BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39710.1
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490753 jgi|Araly1|490753|fgenesh2_kg.7__186__AT4G39710.1 1251 0.0
> Ahg490753 jgi|Araly1|490753|fgenesh2_kg.7__186__AT4G39710.1
Length=790
Score = 1251 bits (677), Expect = 0.0
Identities = 753/790 (95%), Gaps = 4/790 (1%)
Strand=Plus/Plus
Query 1 GGCTTCACGCAGATAAGGAAGCAGAGATCGAAACGAAGACTCAAAGAAGAATGGCGATTT 60
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |
Sbjct 1 GGCTTCACGCAGATAAGGAAGCAGAGAACGAAACGAAGAATCAAATAAGAATGGCGATGT 60
Query 61 CTACTTTAACACTCACACAATCTCTCTATACACGTTCCTTCAGACCAACCAtcttctttt 120
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 61 CTACTTTAACACTTACACAATCTCTTTATACACGTTCCTTCAGACCCACCATCTTCTCTT 120
Query 121 cttcttcttcttcctcgtccttttcgtgtctctgttcttcttcctccGATTGCGAGCCGA 180
|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 121 CTTCTTCTTCTTCCTCGTCCTTCTCGTGTCTCTG---TTCTTCCTCCGACTGCGAGCCGA 177
Query 181 AACTCTCCGTCAAGAAACGCGTTTTCGGAGTGGGTTTAGGGTTCCTAGCTTCTTCGATTC 240
|||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 178 AACTCTCCGTAAAGAAACGCGTTTTCGGAGTGGGTTTAGGGTTATTAGCTGCTTCGATTC 237
Query 241 TCTCTCTAACGCCTCTGGACGCAGACGCCACGAGGATTGACTACTACGCCACTGTAGGAG 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 TCTCTCTGACGCCTCTGGACGCAGACGCCACGAGGATTGACTACTACGCCACTGTTGGAG 297
Query 301 ATCCTCTCTGCGAATACAGCTACGCAAAATCAGGACTTGGATTTTGCGATCTCGATGTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATCCTCTCTGCGAATACAGCTACGCAAAATCAGGACTTGGATTTTGCGATCTCGATGTTG 357
Query 361 GATTTGGTGATGAAGCCCCTCGTGGCGTACTCGTCAATATCCATTACACGGCGAGGTTTG 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 GATTTGGTGATGAAGCCCCTCGTGGCGTTCTCGTCAATATCCATTACACGGCGAGGTTTG 417
Query 421 CAGATGGAACGTTGTTTGACAGTAGCTATAAGCGTGCAAGACCACTTACTATGCGAATTG 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAGATGGAACATTGTTTGACAGTAGCTATAAGCGTGCAAGACCACTTACTATGCGAATTG 477
Query 481 GAGTCGGCAAGGTAATTAGGGGACTAGACCAGGGGATTCTTGGAGGCGAAGGAGTACCTC 540
| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 478 GGGTCGGCAAGGTTATTAGGGGTCTAGACCAAGGGATTCTTGGAGGCGAAGGAGTACCTC 537
Query 541 CTATGCGAGTAGGCGGAAAGCGTAAACTTCAGATTCCACCTAAGTTAGCTTATGGACCAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTATGCGAGTAGGCGGAAAGCGTAAACTTCAGATTCCACCTAAGTTAGCTTATGGACCAG 597
Query 601 AGCCTGCAGGATGCTTTTCTGGTGACTGCAACATACCTGGCAATGCAACTTTGCTCTATG 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 AGCCTGCAGGATGCTTTTCTGGTGACTGTAACATACCTGGCAATGCAACTTTGCTCTATG 657
Query 661 ATATCAACTTTGTTGAGATCTACCCAGGAAGTAATACAAGATGAAGCCAACTCCAATCC- 719
||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 658 ATATCAACTTTGTTGAGATCTACTCGGGAAGTAACACAAGATGAAGCCAACTCCAATTTT 717
Query 720 CGTTTGGTAAAGGAACAAACAACTATGTATGTGATGTATATCACCAGGTGATTACTTTTG 779
||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 718 CGTTTGGTAAAGGAAGAAACAACTATGTATATGATGTATATCACCAGGTGATTCCTTTTG 777
Query 780 ACAAGCTTCA 789
|| | |||||
Sbjct 778 ACCATCTTCA 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33891273213
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5