BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39680.1
Length=2466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943964 jgi|Araly1|943964|scaffold_700193.1 2874 0.0
> Ahg943964 jgi|Araly1|943964|scaffold_700193.1
Length=1960
Score = 2874 bits (1556), Expect = 0.0
Identities = 1837/1964 (94%), Gaps = 54/1964 (3%)
Strand=Plus/Plus
Query 252 CTCTCATAAGCTAAGATGTCGTCATCGCCTTTTCCAGTCTTGGACAACCGACCAATTGAT 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CTCTCATAAGCTAAGATGTCGTCATCGCCTTTTCCAGTCTTGGACAACCGACCAATTGAT 65
Query 312 AAGTGGAAGGTTACGGAATTGAAAGAAGAGCTTAAAAGACGGAGACTAACAACAAGAGGC 371
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 AAGTGGAAGGTTACAGAATTGAAAGAAGAGCTTAAAAGACGGAGACTAACAACAAGAGGC 125
Query 372 TTGAAGGAGGAATTGGTTAGGCGTCTTGATGAAGCACTTCGTGCTGAGCAAGAAGAGTCT 431
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 126 TTGAAGGAGGAATTGGTTAGGCGTCTTGATGAAGCACTTCGTGTTGAGCAAGAAGAGTCT 185
Query 432 GAAAGGATCAATAGTGCTACTGTTGCTGCTGCTGAAAAAGCCAATCAAGAGCCTCAGATG 491
||||| ||| | | | | | |||||||||||| ||||||||||||||| |||| |||
Sbjct 186 GAAAGAATC-A-A---C-A--G-TGCTGCTGCTGAGAAAGCCAATCAAGAGGCTCATATG 236
Query 492 TTTCCTGTTACT---------GT--A-GGT------GATCGTAATCAAACCACTCCTGTT 533
|||||||||||| || | | | ||||||||||||||||||||||||
Sbjct 237 TTTCCTGTTACTGGAGGCGACGTCAATGTTACACCAGATCGTAATCAAACCACTCCTGTT 296
Query 534 ACTCCTGTTGAAGCGGCATTTAGCACTGAGACAACTCCTGTTACAGCTGAGAAAACCCCA 593
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 ACTCCTGTTGAAGCAGCATTTAGCACTGAGACAACTCCTGTTGCAGCTGAGAAAACCCCA 356
Query 594 GAACCAACTCAGACCAAGATAACAACTGAAGCTTCAGCTGGTGTTGAGACTACACCAGCC 653
||||||| |||| | |||| ||||||||||||||||||||||||||| || |||||| ||
Sbjct 357 GAACCAATTCAGGCTAAGACAACAACTGAAGCTTCAGCTGGTGTTGAAACAACACCAACC 416
Query 654 CCGGTGTTTTCAGAACCAGAGGTTAACGCTGTGCCATTCGCTAGTGATGAAGATGAGAAA 713
|| || |||||| |||||||||||||| | |||||||||||||||||||||| |
Sbjct 417 CCAGTATTTTCAAAACCAGAGGTTAACCCGGTGCCATTCGCTAGTGATGAAG-T-----T 470
Query 714 GAGAAAGTTGATGATGTTAGAGACATAGCTGGTCTTGATAGTTCAGTGGTTGCACGTGAT 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 471 GAGAAAGTTGATGATGTTAGAGACATAGCTGGTCTTGATAGTTCAGTGGTTGCATGTGAT 530
Query 774 GCAGCAGTTGTGCAAGTGGCGTCTAGTGAGCACAAATCTGAGAATAATGAACCATTTAGT 833
|||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 531 GCAGCAGTTGTGGACGTGGCCTCTAGTGAGCACAAATCTGAGAATAAGGAACCATTTAGT 590
Query 834 GGGTTGGATGGTGGGGATTCTAAGGCTCAACCATCAGAGGCAGTGCTTGAAAAATCTGCT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GGGTTGGATGGTGGGGATTCTAAGGCTCAACCATCAGAGGCAGTGCTTGAAAAATCTGCT 650
Query 894 ATGTACAACCAGGTATCTGAGGTCATCCCCGTTACAGGGTTTGAGGTAAAATCTGATTGT 953
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 651 ATGAACAACCAGGTATCTGAGGTCATCCCCATTACAGGGTTTGAGGTAAAATCTGATTGT 710
Query 954 ATTTCTACTGATTCTGTGTCAAATAATGAAAAAATAGAACTAAAGGATAACAAAATTGCT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATTTCTACTGATTCTGTGTCAAATAATGAAAAAATAGAACTAAAGGATAACAAAATTGCT 770
Query 1014 GATAATGTCAAATTAGAACAAAATGTTAATAAGTTCCAAGAGCCATCAACAGTCGTTGGC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GATAATGTCAAATTAGAACAAAATGTTAATAAGTTCCAAGAGCCATCAACAGTCGTTGGC 830
Query 1074 GAATCGCATCCAATGGATGTCGAGGAGCCACTTGAGCAGAAGACATCTGTTGGAGGTGGG 1133
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 831 GAATCGCATCCAATGGATGTCGAGGAGCCACTTGAGCAGAAGAAATCTGTTGGAGGTGGA 890
Query 1134 GATGACAGCAATGCTGCAAACGCAGATATGATCAAAGAAAATAATATTATCGATGCAGGC 1193
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 891 GATGACAGCAATGCTGCAAATGCAGATATGACCAAAGAAAATAATATTATCGATGCAGGC 950
Query 1194 GACTCAGAAAAGTTGAATTTAGATAGAAGTTCTGGTGATGAGTCTATGGAGGATGAGCCG 1253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GACTCAGAAAAGTTGAATTTAGATAGAAGTTCTGGTGATGAGTCTATGGAGGATGAGCCA 1010
Query 1254 GAGACAAAGCAATCCGAGTCAATTACATCTGATGATAAGAGTGCA-AAAATTGAAATGCT 1312
|||||||||||| | |||||||||||||||| ||||||||||| | |||||||||| ||
Sbjct 1011 GAGACAAAGCAAACTGAGTCAATTACATCTGTTGATAAGAGTG-AGAAAATTGAAACCCT 1069
Query 1313 TTCTAAGGAGGAAAGCCGTGCTGATATGGATGCGGGGAAAGGGAAATCCCCTGAAAATAA 1372
|||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 1070 TTCTAAGGAGGAAAGCCGTGCTGATAGGGATGCTGGGAAAGGGAAAGCCCCTGAAAATAA 1129
Query 1373 AAGTCACCCACTGGTGGCTTCTGACAAAAGAAAGCTTCCTGCTAATGATCAAGAAGCTGT 1432
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AAGTCATCCACTGGTGGCTTCTGACAAAAGAAAGCTTCCTGCTAATGATCAAGAAGCTGT 1189
Query 1433 TGGAAACAATGAACCTGCAAAGAGGC---GCCGATGGAACTCT-AATAGTATTAAAGTTC 1488
|||||||||||| ||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1190 TGGAAACAATGAGCCTGCAAAGAGGCAACGCCGATGGAACTCTGAA-AGTATTAAAGTTC 1248
Query 1489 CTGAAGCACAGATCACTAATAGTGCTACACCCACTACAACACCAAGGTCGACTGGTCTGA 1548
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1249 CTGAAGCACAGACCACGAATAGTGCTACACCCACTACAACACCAAGGTCGACCGGTCTGA 1308
Query 1549 AGCGCGACTTCTCAAGGTCTGACTCTTCGGTTAGTGAAGATGGACCCAAGGAACGTGTGG 1608
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1309 AGCGCGACTTCTCAAGATCTGACTCTTCGGTTAGTGAGGATGGACCCAAGGAACGCGTGG 1368
Query 1609 TTCCTCCATCTCCAAAGGAGCCTACAAATTCCCTCAGGATTGACCGTTTCCTTAGGCCGT 1668
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1369 TTCCTCCATCTCCAAAGGAGCCTACAAATTCCCTCAGGATTGATCGTTTCCTAAGGCCGT 1428
Query 1669 TCACACTGAAAGCTGTTCAGGAGCTCCTGGGTAAAACCGGAAATGTCACTAGTTTCTGGA 1728
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1429 TCACACTGAAAGCTGTTCAGGAACTCCTGGGTAAAACCGGAAACGTCACTAGTTTCTGGA 1488
Query 1729 TGGACCACATTAAGACCCACTGCTATGTATCGTATCCCTCGGTTGAAGAAGCAGCAGCAA 1788
||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1489 TGGACCACATTAAGACCCATTGCTATGTATCATATCCCTCTGTTGAAGAAGCTGCAGCAA 1548
Query 1789 CAAGAGAAGCAGTGTATAACCTCCAGTGGCCACCTAATGGAGGCCGCCATCTGATAGCTG 1848
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1549 CAAGAGAAGCAGTGTATAACCTCCAATGGCCACCTAATGGAGGCCGCCATCTGATAGCTG 1608
Query 1849 AATTTGTTAGAGCAGAAGAAGTAAAAGAAAAACTGGAAGCTCCTCTGCCTCCTC------ 1902
||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1609 AATTTGTCAGACCAGAAGAAGTAAAAGCAAAACTGGAAGCTCCTCTACCTCCTCCTCCTC 1668
Query 1903 AGCCTCAGCATCAGC--CA-C-A-A-GCTCAGACTCTTTCGCGGCCACCTCCAACTGCTC 1956
||||||||||||||| || | | | ||||||||||||||||||||||||||||| ||||
Sbjct 1669 AGCCTCAGCATCAGCATCAGCCACAAGCTCAGACTCTTTCGCGGCCACCTCCAACCGCTC 1728
Query 1957 TTCCACCACCACCACCTCTGGCCAAACCACCTCAC-GTTGTAGAACGTCTTCCTCTGCCT 2015
||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||
Sbjct 1729 TTCCACCACCACCACCTCTGGCCAAACCACCTC-CTGTCGTAGAACGTCTTCCTCTTCCT 1787
Query 2016 CCCCCTCCTCCTATAGCCCCTGAGGAACAAGAACCTCCCATTGTCACTCTTGATGATCTA 2075
|||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1788 CCCCCTCCTCCTCTAGTCTCTGAGGAGCAAGAACCTCCCATTGTCACTCTTGATGATCTT 1847
Query 2076 TTCAAGAAGACAAAAGCGATCCCCAGGATATATTACTTACCCTTGTCAGAGGAGCAAGTT 2135
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 TTCAAGAAGACAAAAGCAATCCCCAGGATATATTACTTACCCTTGTCAGAGGAGCAAGTT 1907
Query 2136 GCAGCTAAACTTGCAGCGAATAATAACAAGTGATCTTGCTGGTT 2179
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1908 GCAGCTAAACTTGCAGCTAATAATAACAAGTGATCTTGCTGGTT 1951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92940197800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5