BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39690.1
Length=2390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490751 jgi|Araly1|490751|fgenesh2_kg.7__184__AT4G39690.1 3184 0.0
> Ahg490751 jgi|Araly1|490751|fgenesh2_kg.7__184__AT4G39690.1
Length=2370
Score = 3184 bits (1724), Expect = 0.0
Identities = 2019/2155 (94%), Gaps = 45/2155 (2%)
Strand=Plus/Plus
Query 7 TTTTACTCACCGGAGGCTCCGAGTCTTCTCCGTCCGTCG-TAACA--TCTTCGCTCTCTC 63
|||| |||||||||||||||||||||||||||||||||| ||||| | |||||||| ||
Sbjct 1 TTTTGCTCACCGGAGGCTCCGAGTCTTCTCCGTCCGTCGTTAACATTTGTTCGCTCTATC 60
Query 64 GTTCGGCG-TTTGTATCACCAGA-GACGCGACGCGATAATGCTTCGGAAGTCGGTTCTCG 121
|||||||| ||| | |||| ||| || || ||||||||||||||||||||||||||||||
Sbjct 61 GTTCGGCGTTTTCT-TCACGAGAGGA-GCAACGCGATAATGCTTCGGAAGTCGGTTCTCG 118
Query 122 AGCTGTCTTCTCGTTTGTCAATAAAGAGATTCCCGAGGAATTTGGGAGCTCAGAGGTTTC 181
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGCTGTCTTCGCGTTTGTCAATAAAGAGATTCCCGAGGAATTTGGGAGCTCAGAGGTTTC 178
Query 182 ATTTGAGCTCTTCGAGAAATGCATCTACATCTGGTAAAAATGGTCTCCCTGGAGCTAAAC 241
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 179 ATTTGAGTTCTTCGAGAAATGCATCTACATCTGGTAAGAATGGTCTTCCTGGAGCTAAAC 238
Query 242 CCGTTGGGAAACCAGATGCCTCAAAAGTTGATCCTCCAAAAGTGA---CTCCT---CCTC 295
||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 239 CCGTTGGGAAACCAGATGCCTCAAAGGTTGATCCTCCAAAAGTGACTTCTCCTCCACCTC 298
Query 296 C--T-------CC---T--A-CTAAAGGAAATTCTTCAAAAGTGGTTATAGGAGGTGTTG 340
| | || | | |||||||||||||||||||||||||| |||||||| |||
Sbjct 299 CTGTGGGGAAACCAAGTGAATCTAAAGGAAATTCTTCAAAAGTGGTTGTAGGAGGTCTTG 358
Query 341 CAATCGCTGGGGCTTTTCTGGTAGCGTATCAGACTGGCTATTTGGATCAATATCTGGGGA 400
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 CGATCGCTGGTGCTTTTCTGGTTGCGTATCAGACTGGCTATTTGGATCAATATCTGGGGA 418
Query 401 AAGAACAGCAGAAATTAAGTGAGCGAATTCATTCTGATGCTCTAACTGA-AAAGCTGGAG 459
||||||||||||||||||| ||||||||||||||||||||| | ||| | |||| |||||
Sbjct 419 AAGAACAGCAGAAATTAAGCGAGCGAATTCATTCTGATGCTGTTACTAACAAAG-TGGAG 477
Query 460 GAGGCTCATCATTTGAATGTACCTTCCGGTGTTGAAGATTCTACTGAAAAAGATGGAAAA 519
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 478 GAGGCTCATCATTTGAATGTACCTTCCGGTGTTGAAGATTCTACTGAAAAGGATGGTCAA 537
Query 520 GTTGAAACGCAACCTCAAGTTACTCATTCTGAAGCTTCCGAGGGAGTGCAGAGTGACATA 579
||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 538 GTTGAAACGCAACCTGAAGTTACTCATTCTGAAGCTTCTGGGGGAATGCAGAGTGACATA 597
Query 580 GAACTGCAACCCGAGTCTGATCTATCATCTGACCGTTTTACATATATTTCTTCTAACCAA 639
||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 598 GAAGTGCAACCCGAGTCTGATCTATCATCTGAACGTTTTACATATATTTCTTCGAACCAA 657
Query 640 GAGGAG---ACACCTCAAGAAACTGTCATTGATAGAGCAGAGATAAACTTGCCTATTTCT 696
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 658 GAGGAGACCACACCTCAAGAAAGTGTCATTGATAGAGCAGAGAGAAACTTGCCTATTTCT 717
Query 697 GCATCTGAAGATTCAGGAGCTAAGCCGGACATGCCATCAGAAATTATTTCTGAGGCAGAA 756
| |||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 718 GAATCTGAAGATTCGGGAGTTAAGTCGGACATGCCCTCAGAAATTATTTCTGAGGCAGAA 777
Query 757 AGTGTGAAGTTGGAAGCTGTACCCAAACCTGGGGATAGTCCTATTATTGTTAATGCCCAG 816
||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||
Sbjct 778 AGTGTGAAGTTGGAAGCTGTACCCAAACCTGGGGACAGT--T-CTATTGTTAGTGCCCAG 834
Query 817 TCTAGTTCGGTTCATAGAGAAAGCGAAACGGAATCTGCTTCACCAAAGGATCCTGCCGCT 876
|||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||
Sbjct 835 TCTAGTTCGGCTCATAGAGAAAGTGAAACGGAATCTGCTACACCAAAGGATCCTTCCGCT 894
Query 877 CTAAAGACACCTGAGGATGGCATTGAGCGGGAAGTACAATTACCAGGTTCTCTCCTTAAG 936
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 895 GAAAAGGCACATGAGGATGGCATTGAGCGGGAAGTACAAATACCAGGTTCTCTCCTTAAG 954
Query 937 GAATATAATCTAGAAGGCAGTGATACTGAAAGCACTGGGTCCTCGTCAATAGGGGAGCAA 996
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 955 GAATACAATCTAGAAGGCAGTGATACTGAAAGCACTGGATCCCCGTCAATAGGGGAGCAA 1014
Query 997 ATAACTAAAGAAACTGAGGCCT-TTCCTAACTCAACCGAGGGGCTGAAAGATAGTTACAT 1055
| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 1015 CTGACTAAAGAAACTGAGG-CTCTTCCTAACTCAACCGAGGGGCTGAAAGATGGTTACAT 1073
Query 1056 GACTGAGGATGGAAAGTTGGTACTTGATTTTCTGGCTGCCATTCATGCAGCTGAGAAGCA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GACTGAGGATGGAAAGTTGGTACTTGATTTTCTGGCTGCCATTCATGCAGCTGAGAAGCA 1133
Query 1116 ACAGGCCCATTTAGATGCCCAGGTTTTTGCTGAAGAATTACGAGCCTTGAAGGAGAAGTA 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 ACAGGCCCATTTAGATGCCCAGGTTTTTGCTGAAGAATTACGAGCCTTGAAGGAGAAGTA 1193
Query 1176 TGAAAATGAGTTAAGAGACCTTAGGGCACGTGAGCTAATGCGTATAGAGGAGGCAGCAAT 1235
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1194 TGAAAATGAGTTGAGAGACCTTAGGGCACGTGAGCTAATGCGAATAGAAGAGGCAGCAAT 1253
Query 1236 ATTGGATAAGGAGCTAAAAAGAGAACGAACAAAAGCAGCAGCTGCTATTAAAGCAATCCA 1295
||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 1254 ATTGGATAAGGAGCTAAAAAGAGAAAGAACAAAAGCAGCCGCTGCTATCAAAGCAATCCA 1313
Query 1296 GGAGAGAATGGAAGATAAGCTCAAAGCTGAACTTGAACAAAAGGAAACTGAAGCGCAGTT 1355
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1314 GGAGAGAATGGAAGATAAGCTCAAAACTGAAATTGAACAAAAGGAAACTGAAGCGCAGTT 1373
Query 1356 GGCTTTGAGTAAAGCTGAAGAATTGGCAAAAGCTGAGATGATTTCG-ACAATTGCAAAAG 1414
||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 1374 GGCTTTGAGTAAAGCTGAAGAATTGGCAAAAGCTGAGATGATTGCGGA-AATTGCAAAAG 1432
Query 1415 AAAAGGCAGCACAGATTGAAAAAATGGCAGAGGCAGATCTTAATATAAAGGCACTGAGTA 1474
||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 1433 AAAAGGCAGCACAAATTGAAAAGATGGCAGAGGCAGATAGCAATATAAAGGCGCTGAGTA 1492
Query 1475 TGGCATTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCACAAGCTTGCAT 1534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGGCGTTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCACAAGCTTGCAT 1552
Query 1535 TGGGTGCACTTGCGCTGGATGATACACTCTCGAAAGGACTGCCAGTCCAAAAAGAAATCG 1594
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1553 TGGGTGCACTTGCGCTGGATGATACACTCTCGAAAGGACTGCCAATCCAAAAAGAAATCA 1612
Query 1595 ATACGCTTCAGACTTATCTTGAAGGGACTCATAAAGATTCAATCCTAGGCCTGGTATTAT 1654
||| ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1613 ATATGCTTCAGACTTATCTTGAAGGGACTCAGAAGGATTCAATCCTAGGCTTGGTATTAT 1672
Query 1655 CATCTCTTCCAGAAGAAGCACGATCCAATGGAACCGACACAGTGCTGCAATTGAATCAGA 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 CATCTCTTCCAGAAGAAGCACGATCCAATGGAACCGACACAGTGCTGCAATTGAATCAGA 1732
Query 1715 AGTTTGATACCTTGAAAGGAACACTTAGACATTTCAGTCTCATTCCACCTGGTGGCGGAG 1774
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1733 AGTTTGATACCTTGAAAGGAACACTTAGACACTTCAGTCTCATTCCACCTGGTGGCGGAG 1792
Query 1775 GCATCTTAGCACATTCCCTAGCACATGTAGCATCTTCGCTAAAGTTTAAAGAAGTGGATC 1834
| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 1793 GAATCTTAGCACATTCCCTAGCACAAGTAGCATCTTGGCTAAAGTTCAAAGAAGTGGATC 1852
Query 1835 AAGCTAATGGAGGCATCGAATCTGTAATTAAAAAGGTGGATAATTACTTGGCGGAAGGAA 1894
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1853 ACGCAAATGGAGGCATCGAATCTGTAATTAAAAAGGTTGATAATTACTTGGCGGAAGGAA 1912
Query 1895 AACTAGCAGAAGCAGCAGCAACACTAGAAGAAGGTGTTAAAGGAAGTAAAGCAGAGGAAA 1954
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1913 AACTAGCAGAAGCAGCAGCTGCGCTAGAAGAAGGTGTTAAAGGAAGTAAAGCAGAGGAAA 1972
Query 1955 TAGTGAGTGATTGGGTGCGACGTGCAAGAAACAGAGCCATTACAGAACAAGCTCTTACGC 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 TAGTGAGTGATTGGGTGCGACGTGCAAGAAACAGAGCCATTACAGAACAAGCTCTTACGC 2032
Query 2015 TTCTCCAATCTTATGCAACTTGTGTTAGCCTCACTTGAATCCCTTCCAGATCTTCCATTG 2074
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 2033 TTCTCCAATCTTATGCAACTTGTGTCAGCCTCACTTGAATCCCTCCCAGATCTTCCATTG 2092
Query 2075 AGGTACATTGCTTCTTCttttt-tttt--AATTCGATACTGAGATTCCTGGAGTT 2126
||||||||||||| || ||||| |||| |||||||||| |||||||||||||||
Sbjct 2093 AGGTACATTGCTT-TT-TTTTTATTTTGGAATTCGATACAGAGATTCCTGGAGTT 2145
Score = 283 bits (153), Expect = 4e-75
Identities = 206/231 (89%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 2159 TTTTTCTGGTGAAGAGGAAGAATTACGATTCTCTATTCCAATGTTTATGTTTGAATCACA 2218
||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2145 TTTTTTTGGTCAAGAGGAAGAATTACGATTCTCTATTCCAATGTTTATGTCTAAATCACA 2204
Query 2219 GCTGTTCATGTTATCTGAATTAGAATGTTACCAGAAAGTTTGA-TACAAAAATAAGATCG 2277
|||||| ||||||||||| ||||||||||| || ||||||||| | |||||||||||| |
Sbjct 2205 GCTGTTGATGTTATCTGAGTTAGAATGTTAACA-AAAGTTTGAAT-CAAAAATAAGATTG 2262
Query 2278 AATCTCACGAATTTATGATATTTGTCTGGAATGGGATCAGGAGATGTTGATTTGGTGATG 2337
||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||
Sbjct 2263 AATCTCACGAATTTATGATTTTTGTCTACATTGGGATCAGAAGATGTTGATTTGGTGATT 2322
Query 2338 AATGTTGTTGCTGTACTGATGTGGCATCATGTGGTATATCACTGGGCTTAT 2388
| |||||||| | | |||||||||||||| |||| ||||||| |||||||
Sbjct 2323 ATTGTTGTTG-T--AGTGATGTGGCATCATATGGTGTATCACTAGGCTTAT 2370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90045339180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5