BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39760.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943974 jgi|Araly1|943974|scaffold_700203.1 1544 0.0
> Ahg943974 jgi|Araly1|943974|scaffold_700203.1
Length=1152
Score = 1544 bits (836), Expect = 0.0
Identities = 1020/1110 (92%), Gaps = 7/1110 (1%)
Strand=Plus/Plus
Query 1 ATGATCTCCCAAGAAGAAGTACCGCAGAGTACAAACCATTCTCTGTCATTTTCATCACTA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 26 ATGATCTCCCAAGAAGAAGTACCCCAGAGTACAAACCATTCTCTGTCATTTTCATCACTA 85
Query 61 CCCCACGAAATCGTTGTGAGTTGCTTAGCCCGCGTCTCGGGATCGTACTACCCGAAACTC 120
|| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 86 CCGCACGAAATCGCTGTGAGTTGCTTAGCCCGCGTATCGGGATCGTACTACCCGAAACTT 145
Query 121 TGCCTCGTCTCCAAGCAATTCCGCTCAATCATCTTATCAAATGAAATCTACAAGGCTAGA 180
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 146 TGCCTTGTCTCCAAGCAATTCCGCTCAATCATCTTATCAAATGAACTCTACAAGGCTAGA 205
Query 181 TCCCACCTTGGAACCAAAGAAAACCGCCTCTTCGTTTGGCTAAAGTTGCCCACTCGTTCT 240
| || ||||||||||||||||||||||||| ||| |||||||| ||||| |||||| |
Sbjct 206 ACTCAACTTGGAACCAAAGAAAACCGCCTCTACGTATGGCTAAAATTGCCTACTCGTAGT 265
Query 241 TATCCTTCTTGGTTCGCCCTTTGGATAAAGCCTAATGAAACCCTGACCAACGATGGCCCG 300
||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 266 TATCCTTCTTGGTTCACCCTTTGGATAAGGCCTAAACAAACCCTAACCAACGATGGCCCG 325
Query 301 ATCAAGAAGCAGTCTACTGGAAATCTACTGGTGCCGTTGCCTTGTTCGTATAATTATCAA 360
|||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 326 ATCAAGAAAAAGTCTACTGGAAATTTACTGGTGTCGTTGCCTTCTTCGTATAATTATCAA 385
Query 361 GTACTAGTACCCTCAGTGATAGTTGGTTCAGAAACATACATAGTCGGTGGATACGATGAT 420
||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||
Sbjct 386 GTAGTAGTACCCTCAGTGATAGTTGGTTCAGAAACCTACATAATCGGTGGATAC-A--AT 442
Query 421 GCTCTTTCTTCATCCGTGTGGTTCTATAAAAATGGGAAGATCCACACCTTAAGTAAATCC 480
| || |||||| ||||||||| ||||||| ||||| ||||| ||||||||| ||||| |
Sbjct 443 GTTCCTTCTTCCTCCGTGTGGGTCTATAAGAATGGCAAGATTCACACCTTATGTAAAGCT 502
Query 481 CCTAGTATGTCGGTGGCTCGGATTGACGCAGTAGTTGTTGGACAGTATCCTAACATATAT 540
||||| ||||| ||||| |||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 503 CCTAGAATGTCCGTGGCACGGATTAACGCAGTAATTGTTGGACAGTATCCTAAAATATAT 562
Query 541 GTAATGGGAGGGTGTGATTCAGATGAATCCATGAATTGGGGTGAGGTTTTCAACATAAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GTAATGGGAGGGTGTGATTCAGATGAATCCATGAATTGGGGTGAGGTTTTCAACATAAAG 622
Query 601 ACTCAAACGTGGGAACCTTTGCCAGACCCTGGTCCAGAGGTTCGTGGCCAGTTGGTTAGG 660
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 623 ACTCAAACGTGGGAACCTTTGCCAGACCCTGGTCCAGATGTCCGTGGCCATTTGGTTAGG 682
Query 661 AAAATGAAAATGCAGAAGAAAAACGTCTACGTTAGTAGTGAAAAGAAGGATTATATTTAT 720
|||||||||||| | |||||||| | ||||||||||| || |||||||||||||| |||
Sbjct 683 AAAATGAAAATGTATCAGAAAAACCTTTACGTTAGTAGCGAGAAGAAGGATTATATATAT 742
Query 721 GATACTGAAGAACGTACATGGAAAGTTACAGAGGCAGTCTTTAATTTCAGTTGGTGTGTG 780
|||||| ||||||||| |||| | |||||||||| | |||| |||| |||||||||||||
Sbjct 743 GATACTCAAGAACGTAGATGGGATGTTACAGAGGTACTCTTAAATTGCAGTTGGTGTGTG 802
Query 781 ATAGAGAAAGTACGCTACATATATTATAACAAGAATTGTTGGTGGCTTGACACAAAGTCT 840
|||||||||||||||||||| ||||| ||||| || || |||||||||||||||||||||
Sbjct 803 ATAGAGAAAGTACGCTACATTTATTACAACAAAAACTGCTGGTGGCTTGACACAAAGTCT 862
Query 841 AAAGACTGGAGAAAGATCAAAGGTTTGGATTTTCTAAATAAGTTTCGTGAAACAGATAGG 900
||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 863 AAAGAGTGGAGAACGATCAAAGGTTTGGATTTTCTAAATAAATTCCGTGAAACAGATAGG 922
Query 901 ATTGAAATAGTTAACTT-GGATGGCAAACTCGTAATGATATGGGACAGATTTACGCTATC 959
|||||||||||||||| || ||| |||||||||||| ||||||||||||||||||||||
Sbjct 923 GTTGAAATAGTTAACTTTGG-TGGGAAACTCGTAATGGTATGGGACAGATTTACGCTATC 981
Query 960 TAAACGAAACAAGAAGATTTGGTGTGCGATGATTGCGCTTGAAAAGTGTCAAGGATGTGA 1019
||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 982 TAAACGAAACAAGAAAATTTGGTGTGCGATGATTGCGCTTGAAAAGTCTCATGGAGGTGA 1041
Query 1020 AGGAATTTGGGGCAAGATTGAATGGATTGGTGATGTGCTTATGGTCCCTTTATCATATAG 1079
|| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1042 AGAAATTTGGGGAAAGATTGAATGGATTGATGATGTGCTTATGGTCCCTTTATCATATA- 1100
Query 1080 CTT-CTTGGATTGTATGGTCATATCCATAT 1108
||| ||||||||||||||||||||||||||
Sbjct 1101 CTTTCTTGGATTGTATGGTCATATCCATAT 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5