BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39700.1

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888192 jgi|Araly1|888192|Al_scaffold_0007_178                     815    0.0  


> Ahg888192 jgi|Araly1|888192|Al_scaffold_0007_178
Length=477

 Score =  815 bits (441),  Expect = 0.0
 Identities = 465/477 (97%), Gaps = 0/477 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGTTGGGGGAACGTTGGAGTATATATCAGAGCTAATAGGGAATGGAGGAAGCCAT  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAGTTGGAGGAACGTTGGAGTATATATCAGAGCTAATAGGGAATGGAGGAAGCCAT  60

Query  61   AGTTATGGAAAAAGGAAGAAGAAGAAGCAGTTTCAAACAGTAGAGCTCAAAGTTAGGATG  120
            ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct  61   AGTTATGGAAAGAGGAAGAAGAAGAAGCTGTTTCAAACAGTAGAGCTCAAAGTTAGAATG  120

Query  121  GATTGTGATGGTTGTGTCCTCAAAATCAAAAACTCTCTTTCTTCTCTAAAAGGAGTGAAA  180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  GATTGTGATGGTTGTGTCCTCAAAATCAAAAACTCTCTTTCTTCCCTAAAAGGAGTGAAA  180

Query  181  ACGGTGGAGATAAACAAGAAGCAACAGAAGGTGACAGTGAGTGGTTATGCGGATGCGAGC  240
            || |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  ACAGTGGAGGTAAACAAGAAGCAACAGAAGGTGACAGTGAGTGGCTATGCGGATGCGAGC  240

Query  241  AAGGTGCTGAAGAAGGCTAAAGCGACGGGGAAGAAAGCCGAGATATGGCCGTACGTACCG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAGGTGCTGAAGAAGGCTAAAGCGACGGGGAAGAAAGCCGAGATATGGCCGTACGTACCG  300

Query  301  TACAACTTGGTGGCTCAGCCGTACATAGCTCAGGCTTATGATAAGAAAGCACCGCCTGGT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TACAACTTGGTGGCTCAGCCGTACATAGCTCAGGCTTATGATAAGAAAGCACCGCCTGGT  360

Query  361  TACGTCAGAAAAGTTGACCCAAACGTCACCACCGGGACGATGGCTGTTTACTACGATGAC  420
            |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  361  TACGTCAGAAAAGTGGACCCAAACGTCACCACCGGGACAATGGCCGTTTACTACGATGAC  420

Query  421  CCTTCTTATACTTCTTTGTTTAGTGATGATAATCCTAATGCTTGCTCTATTATGTAG  477
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  421  CCTTCTTATACTTCTTTGTTTAGTGATGATAATCCTAACGCTTGCTCTATTATGTAG  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17284481817


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5