BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39670.1
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943961 jgi|Araly1|943961|scaffold_700190.1 1064 0.0
> Ahg943961 jgi|Araly1|943961|scaffold_700190.1
Length=739
Score = 1064 bits (576), Expect = 0.0
Identities = 673/719 (94%), Gaps = 9/719 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCAGAAGTAGAAG---AGGAAGAAGAAGACATGTTCGAAGACGCCGTGTGTACC 57
||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 21 ATGGAAGAAGAAGAAGAAGATCAGGAAGAAGAAGACATGTTCGAAGATGCCGTGTGTACC 80
Query 58 ACGCAAGCAAGAGTCAACACGCCATTGTCCGTAATCACAGAGGCCTTCGAAGATCTCGCG 117
|||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 81 ACGCCAGCCAGAGTCAACACGCCTTTGTCCGTAATCACAGAGGCCTTCGAAGATCTCGCA 140
Query 118 GATCTGGTGAAACCGCAACGATCTGATGAGATCGATGAAGAC---GA---ATTAAGGCTT 171
||||| |||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 141 GATCTTCTGAAACCGCAACGATCTGATGAGATCGAAGAAGACGAAGACGGATTAAGGCTT 200
Query 172 GATGATTTCTGCAGTGCGTGTACTCACGTCTCTGTTCTCTTCAATTGTCTTGGATTCGCT 231
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 201 GGTGATTTCTGCAGTGCGTGTACTCATGTCTCTGTTCTCTTCAATTGTCTTGGATTCGCT 260
Query 232 TTCAAATTTGCGGAAATGGAGTACATCGCCAAGGTTAAGGATTTGGTGGAAGCGTCGAAA 291
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 261 TTCAAATTTGCGGAAATGGAGTACATCGCCAAGGTTAAGGATTTGGTTGAGGCGTCAAAA 320
Query 292 ACGTTCGAAACGTTACACAACATTCTTGACCTAGACGTGGAGAAAGAAACGGTTAAAACA 351
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 321 ACGTTCGACACGTTACAGAACATTCTTGATCTAGACGTGGAGAAAGAAACGGTTAAAACA 380
Query 352 CCGGGGAGCCATTCGCGTAACCTAAGACGTGTGAGACAAGGTTTAGATCTGATCCGAGCC 411
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 381 CCGGGAAGCCATTCACGTAACCTAAGACGTGTTAGACAAGGTTTAGATCTGATCCGAGCC 440
Query 412 ATCTTTGAACAATTTTTGATCGCAGATGACTATTCGTTGAAAGACGCTGCGACAACGGCT 471
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 441 ATCTTTGAACAATTCTTGATCGCTGATGACTATTCCTTGAAAGACGCTGCGACCACGGCT 500
Query 472 TACACGGAAGTGTGTGCACCGTTCCATACGTGGGCCGTTAGAACCGCGGTTTACGCCGGA 531
||||| ||||| || |||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 501 TACACCGAAGTCTGCGCACCGTTCCATACATGGGCAGTTAGGACCGCGGTTTACGCCGGA 560
Query 532 ATGTATACACTTCCGACGAGGGATCAACTTCTCTTACGGCTCAATGAAACTGATCAATCG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATGTATACACTTCCGACGAGGGATCAACTTCTCTTACGGCTCAATGAAACTGATCAATCG 620
Query 592 GTTGAGAAGAACATGAGGAGGTACATGGAAGCATCGCGACCTATCATAGAATATATTGAC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GTTGAGAAGAACATGAGGAGGTACATGGAAGCATCGCGACCTATCATAGAATATATTGAC 680
Query 652 AAGCTTTACATTGAAAGGAATATTAAACTCGATTGGTAAAAAATTTGTTCTGCATCAAG 710
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |||
Sbjct 681 AAGCTTTACATTGAAAGGAACATTAAACTCGATTGGTAAATTTTTTGTTCTACATTAAG 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30650825268
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5