Query 539 AGATTTCAAAATATCTCTATATGCAGATGAATGCGACTAGAAGCGATATCTTAGCGGACA 598
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 497 AGATTTCAAAATATCTCTATATGCAGATGAACGCGACTAGAAGCGATATCTTAGCAGACA 556
Query 599 AAGGTCTCTCTGAGCTATTTGTTTCAAATGGAGAGCTCAAGAAACCAGGGGCGATTTGCC 658
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 557 AAGGTCTCTCTGAGCTTTTTGTTTCAAATGGAGAGCTCAAGAAACCAGGGACGATTTTCC 616
Query 659 -GTAACCCGAAATTGGCTGATACACTAAGCCAAATCGCTGAATACGGTCCAAAAGCGTTT 717
| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 617 AG-AACCCAAAATTGGCTTTTACACTAAGCCAAATCGCTGAATACGGTCCAAAAGCGTTT 675
Query 718 TACAATGGCACGGTTGGGTTTAACCTAGTGAGTGATATACAAAAAGCCGGAGGGATAATA 777
|||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||
Sbjct 676 TACAATGGCACGGTTGGGGCTAACCTAGTGAGTGATATACAAAAATCAGGAGGAATAATC 735
Query 778 ACTTTGAAAGATTTGCAGAATTACAACGTTAAGGTTAAAGAACCATTATCTACGGAGATT 837
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 736 ACTTTGAAAGATTTGCAGAATTACAACGTTAAGGTTAAAGAACCATTATCTGCGGATATT 795
Query 838 CTTGGATACCGATTACTCGGCATGCCTCCTCCTTCATCTGGTGGCCCTGCAATGATGCTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CTTGGATACCGATTACTCGGCATGCCTCCTCCTTCATCTGGTGGCCCTGCAATGATGCTT 855
Query 898 ATTTTGAACATTCTTGCTCAATATGGTATTCCATCGGGTGTTTC-CGGCCCCCTCGGTGT 956
|||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||
Sbjct 856 ATTTTGAACATTCTTGCTCAATATGGTATTCCATATGGTG-TTCACGGCGCCCTCGGTGT 914
Query 957 TCATCGACTAGTTGAGGCTCTCAAACATGCATTCGCAGTTAGAATGAACCTCGGGGATCC 1016
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 915 TCATCGACTAGTTGAGGCTCTCAAACATGCATTCGCGGTAAGAATGAACCTCGGGGATCC 974
Query 1017 AGATTTTGTCCCTGAAGTTACTAATGTTGTTGCAGATATGTTATCTCCAAAGTTTGCACA 1076
|||||| |||||||| ||||| || |||||| |||||||||| |||||||||||||| ||
Sbjct 975 AGATTTCGTCCCTGATGTTACCAAGGTTGTTTCAGATATGTTGTCTCCAAAGTTTGCGCA 1034
Query 1077 AGACTTGAAGAGCAAGATAAACGATGAGAAGACCTTTGATCCAAAATATTACGGTGGCAA 1136
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1035 AGACTTGAAGAGCAAGATAAACGATGAGAAGACCTTTGGTCCAAAATTTTACGGTGGCAA 1094
Query 1137 ATGGGGTCAGATCAAGGATCATGGGACGAGCCATTTATCGATAATAGATTCTGAGAGAAA 1196
|||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1095 ATGGAATCAGATAAAGGATCATGGGACGAGCCATTTATCGATAATAGATTCGGAGAGAAA 1154
Query 1197 TGCTGTTTCAATGACTAGTACAATCAACGGATACTTTGGGGCAATAATGCTGTCTCCGAG 1256
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TGCTGTTTCAATGACTACTACAATCAACGGATACTTTGGGGCAATAATGCTGTCTCCGAG 1214
Query 1257 CACCGGAATCGTTCTAAACAACGAAATGGACGATTTCTCGATCCCGACGAAATCCGGAGG 1316
||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1215 CACTGGAATTGTTCTAAACAACGAAATGGACGATTTCTCGATCCCAATGAAATCCGGAGG 1274
Query 1317 TGACCCAGATGTGCCCCCACCAGCACCGGCTAACTTCATCCGACCGGGGAAACGACCTTT 1376
|| |||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1275 TGGCCCAGATGTGCCGCCACCGGCACCAGCTAACTTCATCCGTCCGGGGAAACGACCTTT 1334
Query 1377 GTCCTCTATGACTCCCACCATTGTACTCAAGGACGGTAAAGTGAAAGCAGCATTGGGTGC 1436
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1335 GTCATCTATGACTCCCACCATTGTACTCAAGGACGGTAAAGTGAAAGCAGCACTGGGTGC 1394
Query 1437 GAGTGGAGGAATGTACATCATCGCCGGTACAACACAAGTTTACTTAAATCATTTCTTCCT 1496
||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1395 GAGCGGAGGAATGTTCATCATCGCCGGTACAACAGAAGTTTACTTGAATCATTTCTTCCT 1454
Query 1497 CAACATGGATCCTCTCTCTTCCGTTGTTGCTCCAAGAATCTACCACCAGCTGATACCGAA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 CAACATGGATCCTCTCTCTTCCGTTGTTGCTCCAAGAATCTACCACCAGCTGATACCGAA 1514
Query 1557 CAAAGCTTCGTATGAGAATTGGACGACAGTGTATAGTGACCATTTCGAGATTCCTGAAGA 1616
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1515 CAAAGCTTCGTATGAGAATTGGACGACAGTGTATAATGACCATTTTGAGATTCCTGAAGA 1574
Query 1617 GATAAGACTTGTGTTGGAGAAGAAAGGTCAAGTCCTAACGCCGATCGCCGGAGGGACGAT 1676
|| |||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||
Sbjct 1575 GACAAGACTTGTGTTGGAGAAGAAAGGCCATGTCCTAATGCCGATTGCCGGAGGGACGAT 1634
Query 1677 TTCTCAGCTCATAGTTGAACAATCCGATGGAAAATCCGGTGGAATTAGTAAGCTTGTGGC 1736
||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 1635 TTCTCAGTTCATAGTTGAAGAATCCGATGGAAGCTCCGGTGGAATGAGTAAGCTTGTGGC 1694
Query 1737 GGTTAGTGATCCAAGGAAAGGAGGGTTCCCTTCAGGATATTGA 1779
||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1695 GGTCAGTGATCCAAGGAAAGGAGGGTTCCCTTCAGGATATTGA 1737
> Ahg490743 jgi|Araly1|490743|fgenesh2_kg.7__176__AT4G39640.1
Length=1914
Score = 1799 bits (974), Expect = 0.0
Identities = 1511/1771 (85%), Gaps = 34/1771 (2%)
Strand=Plus/Plus
Query 26 AAGAAAGAGACATCCATATGAATTCATTTATGTCGCTCGTTCGTACTGCGACGATCGCTC 85
||||| ||||| ||| ||| |||| | |||||||| ||||| || | |||||||| ||
Sbjct 118 AAGAACGAGACGTCCCTATAAATT-AGCAATGTCGCTAGTTCGAACAGTGACGATCGTTC 176
Query 86 TTCTTCTAATCGCGTTTCTGCAAAACGCTAAC-GCTGTGAAAA-ATCTGCAAAGTATTGT 143
|| || ||||||||||||||||||||||| | ||| ||||| | | ||| ||||||||
Sbjct 177 TTTTTATAATCGCGTTTCTGCAAAACGCT-GCGGCTCAGAAAAGA-CAGCAGAGTATTGT 234
Query 144 TGCGTATCACGGTGCGGTTGCGACAGACGATGGACGGTGTTCTGCAATAGGGACGAATGT 203
| || | |||||||||||| || || |||||||||||||||| ||| |||| ||||||
Sbjct 235 TAAGTCCCGCGGTGCGGTTGCAACGGATGATGGACGGTGTTCTGTAATCGGGATGAATGT 294
Query 204 TCTTCGTCAAGGAGGAAACGCGATTGATGCGTCGGTGGCTGCTGCTCTTTGTTTGGGCGT 263
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 295 TCTTCGTGAAGGAGGAAACGCGATTGATGCGTCGGTGGCTGCTGCTCTTTGTTTGGGAGT 354
Query 264 TGTCAGTCCCGCATCTAGCGGTATAGGCGGTGGAGCGTTTACAATGATTAAGCTAGCTAA 323
|||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 355 TGTCAGTCCCGCGTCTAGCGGTATAGGCGGTGGAGCGTTTACAGTGGTTAAGATAGCTGG 414
Query 324 TGGCACGGAAGTTGCTTATGATTCCAGAGAAACCGCTCCTCTAAGCGCCACTGAGGATAT 383
||| | ||| | ||||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct 415 TGGGAAAGAAATCGCTTATGATTCTAGAGAAACCGCTCCTTTAAGCGCCACTGAGAATAT 474
Query 384 GTATGGTGATAATCCTGAGCGAAAGAAGAAAGGATCCTTGTCAGTAGGCGTTCCCGGGGA 443
|||||| | |||| ||||| ||||||||||||| |||| |||||||||||||| |||||
Sbjct 475 GTATGGAGGTAATGTTGAGCTAAAGAAGAAAGGAGCCTTATCAGTAGGCGTTCCTGGGGA 534
Query 444 AGTCGCGGGTCTATACACGGCTTGGACACAACACGGGAAGTTACCGTGGAAGCAGTTAGT 503
|||||| ||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct 535 AGTCGCAGGTCTATTCACGGCTTGGAAACAACACGGGAAGCTACCGTGGAAGCGGTTAGT 594
Query 504 -AGAACCTGCTGAGAAACTTGCAGCTGAAGGATTCAAGATTTCAAAATATCTCTATATGC 562
|| ||||| ||||||||||||| | ||||||||||||||||| ||||| |||||||
Sbjct 595 GAGT-CCTGCAGAGAAACTTGCAGA-G--GGATTCAAGATTTCAAAGTATCTTTATATGC 650
Query 563 AGATGAATGCGACTAGAAGCGATATCTTAGCGGACAAAGGTCTCTCTGAGCTATTTGTTT 622
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 651 AGATGAATGCGACTAGAAGCGATATCTTAGCAGACAAAGGTCTCTCTGACCTATTTGTTT 710
Query 623 CAAATGGAGAGCTCAAGAAACCAGGGGCGATTTGCCGTAACCCGAAA-TTGGCTGATACA 681
||||||||||||||||||||||||| ||||||||| |||||| ||| |||||| || |
Sbjct 711 TAAATGGAGAGCTCAAGAAACCAGGGACGATTTGCCATAACCC-AAACTTGGCTT-TA-A 767
Query 682 C-T-AAGCCAAATCGCTGAATACGGTCCAAAAGCGTTTTACAATGGCACGGTTGGGTTTA 739
| | ||| | ||| | || |||||||||||||| |||||||||||||| |||||| |||
Sbjct 768 CCTTAAGGCTAATTGGAGAGTACGGTCCAAAAGCATTTTACAATGGCACTGTTGGGGTTA 827
Query 740 ACCTAGTGAGTGATATACAAAAAGCCGGAGGGATAATAACTTTGAAAGATTTGCAGAA-T 798
|||||| ||| ||||| | ||| | |||||||||||||||||||||||| |||| || |
Sbjct 828 ACCTAGCGAGAGATATCCTTAAATCTGGAGGGATAATAACTTTGAAAGATCTGCA-AAGT 886
Query 799 TACA-ACGTTAAGGTTAAAGAACCATTATCTACGGAGATTCTTGGATACCGATTACTCGG 857
|| | | |||||| |||| ||||| || | | || ||||||||||| ||| |||| ||
Sbjct 887 TATAGA-GTTAAGATTAACGAACCGTTGGCCGCAGACATTCTTGGATATCGAGTACTTGG 945
Query 858 CATGCCTCCTCCTTCATCTGGTGGCCCTGCAATGATGCTTATTTTGAACATTCTTGCTCA 917
||||||||||||||||| |||||| |||||||||||||| |||||||||||||| | ||
Sbjct 946 TATGCCTCCTCCTTCATCCGGTGGCGCTGCAATGATGCTTGTTTTGAACATTCTTTCCCA 1005
Query 918 ATATGGTATTCCATCGGGTGTTTCCGGCCCCCTCGGTGTTCATCGACTAGTTGAGGCTCT 977
|||||| |||||||| |||||||| ||||| |||||||||||||||||| | || |||||
Sbjct 1006 ATATGGGATTCCATCAGGTGTTTCAGGCCCTCTCGGTGTTCATCGACTAATCGAAGCTCT 1065
Query 978 CAAACATGCATTCGCAGTTAGAATGAACCTCGGGGATCCAGATTTTGTCCCTGAAGTTAC 1037
|||||||| ||||||||||||||||||||||| ||||| ||||| | |||| |||||
Sbjct 1066 GAAACATGCGTTCGCAGTTAGAATGAACCTCGGAGATCCGGATTT---CACTGATGTTAC 1122
Query 1038 TAATGTTGTTGCAGATATGTTATCTCCAAAGTTTGCACAAGACTTGAAGAGCAAGATAAA 1097
|| |||||| | |||||| | ||||||||||||||| ||||||||||||| ||||||||
Sbjct 1123 CAAGGTTGTTTCGGATATGCTGTCTCCAAAGTTTGCAGAAGACTTGAAGAGAAAGATAAA 1182
Query 1098 CGATGAGAAGACCTTTGATCCAAAATATTACGGTGGCAAATGGGGTCAGATCAAGGATCA 1157
|| || || ||||||||||||||||||||||| |||| ||| ||||||| | || ||
Sbjct 1183 GGACGAAAAAACCTTTGATCCAAAATATTACGGCGGCATGTGGAATCAGATCGACGACCA 1242
Query 1158 TGGGACGAGCCATTTATCGATAATAGATT-CTGAGAGAAATGCTGTTTCAATGACTAGTA 1216
||||| || ||||||||||| |||||| | ||||| ||||| ||||||||||||||||
Sbjct 1243 CGGGACAAGTCATTTATCGATCATAGATCGC-GAGAGGAATGCAGTTTCAATGACTAGTA 1301
Query 1217 CAATCAACGGATACTTTGGGGCAATAATGCTGTCTCCGAGCACCGGAATCGTTCTAAACA 1276
| || || || |||||||||||| | ||||| ||||| ||||| ||||| ||||| ||||
Sbjct 1302 CTATAAATGGCTACTTTGGGGCATTGATGCTATCTCCTAGCACAGGAATAGTTCTGAACA 1361
Query 1277 ACGAAATGGACGATTTCTCGATCCCGACGAAATCCGGA-GGTGACCCAGATGTGCCCCCA 1335
||||||||||||||||||| ||||||| ||||| | ||| || |||||| || |||
Sbjct 1362 ACGAAATGGACGATTTCTCAATCCCGATGAAATTTA-ACGGTAACTTAGATGTTCCTCCA 1420
Query 1336 CCAGCACCGGCTAACTTCATCCGACCGGGGAAACGACCTTTGTCCTCTATGACTCCCACC 1395
|||||||| |||||||||||||| || || ||||||||||||||||||||| | ||||||
Sbjct 1421 CCAGCACCAGCTAACTTCATCCGTCCTGGAAAACGACCTTTGTCCTCTATGTCACCCACC 1480
Query 1396 ATTGTACTCAAGGACGGTAAAGTGAAAGCAGCATTGGGTGCGAGTGGAGGAATGTACATC 1455
|||||||||||||| |||||||||||||| || |||| ||||| |||||| ||||
Sbjct 1481 ATTGTACTCAAGGATGGTAAAGTGAAAGCCGCGGTGGGAGCGAGCGGAGGAGCCAACATT 1540
Query 1456 ATCGCCGGTACAACACAAGTTTACTTAAATCATTTCTTCCTCAACATGGATCCTCTCTCT 1515
|| || || ||||| |||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 1541 ATTGCTGGGACAACGGAAGTTTACTTGAATCATTTTTTCCTCAAGATGGATCCTCTTTCT 1600
Query 1516 TCCGTTGTT-GCTCCAAGAATCTACCACCAGCTGATACCGAACAAAGCT-TCGTATGAGA 1573
||||| || ||||||||||||||||| ||||||||||| |||| || | |||| |||||
Sbjct 1601 TCCGTC-TTAGCTCCAAGAATCTACCATCAGCTGATACCAAACAGAG-TATCGTTTGAGA 1658
Query 1574 ATTGGACGACAGTGTAT-AGTGACCATTTCGAGATTCCTGAAGAGATAAGACTTGTGTTG 1632
||||||| ||||| | | | ||| ||||||||||||||| ||| || |||| ||||||||
Sbjct 1659 ATTGGACCACAGTAT-TCAATGATCATTTCGAGATTCCTAAAGCGACAAGAGTTGTGTTG 1717
Query 1633 GAGAAGAAAGGTCAAGTCCTAACGCCGATCGCCGGAGGGACGATTTCTCAGCTCATAGTT 1692
|||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||||||||
Sbjct 1718 GAGAAGAAAGGTCATGTCCTATCGCCCATCGCCGGAGGGACGATTGCTCAGTTCATAGTT 1777
Query 1693 GAACAATCCGATGGAAAATCCGGTGGAATTAGTAAGCTTGTGGCGGTTAGTGATCCAAGG 1752
|| |||||| ||| || ||||| |||| ||| |||||||||| || |||||||| ||
Sbjct 1778 CAAGAATCCGGTGGGAACTCCGGCGGAAGGAGTGAGCTTGTGGCAGTAAGTGATCCTAGA 1837
Query 1753 AAAGGAGGGTTCCCTTCAGGATATTGA-AAT 1782
|||||||||||||| |||||||| ||| |||
Sbjct 1838 AAAGGAGGGTTCCCGTCAGGATACTGAGAAT 1868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5