BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39720.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490754 jgi|Araly1|490754|fgenesh2_kg.7__187__AT4G39720.1 1493 0.0
> Ahg490754 jgi|Araly1|490754|fgenesh2_kg.7__187__AT4G39720.1
Length=1046
Score = 1493 bits (808), Expect = 0.0
Identities = 982/1062 (92%), Gaps = 28/1062 (3%)
Strand=Plus/Plus
Query 9 AACTCAAGTATCCATTCTCACCTCTAAATCAATTTCTTACGTTTTCTCTCGTC-AAA-GT 66
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 1 AACTCGAGTATCCATTCTCA--TCTAAATCAATTTCTTACGTTTTCTCTCGTCAAAATAT 58
Query 67 Ctttt--tttCTTTG-TCACGAGATGGAGTCCGGTAATAGTAGTAGCATGCAATCTTCAA 123
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTTTTCCTTTTTTTGATCACGAGATGGAGTCCGGTAATAGTAGTAGCATGCAATCTTCAA 118
Query 124 GCGGCGGTGGCGGAGGAGGAGAAGAAGAATACGATTCACGCGCCGCAGATCAATCCATTT 183
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 119 GCGGCGGTGGCGGAGGAGGAGAAGAAGAGTACGATTCACGCGCCGCTGATCAATCCATCT 178
Query 184 CCGCCTTCTTCGACCACCACAACAACCACGTGTCATCTATACCCACGCCGCAACAAAACC 243
|||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 179 CCGCCTTCTTCGACCAGCACAACCACCACGTGTCATCTTTACCCCCGCCGCAACAAAACC 238
Query 244 ATCGCAACCTCCTCCATTTCGACCATAACAACAACAACTCTCTAATACCACCAAACTACT 303
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACCTCAACCTCCTCCATTTCGACCATAACAACAACAACTCTCTAATACCACCAAACTACT 298
Query 304 T------TAACAACAACACGTTCTTACCCGTAAACCAACAACCCGACCCGATTTCTCAAC 357
| |||||||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 299 TCAACAACAACAACAACACGTTCTTACCCGTAAACCAACAACTCGACCCGATATCCCAAC 358
Query 358 TCGACCTCCGAACCTCCTCCGCCACGTCATCACTCCCTCCTACTAACAATATAGGAGTAA 417
|||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 359 CCGACCTCCGAACTTTCTCATCCACGTCATCACTCCCTCCTCCTAACAATATAGGAGTAA 418
Query 418 TCAAGAAAACAAAGAAAAGATCTCGAGCATCAAGAAGAGCACCAACGACGGTTCTAACGA 477
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 TCAAGAAAACAAAGAAAAGATCACGAGCATCAAGAAGAGCACCAACGACGGTTCTAACGA 478
Query 478 CGGATACTTCCAACTTCCGAGCGATGGTTCAAGAGTTTACCGGAATCCCAGCTCCACCGC 537
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 CGGACACTTCCAACTTCCGAGCGATGGTTCAAGAGTTTACCGGAATCCCAGCTCCACCTC 538
Query 538 TATTCAACAACAACTCCATCGTGAACACCACGCGCCTCAACACTTTCCTCGGCTTGTCTT 597
||||||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 539 TATTCAACAAC---TCCGTCGTGAACACCACGCGTCTCAACACCTTCCTCGGCTTGTCTT 595
Query 598 CTTCTTCGCCAAACACTTACAACACCAACAATCTCTTGTTACGACCGTTTGCTCAAAAAC 657
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 596 CTTCTTCGCCAAACACGTACAACACCAACAGTCTCTTGTTACGACCGTTTGCTCAAAAAC 655
Query 658 TCAC-TCCAGCGACTCCTCTCTTATCCGGATCACAAATTCAGCAATATCAAAACCCTAAC 716
|||| || | || ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 656 TCACCTCAA-CGTCTCCTCTTTTATCCGGATCACAGATTCAGCAATATCAAAACCCTAAC 714
Query 717 AACGGTTTCGAGGATATGAATCTGCAAGCTCTTCTTCAAGCTCATATTTCAAACCCTAGA 776
|||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 715 AACGGTTTCGAGAATGTGAATCTGCAAGCTCTTCTTCAAGCTCAAATTTCAAACCCTAGA 774
Query 777 AGCAATGAGCACGATCAGTTTGGTCTTGGTATGATGCAGACTCCATCTACTAATCCTCCT 836
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 775 AGCAATGAGCATGATCAGTTTGGCCTTGGTATGATGCAGAGTCCATCTACTAATCCTCCT 834
Query 837 ACTACAACGGCAGCGGCTAACGGGAACATAAACACCGGTGATAATGGAAGCTACGGTGGC 896
|| ||||||||||| |||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 835 ACGACAACGGCAGCAGCTAACGGGAACATAACCACTGGTGATACTGGAAGCTACGGTGGT 894
Query 897 TCCGATCATGAACATAATAATGACGGTACTTGGTTATCTTCGTCTTCCGACCAGAGAACA 956
||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 895 TCCGATCATGATCATAATAATGACGGTACTTGGTTATGTTCATCTTCCGACCAGAGAACA 954
Query 957 TAAATATATTTATGTATAGTCCAAGTCCGAAATCAAAGCTAATCTCTTGACATGATTACT 1016
||||||||| ||||| |||||| || |||||||||||||||||||||||||| |
Sbjct 955 TAAATATAT--ATGTA--GTCCAA-----AA-TCAAAGCTAATCTCTTGACATGATTATT 1004
Query 1017 CAACAAATTAAACATAGCACATATAGCATGATGAAGTTACTC 1058
|||||||||||||||||||||||||| |||||||||||||||
Sbjct 1005 CAACAAATTAAACATAGCACATATAGGATGATGAAGTTACTC 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5