BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39745.1
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490757 jgi|Araly1|490757|fgenesh2_kg.7__190__AT4G39745.1 593 5e-169
> Ahg490757 jgi|Araly1|490757|fgenesh2_kg.7__190__AT4G39745.1
Length=795
Score = 593 bits (321), Expect = 5e-169
Identities = 383/413 (93%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 352 CCCGAACCTCCGGTTTTCAACGTTAAGAAACTAGAGAAATCTCGCCATTTCGAGATCATG 411
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 385 CCCGAACCTCCGGTTTTCAACGTTAAGAAATTCGAGAAATCTCGTCATTTCGAGATCATG 444
Query 412 TTGACATCAAAGAACCCAACCTCCACCATGTGGGTGACCTACAAAGGTCTCGTCTCACTG 471
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 445 TTGACATCCAAGAACCCAACCTCCACCATGTGGGTGACCTACAAAGGTCTAGTCTCTCTG 504
Query 472 ACGTACAAAAACAAGAACCTAGGCCAAGGGAATTTCCCAGAGCTGTCATTAGCCGTGTCG 531
| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 505 ATGTACAAAAACAAGAACCTAGGCCAAGGGAATTTCCCGGAGCTGTCACTAGCCGTGTCC 564
Query 532 GGATCCCATACGGTCAACCTAAAGCTGGATAGG-TCCATGAACGCGGCTGTTCTGCCGCC 590
|||||||||||||| ||||||||||| || ||| |||| ||| |||||| | ||||||||
Sbjct 565 GGATCCCATACGGTTAACCTAAAGCTAGA-AGGGTCCAAGAATGCGGCTCTGCTGCCGCC 623
Query 591 TGAAGTGGTTAGTTTGGTATTGACGATGGGGCT-AGATGCGGGTTTCGGCACGGGCTTGG 649
||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||
Sbjct 624 TGAAGTGGTTAGTTTGGTATTGACGATGGGGCTCA-ATGCGGGATTCGGCACGGGATTGG 682
Query 650 TGAAACGAGCCAAGGAAGTGGCCGTAACATGTGACATTAAAGTAAATGGATTATTAGATG 709
||||||| | |||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 683 TGAAACGGGACAAGGAAGTGGCAGTGACATGTGATATTAAAGTAAAAGGATTATTAGATG 742
Query 710 CGCACAAGGTTGAGATTGTGTCGGAGAGTTGTGAGAGTGAGTTCACTAAATAA 762
|||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 743 CGCAGAAGGTTGAGATTGTGTCGGAGAGTTGTGAGAGTGAGTTCATTAAATAA 795
Score = 433 bits (234), Expect = 1e-120
Identities = 318/356 (89%), Gaps = 15/356 (4%)
Strand=Plus/Plus
Query 1 ATGGACGGGCCACCGCTACCTCCGACCTCTACCTCCACCTCCACCTCCATTAATGACAAT 60
||||| |||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1 ATGGAGGGGCCACCGCTACCTCCG------ACCTCCACCTCCACCGGC---AATGACAAT 51
Query 61 GAAAACAAGACCGGTAATGATCCTTCTACGTGGCATCGTCCCACCAGCAGCCTCCCTCAA 120
|||||||| |||||||||| | |||||||||||||||||||||||| ||||||||| |||
Sbjct 52 GAAAACAAAACCGGTAATGCTTCTTCTACGTGGCATCGTCCCACCACCAGCCTCCCCCAA 111
Query 121 -TTCCCTTCCTCTGCCTCCCAAGTTTCTTCACCTCCACAACATTTACGTAATCGTTCTTT 179
|| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 112 CTT-CCTTCATCTGGCTCCCAAGTTTCTTCACCTCCACAACATTTACGTAATCATTCTTT 170
Query 180 GAATCTCTCCCCACACGTATCACCTTCTTCGCCGCCTCCTCCT---GATCCAATCCCAGA 236
||||||||||||||| ||| | ||||||| || ||||||||| |||||||||||||
Sbjct 171 AAATCTCTCCCCACACTTATTATCTTCTTCTCCTCCTCCTCCTCCTGATCCAATCCCAGC 230
Query 237 GATCGAGACCTACGTAGTGCATGTTCCAAGGGATCAGGTCTATTGGATCCCTCCCCCGGA 296
||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 231 GATCGAGACCTACGTAGTGCAGGTTCCGAGGGATCAGGTCTATTGGACCCCTCCCCCGGA 290
Query 297 TAATGCA-GGATCGTCGAAAGACGCAGGAATAGCGATCCGGGGAGAAATAATAAAA 351
||||||| |||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 291 TAATGCAAGGATCGTCGAAAGACGCAGGAATAGCGAGCTGGGGAGAAATAATAAAA 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28096589829
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5