BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39756.1 Length=1195 Score E Sequences producing significant alignments: (Bits) Value Ahg327926 jgi|Araly1|327926|fgenesh1_pm.C_scaffold_7000153 1543 0.0 Ahg942435 jgi|Araly1|942435|scaffold_602979.1 361 8e-99 Ahg327005 jgi|Araly1|327005|fgenesh1_pm.C_scaffold_6002225 111 9e-24 Ahg943935 jgi|Araly1|943935|scaffold_700164.1 82.4 7e-15 Ahg944135 jgi|Araly1|944135|scaffold_700364.1 65.8 7e-10 Ahg931168 jgi|Araly1|931168|scaffold_303625.1 63.9 3e-09 > Ahg327926 jgi|Araly1|327926|fgenesh1_pm.C_scaffold_7000153 Length=2595 Score = 1543 bits (835), Expect = 0.0 Identities = 1035/1130 (92%), Gaps = 19/1130 (2%) Strand=Plus/Plus Query 1 ATGGATTCCGAAGCCGAACCACCGCAGGAAAAGAAGAAACCAAATTCATGTCCGTCGTTT 60 ||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 1480 ATGGATTCCGAAGTCGAACCATCGCAGAAAAAGAAGAAACCAAATTCATCTCCGTCGTTT 1539 Query 61 TTGTCCCTTCCTGAAGAAATCCTTGTAAACTGTTTAGCCCGCATACCGAAATCGTACTAC 120 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1540 GTGTCCCTTCCTGATGTAATCCTTGTAAACTGTTTAGCCCGCATACCGAAATCGTACTAC 1599 Query 121 CCGAAACTCTCCTTAGTCTGCAAGAGCTTCTGCTCTCTCATCTTATCCATGGAACTTTAC 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1600 CCGAAACTCTCCTTAGTCTGCAAGAGCTTCTGCTCTCTCATCTTATCCATGGAGCTCTAT 1659 Query 181 GTGGAGCGATTGTACCTTGGTACACATGAAGACGTCCTTCACGTCTGCTTACAGTTGCCC 240 || ||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||| Sbjct 1660 GTAGAGCGATTGTACCTTCGAAGACATGAAGACGTCTTTCACGTCTGCTTACAGTTGCCC 1719 Query 241 GATCGTCGTCTTCCTTCATGGTTTAGTCTCTGGACTAAACCGGATCAAACCCTAACCAAC 300 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1720 GATCGTCGTCTTCCCTCATGGTTTAGTCTCTGGACTAAACCGGATCAAACCCTAACCAAT 1779 Query 301 GACATTGGGAAGAAGAAAAAGTCCACTAGAAATACTTTGTTGGTACCAATACCTTCTTCT 360 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1780 GACATCGGGAAGAAGAAAAAGTCTACTAGAAATACTTTGTTGGTACCAATACCTTCTTCT 1839 Query 361 TATTCTCCTCGTGTACCAATGTTCATCGGTGAGATTGGTTCAGAATTATACGCTATTAGC 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1840 TACTCTCCTCGTGTACCAATGTTCATCGGTGAGATTGGTTCAGAATTATACGCTATTAGC 1899 Query 421 AAACATAATACTCCATCCTCCGTCATGTGGGTTCGTGATAAGACTAGTATTTATGCCTGG 480 |||||||||| ||| ||||| ||||||||||||||| |||||| || || || |||||| Sbjct 1900 AAACATAATAGTCCGTCCTCGGTCATGTGGGTTCGTAATAAGAGTACTAACTACGCCTGG 1959 Query 481 CGTAAAGCCCCTAGTATGACAGTAGCTCGTGCCAATGTTTTTGCTTATGTCATCAATGGG 540 |||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||| Sbjct 1960 CGTAAAGCCCCTAGCATGACAGTAGCTCGAGCCAATGTTTTTGCTTGTGTAATCAATGGG 2019 Query 541 AAAATATACGTAATGGGAGGTTGTGCCGCAGATGAATCTAA-GTATTGGGCTGAGGTATT 599 |||||||||||||||||||||||||| ||||||||||| || | ||||||||||||| || Sbjct 2020 AAAATATACGTAATGGGAGGTTGTGCAGCAGATGAATC-AATGAATTGGGCTGAGGTTTT 2078 Query 600 CGACCCAAAGACTCAAACTTGGAAACCTTTAACTGACCCGGGGGCCGAGTTACGCGTATC 659 |||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| |||| Sbjct 2079 CGACCCAAAGACTCAAACTTGGGAACCTTTACCTGACCCTGGGGATGAGTTACGCTTATC 2138 Query 660 TTCAATTATAGGTATGGCGGTGAGCGAAGGAAAGATTTATGTTAAGAACAGCTATGTGAA 719 |||| ||| | ||||| ||||| ||||||||||||||| |||||||| |||||| || Sbjct 2139 TTCATTTAAAACTATGGAGGTGATCGAAGGAAAGATTTACGTTAAGAAAAGCTATACGAT 2198 Query 720 GGACTACGTTTATGATCCGGAAGAAGATAAATGGGACGT-AGTTGCAAGCTCATTCATGA 778 |||||| |||||||||||||||||||||||||||||||| | | |||| ||||||||| Sbjct 2199 GGACTATGTTTATGATCCGGAAGAAGATAAATGGGACGTTA-TCACAAGAGCATTCATGA 2257 Query 779 TTGAGAGAAAGTGTGAGATAGAGAATGTATTGTACCGTTTTAGTAGACAAAGTTGTTCGT 838 ||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| Sbjct 2258 TTGAGAGAAAGTGTGAGATAGAGAATGTATTGTACCGTTGTCGTGGACAAAGTTGTTCGT 2317 Query 839 GGTATGACACAAAGCATAAAGAATGGAGAGATATCAAGGGTTTGGCTACATTGAATAGGC 898 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2318 GGTATGACACAAAGCAGAAAGAATGGAGAGATATCAAGGGTTTGGCTACATTGAATAGGT 2377 Query 899 GTCGTCGTTCT-AGTATTCTTGAAGTAGCGAAGTACGGTGACAAAGTCTTAATCTTGTGG 957 |||||||||| | | || |||||||||| || ||| |||||||| |||||||||||||| Sbjct 2378 ATCGTCGTTCTTA-TGTTATTGAAGTAGCTAACTACTGTGACAAACTCTTAATCTTGTGG 2436 Query 958 GAAATCTTTGCGAAGCCTTTTTATCAAAACAAGAGTATTTGGTGTGCGGTGATTGCGCTT 1017 |||||||||||||||| | ||| ||||| |||||||||||| |||||| | ||| Sbjct 2437 GAAATCTTTGCGAAGC------A--AAA-CAAGAATATTTGGTGTGCCGTGATTTCACTT 2487 Query 1018 GAAAAG-CGTAAA-ATTGATGAAATTTGGGGAAAGGTTAAGTGGGCTAGTATTGTGCTTA 1075 ||||| |||||| || ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2488 -AAAAGGCGTAAAGAT-GATGAAATTTGGGGAAAGGTTGAGTGGGCTAGTATTGTGCTTA 2545 Query 1076 CGGTTCCTAGATCATATGTTTTCTTGCGTTGTGAAGTGAAACCGGTTTGA 1125 |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2546 CGGTTCCTAGTTCATATGTTTTCTTGCGTTGTGAAGTGAAACCGGTTTGA 2595 > Ahg942435 jgi|Araly1|942435|scaffold_602979.1 Length=1136 Score = 361 bits (195), Expect = 8e-99 Identities = 803/1087 (74%), Gaps = 79/1087 (7%) Strand=Plus/Plus Query 50 GTCCGTCGTTTTTGTCCCTTCCTGAAGAAATCCTTGTAAACTGTTTAGCCCGCATACCGA 109 |||| ||||||||||| |||||| | |||||| | ||||||||||||| |||||| ||| Sbjct 44 GTCCATCGTTTTTGTCACTTCCTCATGAAATCGTCCTAAACTGTTTAGCTCGCATATCGA 103 Query 110 AATCGTACTACCCGAAACTCTCCTTAGTCTGCAAGAGC--TTCTGCTCTCTCATCTTATC 167 ||||||||| |||||||||||| |||||||||||| | ||| || ||||| || |||| Sbjct 104 GATCGTACTATCCGAAACTCTCCCTAGTCTGCAAGA-CATTTC-GCACTCTCCTCATATC 161 Query 168 CATGGAACTTTA-CGTGGAGCGATTGTACCTTGGTACACATGAAGA-CGTCCTTCACGTC 225 | || | | | ||||| |||| || ||||| || || ||| | | | |||| ||| Sbjct 162 TAAAGAGC-TCACCGTGGCGCGAGTGCACCTTAAAACCCACGAA-ACCTTTTTTCATGTC 219 Query 226 TGCTTACAGTTGCCCGATCGTCGTCTTCCTTC-ATGGTTTAGTCTCTGGACT-AAACC-G 282 ||||||||||| || ||| | | | |||||| || ||| | ||||||| | ||||| | Sbjct 220 TGCTTACAGTTACCTGATAGACCTAATCCTTCAAT-GTTCACCCTCTGGA-TAAAACCTG 277 Query 283 GATCAAACCCTAACCAA-CGACATTGGGAAGAA-GAAAAAGTCCACTAGAAATACTTTGT 340 | ||||| | ||||||| | || ||| |||||| | | | ||| || || ||||| || Sbjct 278 G-TCAAATCTTAACCAACCAAC-TTGAGAAGAACG-AGAGGTCTACCGGAGATACTCGGT 334 Query 341 TGGTACCAATACCTTCTTCTTATTCTCCTCGTGTACCA----ATGTTCATCGGTGAGATT 396 |||||| |||||||||||| |||| | || |||||| ||| |||| | | || Sbjct 335 TGGTACAAATACCTTCTTCATATTATTCTAAAGTACCACCTTATG-TCATTACT--G-TT 390 Query 397 GGTTCAGAATTATACGCTA-TTAGCAAACAT--AAT-ACTCCATCCTCCGTCATGTGGGT 452 ||||| |||| |||| | | ||| || | ||| | ||| |||||| |||||||||| Sbjct 391 GGTTCCGAATCGTACG-GACTCAGC-CAC-TGCAATGA-TCCGTCCTCCATCATGTGGGT 446 Query 453 TCGTGATAAGACTAGTATTTATGCCTGGCGTAAAGCCCCTAGTATGACAGTAGCTCGTGC 512 |||| | ||| | | ||| || |||||||||||||| | ||||| |||||||| || Sbjct 447 TCGTAAGAAGGGGACT-TTT-TG-TTGGCGTAAAGCCCCAAACATGACTGTAGCTCGAGC 503 Query 513 CAATGTTTTTGCTTATGTCATCAATGGGAAAATATACGTAATGGGAGGTTG-TGCCGCAG 571 ||| | |||| | ||| ||| |||||||||||| || ||||||||||| | || | Sbjct 504 CAAAGCCCTTGCGTGCGTCCTCAGTGGGAAAATATATGTCATGGGAGGTTGCAG-GGCTG 562 Query 572 ATGAATCTAAGTATTGG-GCTGAGGTATTCGACCCAAAGACTCAAACTTGGAAACCTTTA 630 ||||| | | ||||| | |||||| |||||| |||| ||||||||||| |||||||| Sbjct 563 ATGAACCCGTGAATTGGTG-TGAGGTTTTCGACATAAAGTCTCAAACTTGGGAACCTTTA 621 Query 631 ACTGACCCGGGGGCCGAGTTACGCGTATCTTCAATTA-TAGGTATGGCGGTGAGCGAAGG 689 ||||||| || | ||| | || | |||||||||| | | | | |||| | ||| Sbjct 622 CCTGACCCTGGCTCTGAGCTCCGTTTTTCTTCAATTAGAAAAT-TAGAGGTGTTCAAAGA 680 Query 690 AAAGATTTATGTTAAGAA-CAGCT-ATGTGAAGGACTAC-GTTTATGATCCGGAAGAAGA 746 |||| |||| ||| |||| || | | | ||| |||| | ||||||||||| |||||| Sbjct 681 AAAGCTTTACGTT-AGAAGCA-ATGAGGAGAAAGACT-CTGTTTATGATCCAAAAGAAGG 737 Query 747 TAAATGGGACGTAGTT-G-CAAGCTCATTCATGATTGAGA-GAAAGTGTGAGATAGAGAA 803 ||||| ||| || || | || | || |||| ||||| | | | | |||||||| Sbjct 738 TAAATCGGATGT-TTTAGAAAAAC-CA--CATG--TGAGATG-TACAAT-A-ATAGAGAA 788 Query 804 TGTAT-TGTACCGTTTTAGTAGACAAAGTTGTTCGTGGTATGACACAAAGCATAAAGAAT 862 ||| | |||| ||| || || ||| || || | ||||||||||||||| | ||||||| Sbjct 789 TGT-TGTGTATTGTTATAATAAACAGAGCTGCTGGTGGTATGACACAAATCGCAAAGAAT 847 Query 863 GGAGAGAT-ATCAAG-GGTTTGGCTACATTGAATAGGCGTCGTCGTTCTAGTATTCTTGA 920 | ||| | || || ||||| | || ||||| | || | ||| | | || |||| Sbjct 848 GTAGA-CTGGTC-AGAGGTTTAGATATGTTGAACCTGAATCTTGGTTGTGGAATGATTGA 905 Query 921 AGTAGCGAAGTACGGTGACAAAGTCTTAATCTTGTGGGA-AATCTTTGCGAAGCCT--T- 976 | |||| || || ||||| ||| |||||||||| ||||| || |||| | | | | Sbjct 906 AATAGCTAACTATGGTGAGAAACTCTTAATCTTATGGGACAA-GTTTGTTCATCGTGGTA 964 Query 977 TTTATCAAAAC-AAGAGTATTTGGTGTGCGGTGATTGCGCTTGAAAAGCGTAAAA-T--T 1032 || |||| || |||| |||||||||||||||||||||||||||||| ||| | | | Sbjct 965 CTTGTCAAGACAAAGA-TATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTGATGGTAGT 1023 Query 1033 GATGAAATTTGGGGAAAGGTTAAGTGGGCT-AGTATTGTGCTTACGGTTCCTAGATCATA 1091 |||||| |||||||||| || |||||||| | ||||||| | |||||| |||| ||||| Sbjct 1024 GATGAAGTTTGGGGAAACATTGAGTGGGCTGA-TATTGTGATGACGGTTTCTAGCTCATA 1082 Query 1092 TGTTTTC 1098 |||||| Sbjct 1083 CGTTTTC 1089 > Ahg327005 jgi|Araly1|327005|fgenesh1_pm.C_scaffold_6002225 Length=1077 Score = 111 bits (60), Expect = 9e-24 Identities = 151/192 (79%), Gaps = 17/192 (9%) Strand=Plus/Plus Query 917 TTGAAGTAGCGAAGTACGGTGACAAAGTCTTAATCTTGTGGGA-AATCTTTGCGAAGCCT 975 ||||| |||| || || |||| ||| |||||||||| ||||| || ||| | || Sbjct 872 TTGAAATAGCTAACTATGGTGGTAAACTCTTAATCTTATGGGACAA-GATTG-G--TCC- 926 Query 976 TTTTATCAA-AACAAGAGTATTTGGTGTGCGGTGATTGCGCTTGA-AAAGCGT-A--AAA 1030 || |||| || |||| |||||||||||| |||||||| |||| ||| ||| | | Sbjct 927 --TTCTCAAGAAAAAGA-TATTTGGTGTGCCTTGATTGCGATTGAGAAA-CGTGATGGTA 982 Query 1031 TTGATGAAATTTGGGGAAAGGTTAAGTGGGCTAGTATTGTGCTTACGGTTCC-TAGATCA 1089 |||||||| |||||||||| || |||||||||||||||||||||||||||| | | ||| Sbjct 983 TTGATGAAGTTTGGGGAAAAATTGAGTGGGCTAGTATTGTGCTTACGGTTCCGT-GCTCA 1041 Query 1090 TATGTTTTCTTG 1101 || ||||||||| Sbjct 1042 TACGTTTTCTTG 1053 > Ahg943935 jgi|Araly1|943935|scaffold_700164.1 Length=1232 Score = 82.4 bits (44), Expect = 7e-15 Identities = 95/118 (81%), Gaps = 10/118 (8%) Strand=Plus/Plus Query 985 AACAAGAGT-ATTTGGTGTGCGGTGATTGCGCTTGAAAAGCGTAA-AATTGATGAAATTT 1042 ||||||| | |||||||||||||||||||||||||||| || || ||| | || |||| Sbjct 1068 AACAAGA-TGATTTGGTGTGCGGTGATTGCGCTTGAAAGGCACAACAATCAA-GAGATTT 1125 Query 1043 GGGGAAAGGTTAAGTGGGCTAGTAT--TGTGCTTACGGTTCCTA-GA-TCATATGTTT 1096 |||| |||||| ||||| || | || ||||||||| || |||| || | ||| |||| Sbjct 1126 GGGGGAAGGTTGAGTGG-CTTG-ATGCTGTGCTTACTGTCCCTAAGACTTATAAGTTT 1181 > Ahg944135 jgi|Araly1|944135|scaffold_700364.1 Length=1670 Score = 65.8 bits (35), Expect = 7e-10 Identities = 41/44 (93%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 586 TGGGCTGAGGTATTCGACCCAAAGACTCAAACTTGGAAACCTTT 629 ||||| |||||||||||||||||||||||||||||| || |||| Sbjct 595 TGGGCAGAGGTATTCGACCCAAAGACTCAAACTTGGGAATCTTT 638 > Ahg931168 jgi|Araly1|931168|scaffold_303625.1 Length=225 Score = 63.9 bits (34), Expect = 3e-09 Identities = 57/68 (84%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 994 ATTTGGTGTGCGGTGATTGCGCTTGAAA-AGCGTAAAATTGATGAAATTTGGGGAAAGGT 1052 |||||||||||||||||||||||||||| | | | | ||| || |||||||||||| | Sbjct 70 ATTTGGTGTGCGGTGATTGCGCTTGAAAGA-CACAGTAGTGAAGAGATTTGGGGAAAGAT 128 Query 1053 TAAGTGGG 1060 | |||||| Sbjct 129 TGAGTGGG 136 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44603812890 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5