BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39756.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327926 jgi|Araly1|327926|fgenesh1_pm.C_scaffold_7000153 1543 0.0
Ahg942435 jgi|Araly1|942435|scaffold_602979.1 361 8e-99
Ahg327005 jgi|Araly1|327005|fgenesh1_pm.C_scaffold_6002225 111 9e-24
Ahg943935 jgi|Araly1|943935|scaffold_700164.1 82.4 7e-15
Ahg944135 jgi|Araly1|944135|scaffold_700364.1 65.8 7e-10
Ahg931168 jgi|Araly1|931168|scaffold_303625.1 63.9 3e-09
> Ahg327926 jgi|Araly1|327926|fgenesh1_pm.C_scaffold_7000153
Length=2595
Score = 1543 bits (835), Expect = 0.0
Identities = 1035/1130 (92%), Gaps = 19/1130 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCCGAAGCCGAACCACCGCAGGAAAAGAAGAAACCAAATTCATGTCCGTCGTTT 60
||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 1480 ATGGATTCCGAAGTCGAACCATCGCAGAAAAAGAAGAAACCAAATTCATCTCCGTCGTTT 1539
Query 61 TTGTCCCTTCCTGAAGAAATCCTTGTAAACTGTTTAGCCCGCATACCGAAATCGTACTAC 120
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 GTGTCCCTTCCTGATGTAATCCTTGTAAACTGTTTAGCCCGCATACCGAAATCGTACTAC 1599
Query 121 CCGAAACTCTCCTTAGTCTGCAAGAGCTTCTGCTCTCTCATCTTATCCATGGAACTTTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1600 CCGAAACTCTCCTTAGTCTGCAAGAGCTTCTGCTCTCTCATCTTATCCATGGAGCTCTAT 1659
Query 181 GTGGAGCGATTGTACCTTGGTACACATGAAGACGTCCTTCACGTCTGCTTACAGTTGCCC 240
|| ||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||
Sbjct 1660 GTAGAGCGATTGTACCTTCGAAGACATGAAGACGTCTTTCACGTCTGCTTACAGTTGCCC 1719
Query 241 GATCGTCGTCTTCCTTCATGGTTTAGTCTCTGGACTAAACCGGATCAAACCCTAACCAAC 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 GATCGTCGTCTTCCCTCATGGTTTAGTCTCTGGACTAAACCGGATCAAACCCTAACCAAT 1779
Query 301 GACATTGGGAAGAAGAAAAAGTCCACTAGAAATACTTTGTTGGTACCAATACCTTCTTCT 360
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1780 GACATCGGGAAGAAGAAAAAGTCTACTAGAAATACTTTGTTGGTACCAATACCTTCTTCT 1839
Query 361 TATTCTCCTCGTGTACCAATGTTCATCGGTGAGATTGGTTCAGAATTATACGCTATTAGC 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 TACTCTCCTCGTGTACCAATGTTCATCGGTGAGATTGGTTCAGAATTATACGCTATTAGC 1899
Query 421 AAACATAATACTCCATCCTCCGTCATGTGGGTTCGTGATAAGACTAGTATTTATGCCTGG 480
|||||||||| ||| ||||| ||||||||||||||| |||||| || || || ||||||
Sbjct 1900 AAACATAATAGTCCGTCCTCGGTCATGTGGGTTCGTAATAAGAGTACTAACTACGCCTGG 1959
Query 481 CGTAAAGCCCCTAGTATGACAGTAGCTCGTGCCAATGTTTTTGCTTATGTCATCAATGGG 540
|||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 1960 CGTAAAGCCCCTAGCATGACAGTAGCTCGAGCCAATGTTTTTGCTTGTGTAATCAATGGG 2019
Query 541 AAAATATACGTAATGGGAGGTTGTGCCGCAGATGAATCTAA-GTATTGGGCTGAGGTATT 599
|||||||||||||||||||||||||| ||||||||||| || | ||||||||||||| ||
Sbjct 2020 AAAATATACGTAATGGGAGGTTGTGCAGCAGATGAATC-AATGAATTGGGCTGAGGTTTT 2078
Query 600 CGACCCAAAGACTCAAACTTGGAAACCTTTAACTGACCCGGGGGCCGAGTTACGCGTATC 659
|||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||||
Sbjct 2079 CGACCCAAAGACTCAAACTTGGGAACCTTTACCTGACCCTGGGGATGAGTTACGCTTATC 2138
Query 660 TTCAATTATAGGTATGGCGGTGAGCGAAGGAAAGATTTATGTTAAGAACAGCTATGTGAA 719
|||| ||| | ||||| ||||| ||||||||||||||| |||||||| |||||| ||
Sbjct 2139 TTCATTTAAAACTATGGAGGTGATCGAAGGAAAGATTTACGTTAAGAAAAGCTATACGAT 2198
Query 720 GGACTACGTTTATGATCCGGAAGAAGATAAATGGGACGT-AGTTGCAAGCTCATTCATGA 778
|||||| |||||||||||||||||||||||||||||||| | | |||| |||||||||
Sbjct 2199 GGACTATGTTTATGATCCGGAAGAAGATAAATGGGACGTTA-TCACAAGAGCATTCATGA 2257
Query 779 TTGAGAGAAAGTGTGAGATAGAGAATGTATTGTACCGTTTTAGTAGACAAAGTTGTTCGT 838
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 2258 TTGAGAGAAAGTGTGAGATAGAGAATGTATTGTACCGTTGTCGTGGACAAAGTTGTTCGT 2317
Query 839 GGTATGACACAAAGCATAAAGAATGGAGAGATATCAAGGGTTTGGCTACATTGAATAGGC 898
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2318 GGTATGACACAAAGCAGAAAGAATGGAGAGATATCAAGGGTTTGGCTACATTGAATAGGT 2377
Query 899 GTCGTCGTTCT-AGTATTCTTGAAGTAGCGAAGTACGGTGACAAAGTCTTAATCTTGTGG 957
|||||||||| | | || |||||||||| || ||| |||||||| ||||||||||||||
Sbjct 2378 ATCGTCGTTCTTA-TGTTATTGAAGTAGCTAACTACTGTGACAAACTCTTAATCTTGTGG 2436
Query 958 GAAATCTTTGCGAAGCCTTTTTATCAAAACAAGAGTATTTGGTGTGCGGTGATTGCGCTT 1017
|||||||||||||||| | ||| ||||| |||||||||||| |||||| | |||
Sbjct 2437 GAAATCTTTGCGAAGC------A--AAA-CAAGAATATTTGGTGTGCCGTGATTTCACTT 2487
Query 1018 GAAAAG-CGTAAA-ATTGATGAAATTTGGGGAAAGGTTAAGTGGGCTAGTATTGTGCTTA 1075
||||| |||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2488 -AAAAGGCGTAAAGAT-GATGAAATTTGGGGAAAGGTTGAGTGGGCTAGTATTGTGCTTA 2545
Query 1076 CGGTTCCTAGATCATATGTTTTCTTGCGTTGTGAAGTGAAACCGGTTTGA 1125
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2546 CGGTTCCTAGTTCATATGTTTTCTTGCGTTGTGAAGTGAAACCGGTTTGA 2595
> Ahg942435 jgi|Araly1|942435|scaffold_602979.1
Length=1136
Score = 361 bits (195), Expect = 8e-99
Identities = 803/1087 (74%), Gaps = 79/1087 (7%)
Strand=Plus/Plus
Query 50 GTCCGTCGTTTTTGTCCCTTCCTGAAGAAATCCTTGTAAACTGTTTAGCCCGCATACCGA 109
|||| ||||||||||| |||||| | |||||| | ||||||||||||| |||||| |||
Sbjct 44 GTCCATCGTTTTTGTCACTTCCTCATGAAATCGTCCTAAACTGTTTAGCTCGCATATCGA 103
Query 110 AATCGTACTACCCGAAACTCTCCTTAGTCTGCAAGAGC--TTCTGCTCTCTCATCTTATC 167
||||||||| |||||||||||| |||||||||||| | ||| || ||||| || ||||
Sbjct 104 GATCGTACTATCCGAAACTCTCCCTAGTCTGCAAGA-CATTTC-GCACTCTCCTCATATC 161
Query 168 CATGGAACTTTA-CGTGGAGCGATTGTACCTTGGTACACATGAAGA-CGTCCTTCACGTC 225
| || | | | ||||| |||| || ||||| || || ||| | | | |||| |||
Sbjct 162 TAAAGAGC-TCACCGTGGCGCGAGTGCACCTTAAAACCCACGAA-ACCTTTTTTCATGTC 219
Query 226 TGCTTACAGTTGCCCGATCGTCGTCTTCCTTC-ATGGTTTAGTCTCTGGACT-AAACC-G 282
||||||||||| || ||| | | | |||||| || ||| | ||||||| | ||||| |
Sbjct 220 TGCTTACAGTTACCTGATAGACCTAATCCTTCAAT-GTTCACCCTCTGGA-TAAAACCTG 277
Query 283 GATCAAACCCTAACCAA-CGACATTGGGAAGAA-GAAAAAGTCCACTAGAAATACTTTGT 340
| ||||| | ||||||| | || ||| |||||| | | | ||| || || ||||| ||
Sbjct 278 G-TCAAATCTTAACCAACCAAC-TTGAGAAGAACG-AGAGGTCTACCGGAGATACTCGGT 334
Query 341 TGGTACCAATACCTTCTTCTTATTCTCCTCGTGTACCA----ATGTTCATCGGTGAGATT 396
|||||| |||||||||||| |||| | || |||||| ||| |||| | | ||
Sbjct 335 TGGTACAAATACCTTCTTCATATTATTCTAAAGTACCACCTTATG-TCATTACT--G-TT 390
Query 397 GGTTCAGAATTATACGCTA-TTAGCAAACAT--AAT-ACTCCATCCTCCGTCATGTGGGT 452
||||| |||| |||| | | ||| || | ||| | ||| |||||| ||||||||||
Sbjct 391 GGTTCCGAATCGTACG-GACTCAGC-CAC-TGCAATGA-TCCGTCCTCCATCATGTGGGT 446
Query 453 TCGTGATAAGACTAGTATTTATGCCTGGCGTAAAGCCCCTAGTATGACAGTAGCTCGTGC 512
|||| | ||| | | ||| || |||||||||||||| | ||||| |||||||| ||
Sbjct 447 TCGTAAGAAGGGGACT-TTT-TG-TTGGCGTAAAGCCCCAAACATGACTGTAGCTCGAGC 503
Query 513 CAATGTTTTTGCTTATGTCATCAATGGGAAAATATACGTAATGGGAGGTTG-TGCCGCAG 571
||| | |||| | ||| ||| |||||||||||| || ||||||||||| | || |
Sbjct 504 CAAAGCCCTTGCGTGCGTCCTCAGTGGGAAAATATATGTCATGGGAGGTTGCAG-GGCTG 562
Query 572 ATGAATCTAAGTATTGG-GCTGAGGTATTCGACCCAAAGACTCAAACTTGGAAACCTTTA 630
||||| | | ||||| | |||||| |||||| |||| ||||||||||| ||||||||
Sbjct 563 ATGAACCCGTGAATTGGTG-TGAGGTTTTCGACATAAAGTCTCAAACTTGGGAACCTTTA 621
Query 631 ACTGACCCGGGGGCCGAGTTACGCGTATCTTCAATTA-TAGGTATGGCGGTGAGCGAAGG 689
||||||| || | ||| | || | |||||||||| | | | | |||| | |||
Sbjct 622 CCTGACCCTGGCTCTGAGCTCCGTTTTTCTTCAATTAGAAAAT-TAGAGGTGTTCAAAGA 680
Query 690 AAAGATTTATGTTAAGAA-CAGCT-ATGTGAAGGACTAC-GTTTATGATCCGGAAGAAGA 746
|||| |||| ||| |||| || | | | ||| |||| | ||||||||||| ||||||
Sbjct 681 AAAGCTTTACGTT-AGAAGCA-ATGAGGAGAAAGACT-CTGTTTATGATCCAAAAGAAGG 737
Query 747 TAAATGGGACGTAGTT-G-CAAGCTCATTCATGATTGAGA-GAAAGTGTGAGATAGAGAA 803
||||| ||| || || | || | || |||| ||||| | | | | ||||||||
Sbjct 738 TAAATCGGATGT-TTTAGAAAAAC-CA--CATG--TGAGATG-TACAAT-A-ATAGAGAA 788
Query 804 TGTAT-TGTACCGTTTTAGTAGACAAAGTTGTTCGTGGTATGACACAAAGCATAAAGAAT 862
||| | |||| ||| || || ||| || || | ||||||||||||||| | |||||||
Sbjct 789 TGT-TGTGTATTGTTATAATAAACAGAGCTGCTGGTGGTATGACACAAATCGCAAAGAAT 847
Query 863 GGAGAGAT-ATCAAG-GGTTTGGCTACATTGAATAGGCGTCGTCGTTCTAGTATTCTTGA 920
| ||| | || || ||||| | || ||||| | || | ||| | | || ||||
Sbjct 848 GTAGA-CTGGTC-AGAGGTTTAGATATGTTGAACCTGAATCTTGGTTGTGGAATGATTGA 905
Query 921 AGTAGCGAAGTACGGTGACAAAGTCTTAATCTTGTGGGA-AATCTTTGCGAAGCCT--T- 976
| |||| || || ||||| ||| |||||||||| ||||| || |||| | | | |
Sbjct 906 AATAGCTAACTATGGTGAGAAACTCTTAATCTTATGGGACAA-GTTTGTTCATCGTGGTA 964
Query 977 TTTATCAAAAC-AAGAGTATTTGGTGTGCGGTGATTGCGCTTGAAAAGCGTAAAA-T--T 1032
|| |||| || |||| |||||||||||||||||||||||||||||| ||| | | |
Sbjct 965 CTTGTCAAGACAAAGA-TATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTGATGGTAGT 1023
Query 1033 GATGAAATTTGGGGAAAGGTTAAGTGGGCT-AGTATTGTGCTTACGGTTCCTAGATCATA 1091
|||||| |||||||||| || |||||||| | ||||||| | |||||| |||| |||||
Sbjct 1024 GATGAAGTTTGGGGAAACATTGAGTGGGCTGA-TATTGTGATGACGGTTTCTAGCTCATA 1082
Query 1092 TGTTTTC 1098
||||||
Sbjct 1083 CGTTTTC 1089
> Ahg327005 jgi|Araly1|327005|fgenesh1_pm.C_scaffold_6002225
Length=1077
Score = 111 bits (60), Expect = 9e-24
Identities = 151/192 (79%), Gaps = 17/192 (9%)
Strand=Plus/Plus
Query 917 TTGAAGTAGCGAAGTACGGTGACAAAGTCTTAATCTTGTGGGA-AATCTTTGCGAAGCCT 975
||||| |||| || || |||| ||| |||||||||| ||||| || ||| | ||
Sbjct 872 TTGAAATAGCTAACTATGGTGGTAAACTCTTAATCTTATGGGACAA-GATTG-G--TCC- 926
Query 976 TTTTATCAA-AACAAGAGTATTTGGTGTGCGGTGATTGCGCTTGA-AAAGCGT-A--AAA 1030
|| |||| || |||| |||||||||||| |||||||| |||| ||| ||| | |
Sbjct 927 --TTCTCAAGAAAAAGA-TATTTGGTGTGCCTTGATTGCGATTGAGAAA-CGTGATGGTA 982
Query 1031 TTGATGAAATTTGGGGAAAGGTTAAGTGGGCTAGTATTGTGCTTACGGTTCC-TAGATCA 1089
|||||||| |||||||||| || |||||||||||||||||||||||||||| | | |||
Sbjct 983 TTGATGAAGTTTGGGGAAAAATTGAGTGGGCTAGTATTGTGCTTACGGTTCCGT-GCTCA 1041
Query 1090 TATGTTTTCTTG 1101
|| |||||||||
Sbjct 1042 TACGTTTTCTTG 1053
> Ahg943935 jgi|Araly1|943935|scaffold_700164.1
Length=1232
Score = 82.4 bits (44), Expect = 7e-15
Identities = 95/118 (81%), Gaps = 10/118 (8%)
Strand=Plus/Plus
Query 985 AACAAGAGT-ATTTGGTGTGCGGTGATTGCGCTTGAAAAGCGTAA-AATTGATGAAATTT 1042
||||||| | |||||||||||||||||||||||||||| || || ||| | || ||||
Sbjct 1068 AACAAGA-TGATTTGGTGTGCGGTGATTGCGCTTGAAAGGCACAACAATCAA-GAGATTT 1125
Query 1043 GGGGAAAGGTTAAGTGGGCTAGTAT--TGTGCTTACGGTTCCTA-GA-TCATATGTTT 1096
|||| |||||| ||||| || | || ||||||||| || |||| || | ||| ||||
Sbjct 1126 GGGGGAAGGTTGAGTGG-CTTG-ATGCTGTGCTTACTGTCCCTAAGACTTATAAGTTT 1181
> Ahg944135 jgi|Araly1|944135|scaffold_700364.1
Length=1670
Score = 65.8 bits (35), Expect = 7e-10
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 586 TGGGCTGAGGTATTCGACCCAAAGACTCAAACTTGGAAACCTTT 629
||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 595 TGGGCAGAGGTATTCGACCCAAAGACTCAAACTTGGGAATCTTT 638
> Ahg931168 jgi|Araly1|931168|scaffold_303625.1
Length=225
Score = 63.9 bits (34), Expect = 3e-09
Identities = 57/68 (84%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 994 ATTTGGTGTGCGGTGATTGCGCTTGAAA-AGCGTAAAATTGATGAAATTTGGGGAAAGGT 1052
|||||||||||||||||||||||||||| | | | | ||| || |||||||||||| |
Sbjct 70 ATTTGGTGTGCGGTGATTGCGCTTGAAAGA-CACAGTAGTGAAGAGATTTGGGGAAAGAT 128
Query 1053 TAAGTGGG 1060
| ||||||
Sbjct 129 TGAGTGGG 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5