BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39740.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490756 jgi|Araly1|490756|fgenesh2_kg.7__189__AT4G39740.1 1578 0.0
> Ahg490756 jgi|Araly1|490756|fgenesh2_kg.7__189__AT4G39740.1
Length=1119
Score = 1578 bits (854), Expect = 0.0
Identities = 1036/1120 (93%), Gaps = 28/1120 (3%)
Strand=Plus/Plus
Query 17 AAACAGAGAAGAAGAACCAAATTCAATGCTTCCTTGTCGCCGTCTTGTTCTGTCCTGCAA 76
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1 AAACAGAGAAGAAGAACCAAATTCAATGCTTCCTTGTCGCCGGCTTGTTCTTTCCTGCAA 60
Query 77 GAATCAAGC-TGCCAGTTTTCTCCGAAGGTGTGGACCATCGAAACGAATTCAATCAGTCA 135
||| || | ||| |||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 61 AAATGGTGCAT-CCAATTTTCTCCGAAGGTCTGGACCATCGAAACGAATTCAGTCATTCA 119
Query 136 ATTACTGTAAATCAACAAGACAGGGCCATGAAATTCCAGATGTGAAACCTCTTTTTCCCA 195
||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct 120 ATTACAGTAAATCAACAAGACAGGGCCATGAAATTCCAGATGTTAACCCTCTATTTCCTA 179
Query 196 CAGGAGGAGGAACTCAAGCTCCTTCTCGTTCTCGTGCTCGTTATGCTGTTCCTGCGATTC 255
|||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 180 TGGGAGGAGGAACTCAAGCTTCTTCTCGTTCTCGTGTTCGTTATGCTGTTCCAGCGATTG 239
Query 256 TACTTGGTTTTGCCGGATTCGTCGGCTTTCTTCATTACAACGACGAAAGGAGAGCAGTTC 315
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 240 TACTTGGTTTTGCCGGATTCATCACCTTTCTTCATTACAACGACGAAAGGAGAGCAGTTC 299
Query 316 CTAGAGGTCAAGCAAGCAGCAATAGCGGTTGTGGCTGCGGTTCTAATACAACTGTCAAAG 375
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 300 CTAGAGGTCAAGCAAGCAGCAATAGTGGTTGCGGATGCGGTTCTAATACAACTGTCAAAG 359
Query 376 GTCCGATTATCGGAGGTCCGTTTACGCTTGTGAGCACAGAAAACAAGATAGTCACAGAGA 435
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 GTCCAATTATCGGAGGTCCATTTACGCTTATGAGCACAGAAAACAAGATAGTCACAGAGA 419
Query 436 ATGACTTTTGTGGTAAATGGGTTCTACTCTACTTTGGATACTCTTTTTCCCCGGATGTTG 495
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 ATGACTTTTGTGGTAAATGGGTTCTACTCTACTTTGGATACTCGTTTTCCCCGGATGTTG 479
Query 496 GACCTGAGCAACTAAAGATGATGTCCAAAGCTGTTGATAAACTAGAGTCTAAACATAACG 555
|||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 GACCCGAGCAATTGAAGATGATGTCCAAAGCAGTTGATAAACTAGAGTCTAAACATAACC 539
Query 556 AGAAGATTCTGCCTGTCTTTGTCACTCTTGACCCTCAACGAGACACACCTTCTCATCTCC 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAAGATTCTGCCTGTCTTTGTCACTCTTGACCCTCAACGAGACACACCTTCTCATCTCC 599
Query 616 ACGCATACTTGAAAGAGTTTGATAGTAGAATACTAGGACTAACCGG-GACTGCAAGTGCA 674
||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 600 ACGCATACTTGAAAGAGTTTGATAGTAGAATACTAGGACTAACTGGAG-CTGCAAGTGCA 658
Query 675 ATGAGGCAAATGGCACAAGAGTATCGTGTCTACTTCAAGAAGGTTCAAGAGGACGGAGAA 734
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 ATGAGGCAAATGGCACAAGAGTATCGTGTCTACTTCAAGAAGGTTCAAGAAGACGGAGAC 718
Query 735 GATTATCTCGTTGATACTTCTCACAACATGTACTTGATAAATCCGAAGATGGAGATTGTG 794
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 GATTATCTCGTTGATACTTCTCACAACATGTACTTGATGAATCCGAAGATGGAGATTGTG 778
Query 795 AGGTGCTTTGGGGTTGAGTATAATCCAGACGAGCTCTCACAAGAGCTTCTTAAAGAAGTT 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGGTGCTTTGGGGTTGAGTATAATCCAGACGAGCTCTCACAAGAGCTTCTTAAAGAAGTT 838
Query 855 GCTTCTGTTTCACAGTGACCCATTTTGACCAAACACTAAAGAGAGAAACACTAGGATGCT 914
| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACATCTGTTTCACAATGACACATTTTGACCAAACACTAAAGAGAGAAACACTAGGATGCT 898
Query 915 CTTTGATTGTTTTCTTCAATTCGTGA-tttt-tttAAAGACGATTTTGTTAATCCGTCTC 972
||||||||||||||||||||| |||| |||| ||| | |||||||||| | || |
Sbjct 899 CTTTGATTGTTTTCTTCAATTGGTGAATTTTATTTC--GTCGATTTTGTT--T--GT-TA 951
Query 973 TTATTCTTGAAAAAATGAAAATTAGATGGTAGATCCTGCAAAGTCGAAAAAATCCAAAAT 1032
|| ||| | || ||||||||||||||| |||||||||||||||||||||||
Sbjct 952 --ATCCTTC------T-AA--TTAGATGGTAGATCCAGCAAAGTCGAAAAAATCCAAAAT 1000
Query 1033 TTCCCATATAGTAATATTTTATTCTTCAATGTTATTTTTGTT--GTTAGAGTTGTTTC-T 1089
||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1001 TTCGCATATAGTAATTTTTTATTCTTCAATGTTATTTTTTTTTTGTTAGAGTTGTTTCCT 1060
Query 1090 TTT-ACTTATTTACAAATTTTCTTTCAACGTTTGTAACAT 1128
||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1061 TTTTACTTATTTTCAAATTTTCTTTCAAAGTTTGTAACAT 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5