BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39660.1
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490746 jgi|Araly1|490746|fgenesh2_kg.7__179__AT4G39660.1 2388 0.0
> Ahg490746 jgi|Araly1|490746|fgenesh2_kg.7__179__AT4G39660.1
Length=1518
Score = 2388 bits (1293), Expect = 0.0
Identities = 1446/1521 (95%), Gaps = 6/1521 (0%)
Strand=Plus/Plus
Query 21 TCTATCTAATAAATGGCGTTACAAAGGCAACTCCTGAAGAGAGCTACTTCCGATATCTAT 80
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1 TCTTTCTAATAAATGGCGTTACAAAGGCAACTCCTGAAGAGAGCTTCTTCCGGTATCTAT 60
Query 81 CACCGCCGTGCGATCTCTCTCCTCCGTACTGATTTCTCTACTTCTCCTTCGATTGCTGAT 140
|| ||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CATCGCAGTGAGATTTCTCTCCTCCGTACTGATTTCTCCACTTCTCCTTCGATTGCTGAT 120
Query 141 GCTCCGCCGCACATTCCGCCGTTCG-TTCACCAGCCACGGCCGTATAAAGGTCCTTCCGC 199
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 121 GCTCCGCCGCAGATTCCGCCGTTCGATT-ACCAGCCACGGCCGTATAAAGGTCCTTCCGC 179
Query 200 CGATGAGGTTTTACAGAAACGGAAGAAGTTTCTCGGACCTTCTCTTTTCCACTACTACCA 259
|||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 CGATGAAGTTTTCCAGAAACGGAAGAAGTTTCTCGGACCTTCTCTTTTCCACTTCTACCA 239
Query 260 GAAGCCTCTTAACATCGTTGAAGGGAAGATGCAGTACTTGTATGATGAGAGTGGTAGGCG 319
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 AAAGCCTCTTAACATTGTTGAAGGGAAGATGCAGTACTTGTTTGATGAGAGTGGTAGGCG 299
Query 320 ATATCTGGATGCCTTTGCTGGAATAGTCACTGTGTCGTGCGGTCACTGCCATCCGGATAT 379
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 300 ATATCTTGATGCCTTTGCTGGAATAGTCACTGTCTCGTGCGGTCACTGCCATCCGGAGAT 359
Query 380 TCTTAATGCGATTACGGAACAGAGCAAGCTACTTCAGCACGCGACTACTATTTACCTGCA 439
||| ||||| || ||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 360 TCTAAATGCTATCGTGGAACAGAGCAAGCTTCTTCAGCATGCGACGACCATTTACCTGCA 419
Query 440 TCATGCCATTGGTGATTTTGCTGAAGCATTGGCTGCCAAGATGCCCGGAAATCTTAAGGT 499
||||||||| || ||||| ||||||||||| ||||| |||||||| |||||||| |||||
Sbjct 420 TCATGCCATAGGCGATTTCGCTGAAGCATTAGCTGCTAAGATGCCTGGAAATCTAAAGGT 479
Query 500 TGTGTACTTTGTGAATTCTGGCTCAGAAGCTAATGAGCTAGCAATGATGATGGCTAGGCT 559
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 480 TGTATACTTTGTGAATTCTGGATCAGAAGCTAATGAGCTAGCGATGATGATGGCTAGGCT 539
Query 560 TTACACTGGTAGCCTTGAGATGATTTCCTTGAGAAATGCTTATCATGGTGGAAGTTCCAA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TTACACTGGTAGCCTTGAGATGATTTCCTTGAGAAATGCTTATCATGGTGGAAGTTCTAA 599
Query 620 TACTATTGGACTAACTGCTCTTAACACATGGAAGTACCCATTACCTCAGGGGGAAATCCA 679
||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TACCATTGGACTAACAGCTCTGAACACATGGAAGTACCCATTACCACAGGGGGAAATCCA 659
Query 680 TCACGTAGTAAATCCAGATCCATACCGTGGAGTTTTTGGCTCTGATGGTTCTCTTTATGC 739
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TCACGTTGTAAATCCAGATCCATACCGTGGAGTCTTTGGCTCTGATGGTTCTCTTTATGC 719
Query 740 TAAAGATGTTC-ATGACCACATCGAGTATGGTACCTCTGGAAAAGTAGCTGGATTTATCG 798
|||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 TAAAGATG-TCAAAGACCACATCGAGTATGGTACCTCTGGAAAAGTAGCGGGATTTATCG 778
Query 799 CAGAGACCATCCAGGGGGTCGGAGGAGCTGTAGAATTGGCTCCTGGTTACTTAAAGTCGG 858
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 CAGAGACCATCCAGGGGGTCGGAGGGGCTGTAGAATTGGCTCCTGGTTACTTAAAGTCGG 838
Query 859 TTTATGAAATTGTTCGCAACGCTGGTGGTGTATGCATTGCTGATGAAGTCCAAACTGGAT 918
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 839 TTTATGAAATTGTTCGCAACGCTGGTGGTGTATGCATTGCCGATGAAGTCCAAACTGGAT 898
Query 919 TTGGGCGAACAGGAAGCCACTATTGGGGTTTCCAGACTCAAGATGTGGTTCCTGACATAG 978
||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGGGAGAACAGGAAGTCATTATTGGGGTTTCCAGACTCAAGATGTGGTTCCTGACATAG 958
Query 979 TCACAATGGCAAAGGGAATTGGAAATGGATTGCCATTAGGAGCTGTGGTGACTACACCAG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCACAATGGCAAAGGGAATTGGAAATGGATTGCCATTAGGAGCTGTGGTGACTACACCAG 1018
Query 1039 AAATCGCAAGTGTTTTAGCTAGCAAGATTCTGTTCAACACTTTTGGTGGGAACCCGGTTT 1098
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1019 AAATCGCGAGTGTTTTAGCTAGCAAGATTCTGTTCAACACATTTGGTGGAAACCCGGTTT 1078
Query 1099 GTTCAGCTGGTGGACTTGCGGTTCTAAACGTTATTGATAAGGAGAAACGCCAAGAACATT 1158
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 GTTCAGCTGGTGGACTTGCTGTTCTAAACGTTATTGACAAGGAGAAACGCCAAGAACATT 1138
Query 1159 GTGCTGAAGTTGGTTCACACCTTATACAACGTTTGAAAGATGTGCAGAAAAGACATGATA 1218
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1139 GTGCTGAAGTTGGTTCACACCTTATTCAACGTTTGAAAGATCTGCAGAAAAGACATGATA 1198
Query 1219 TCATTGGAGACGTGAGAGGAAGAGGGTTAATGGTTGGGATTGAGCTTGTGAGTGACCGGA 1278
|||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1199 TCATTGGAGATGTGAGAGGAAGAGGACTAATGGTTGGGATCGAGCTTGTGAGTGACCGGA 1258
Query 1279 AAGACAAGACACCAGCCAAGGCTGAAACATCTGTCTTGTTTGAGCAACTTAGAGAACTTG 1338
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 AAGACAAGACACCAGCCAAGGCTGAAACAGCTGTCTTGTTTGAGCAACTTAGAGAACTTG 1318
Query 1339 GCATTCTCGTCGGAAAAGGAGGACTTCATGGGAACGTTTTCAGGATAAAGCCACCAATGT 1398
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GAATTCTCGTTGGAAAAGGAGGACTTCATGGGAACGTTTTCAGGATAAAGCCACCAATGT 1378
Query 1399 GTTTCACTAAAGATGATGCAGATTTCTTGGTAGATGCATTGGACTATTCCATCTCCAGGT 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1379 GTTTCACTAAAGATGATGCAGATTTCTTGGTAGATGCATTGGACTATTCCATCTCGAGGT 1438
Query 1459 TGTGAACAAGGATGAAACAAAGCCAACGAGAGTTTTTAACCA-TATGAACCGTTTTAATG 1517
|||||||||||||||||||||||||| ||||||||| ||| | ||||| |||||||||||
Sbjct 1439 TGTGAACAAGGATGAAACAAAGCCAATGAGAGTTTTCAAC-AGTATGATCCGTTTTAATG 1497
Query 1518 TTTCCGCGTCTTTGTAACGAA 1538
|||||||||||||||||||||
Sbjct 1498 TTTCCGCGTCTTTGTAACGAA 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66238936055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5