BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39675.1

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490748 jgi|Araly1|490748|fgenesh2_kg.7__181__AT4G39675.1          542    1e-153
  Ahg481075 jgi|Araly1|481075|fgenesh2_kg.4__135__AT2G22122.1         82.4    3e-15 


> Ahg490748 jgi|Araly1|490748|fgenesh2_kg.7__181__AT4G39675.1
Length=407

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 370/407 (91%), Gaps = 6/407 (1%)
 Strand=Plus/Plus

Query  35   ACATTTATTTTGTTAACCAACACTAAAAAGTAATGTCGTCCATTGGAGCAAGTTACGCAC  94
            |||||||||| |||||  |||||||||||| |||||||||||| ||||||||||||||||
Sbjct  2    ACATTTATTTCGTTAATTAACACTAAAAAGAAATGTCGTCCATCGGAGCAAGTTACGCAC  61

Query  95   ACCTACAAGTCATGCAGAAGAAGCAGAAGGAGAAGATGAAAAAGCTAGAAAAGGAGAGAA  154
            ||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||
Sbjct  62   ACCTACAAGTCATGCAGAAGAAGCAAAAGGAGAAGATGAAAAAGAGAGAAAAAGAGAGAA  121

Query  155  ACTTCGACCACGATGAAGCTCATAGAC-TCCCTGTCGAAACATCTTTTGCGTCCGGAAGG  213
            |||||| |||||||||| ||||||| | |   |||||||||  ||||||| || ||||||
Sbjct  122  ACTTCGGCCACGATGAAACTCATAGCCGTGA-TGTCGAAACCCCTTTTGCCTCGGGAAGG  180

Query  214  ATTTCTAATAAAATCTATCCTTCTCGTTTGTCTTATGAACAAGTAGAGTTCAAATCACAA  273
            ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct  181  ATTTCTAATAAAATCTATCCTTCTCGTTTATCTTATGAACAAGTAGAGATCAAATCCCAA  240

Query  274  AAGTGAAGTTCAAAGT--AATGAAATTCTTGAAAAGGATCTTCAGAGCCTTCTCTCCCAA  331
            ||||||| ||||||||  ||||||||||||||| ||| | |||| || |||||||| |||
Sbjct  241  AAGTGAATTTCAAAGTGTAATGAAATTCTTGAAGAGGTTATTCAAAGACTTCTCTCTCAA  300

Query  332  GTATTTGTCCTTTGTGTTTGCATGTAATTATGTATGTATGTGTGATGTGTCTAAAACGTA  391
            ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  301  GTATTTGTCCTTTATGTTTGCATGTAATTATGTATGTATGTGTGATGTGTCCAAAACGTA  360

Query  392  TCTTGGTCGTCTTT--GTAGTTTTGTGAAAGTGTACAATTTGTGTGT  436
            |||||||||| |||  |||||||||||||||||||||||||||||||
Sbjct  361  TCTTGGTCGTGTTTTTGTAGTTTTGTGAAAGTGTACAATTTGTGTGT  407


> Ahg481075 jgi|Araly1|481075|fgenesh2_kg.4__135__AT2G22122.1
Length=515

 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 66/76 (87%), Gaps = 3/76 (4%)
 Strand=Plus/Plus

Query  66   AATGTCGTCCATTGGAGCAAGTTACGCACACCTACAAGTCATGCAGAAGAAGCAGAAGGA  125
            |||||| ||||| |||||||  || ||||| || ||||||||||||||||||||||||||
Sbjct  95   AATGTCTTCCATGGGAGCAAACTATGCACAACTTCAAGTCATGCAGAAGAAGCAGAAGGA  154

Query  126  GAA---GATGAAAAAG  138
            |||   ||||||||||
Sbjct  155  GAAAATGATGAAAAAG  170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16864770338


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5