BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39745.1 Length=762 Score E Sequences producing significant alignments: (Bits) Value Ahg490757 jgi|Araly1|490757|fgenesh2_kg.7__190__AT4G39745.1 593 5e-169 > Ahg490757 jgi|Araly1|490757|fgenesh2_kg.7__190__AT4G39745.1 Length=795 Score = 593 bits (321), Expect = 5e-169 Identities = 383/413 (93%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 352 CCCGAACCTCCGGTTTTCAACGTTAAGAAACTAGAGAAATCTCGCCATTTCGAGATCATG 411 |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| Sbjct 385 CCCGAACCTCCGGTTTTCAACGTTAAGAAATTCGAGAAATCTCGTCATTTCGAGATCATG 444 Query 412 TTGACATCAAAGAACCCAACCTCCACCATGTGGGTGACCTACAAAGGTCTCGTCTCACTG 471 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 445 TTGACATCCAAGAACCCAACCTCCACCATGTGGGTGACCTACAAAGGTCTAGTCTCTCTG 504 Query 472 ACGTACAAAAACAAGAACCTAGGCCAAGGGAATTTCCCAGAGCTGTCATTAGCCGTGTCG 531 | |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 505 ATGTACAAAAACAAGAACCTAGGCCAAGGGAATTTCCCGGAGCTGTCACTAGCCGTGTCC 564 Query 532 GGATCCCATACGGTCAACCTAAAGCTGGATAGG-TCCATGAACGCGGCTGTTCTGCCGCC 590 |||||||||||||| ||||||||||| || ||| |||| ||| |||||| | |||||||| Sbjct 565 GGATCCCATACGGTTAACCTAAAGCTAGA-AGGGTCCAAGAATGCGGCTCTGCTGCCGCC 623 Query 591 TGAAGTGGTTAGTTTGGTATTGACGATGGGGCT-AGATGCGGGTTTCGGCACGGGCTTGG 649 ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||| Sbjct 624 TGAAGTGGTTAGTTTGGTATTGACGATGGGGCTCA-ATGCGGGATTCGGCACGGGATTGG 682 Query 650 TGAAACGAGCCAAGGAAGTGGCCGTAACATGTGACATTAAAGTAAATGGATTATTAGATG 709 ||||||| | |||||||||||| || |||||||| ||||||||||| ||||||||||||| Sbjct 683 TGAAACGGGACAAGGAAGTGGCAGTGACATGTGATATTAAAGTAAAAGGATTATTAGATG 742 Query 710 CGCACAAGGTTGAGATTGTGTCGGAGAGTTGTGAGAGTGAGTTCACTAAATAA 762 |||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 743 CGCAGAAGGTTGAGATTGTGTCGGAGAGTTGTGAGAGTGAGTTCATTAAATAA 795 Score = 433 bits (234), Expect = 1e-120 Identities = 318/356 (89%), Gaps = 15/356 (4%) Strand=Plus/Plus Query 1 ATGGACGGGCCACCGCTACCTCCGACCTCTACCTCCACCTCCACCTCCATTAATGACAAT 60 ||||| |||||||||||||||||| ||||||||||||||| | ||||||||| Sbjct 1 ATGGAGGGGCCACCGCTACCTCCG------ACCTCCACCTCCACCGGC---AATGACAAT 51 Query 61 GAAAACAAGACCGGTAATGATCCTTCTACGTGGCATCGTCCCACCAGCAGCCTCCCTCAA 120 |||||||| |||||||||| | |||||||||||||||||||||||| ||||||||| ||| Sbjct 52 GAAAACAAAACCGGTAATGCTTCTTCTACGTGGCATCGTCCCACCACCAGCCTCCCCCAA 111 Query 121 -TTCCCTTCCTCTGCCTCCCAAGTTTCTTCACCTCCACAACATTTACGTAATCGTTCTTT 179 || ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 112 CTT-CCTTCATCTGGCTCCCAAGTTTCTTCACCTCCACAACATTTACGTAATCATTCTTT 170 Query 180 GAATCTCTCCCCACACGTATCACCTTCTTCGCCGCCTCCTCCT---GATCCAATCCCAGA 236 ||||||||||||||| ||| | ||||||| || ||||||||| ||||||||||||| Sbjct 171 AAATCTCTCCCCACACTTATTATCTTCTTCTCCTCCTCCTCCTCCTGATCCAATCCCAGC 230 Query 237 GATCGAGACCTACGTAGTGCATGTTCCAAGGGATCAGGTCTATTGGATCCCTCCCCCGGA 296 ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| Sbjct 231 GATCGAGACCTACGTAGTGCAGGTTCCGAGGGATCAGGTCTATTGGACCCCTCCCCCGGA 290 Query 297 TAATGCA-GGATCGTCGAAAGACGCAGGAATAGCGATCCGGGGAGAAATAATAAAA 351 ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 291 TAATGCAAGGATCGTCGAAAGACGCAGGAATAGCGAGCTGGGGAGAAATAATAAAA 346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28096589829 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5