BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39770.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888198 jgi|Araly1|888198|Al_scaffold_0007_184 1687 0.0
> Ahg888198 jgi|Araly1|888198|Al_scaffold_0007_184
Length=1050
Score = 1687 bits (913), Expect = 0.0
Identities = 1004/1049 (96%), Gaps = 2/1049 (0%)
Strand=Plus/Plus
Query 76 ATGGTTAGATTCATAGAAgaaaacacaaaacttgtagaaaaagaaaccgggaacaaatca 135
||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1 ATGGTAAGATTCATAGAAGAAAACACAAAACTTGTGGAAAAAGAAACAGGAAACAAATCA 60
Query 136 aacaacgatgtaacaacaacGAAGAAGAAAGCTCTTCAAGATATCATTATCAACAATGGA 195
||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct 61 AACAACGATGTAACAACAACGAAGAAGAAAGTTCTTCAAGATCTTAGTATCAACAATGGA 120
Query 196 GTAGGATTGATCAATTCATGGGTTGATTCAATGAGAGCTTGTTCCCCTACTCATCTTAAA 255
| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 121 GGAGGATTAATCAATTCATGGGTTGATTCAATGAGAGCTTGTTCTCCTACTCACCTTAAA 180
Query 256 TCTTTGTTGAAACAAAGCTCTTGGCTCACGGAACATCCATCAGCTTTGGATATGTTTGAA 315
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCTTTGTTGAAACAAAGCTCTTGGCTCACAGAACATCCATCAGCTTTGGATATGTTTGAA 240
Query 316 GAGATTCTTCACCTTTCTGAAGGAAAACAAATCGTTATGTTCTTGGATTATGATGGCACT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGATTCTTCACCTTTCTGAAGGAAAACAAATCGTTATGTTCTTGGATTATGATGGCACT 300
Query 376 TTATCTCCCATTGTTGATGATCCAGATCGAGCTTTCATGTCT-AGAAAGATGAGAAGAAC 434
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 301 TTATCTCCCATTGTTGATGATCCAGATCGAGCTTTCATGTCTAAG-AAGATGAGAAGAAC 359
Query 435 TGTGAGGAAACTAGCAAACTGTTTCCCGACGGCCATAGTTAGTGGGAGATGCATAGAAAA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 TGTGAGGAAACTAGCAAACTGTTTCCCGACGGCCATAGTTAGTGGGAGATGCAGAGAAAA 419
Query 495 GGTTTATAACTTTGTAAAACTAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACAT 554
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTTTATAATTTTGTGAAACTAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACAT 479
Query 555 CAAAGGACCAGAGCAAGGGTCCAAATATGAGCAAATTTTACAGGATAGTAAATCTCTTCT 614
|||||||||||||||||||||||||| |||| || | | |||||||||||||||||
Sbjct 480 CAAAGGACCAGAGCAAGGGTCCAAATTTGAGGAAGTAAGATTTGATAGTAAATCTCTTCT 539
Query 615 TTGCCAACCAGCTACAGAGTTCCTCCCCATGATCGACGAGGTTTATCATAAATTAGTGGA 674
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 540 TTGCCAACCAGCTACAGAGTTCCTCCCCATGATCGACGAGGTTTATAAAAAATTAGTGGA 599
Query 675 GAAAACAAAATCTACTCCCGGAGCCCAAGTAGAGAACAACAAATTTTGTGTCTCTGTTCA 734
|| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 600 GACAACAAAATTTACTCCCGGAGCCCAAGTAGAGAACAATAAATTTTGTGTCTCGGTTCA 659
Query 735 CTTCCGACGCGTAGATGAAAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAAT 794
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTTCCGACGTGTCGATGAAAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAAT 719
Query 795 GAAAGACTACCCTAAGCTCCGTCTTACTCAAGGAAGAAAAGTTTTGGAGGTTCGTCCGAT 854
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 720 GAAGGACTACCCTAAGCTCCGTCTTACTCAAGGAAGAAAAGTTTTAGAAGTTCGTCCTAT 779
Query 855 TATTAAATGGGACAAAGGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAA 914
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TATTAAATGGGATAAAGGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAA 839
Query 915 TTGTACCGACGTTTTCCCTCTTTATATCGGAGATGATCGCACCGACGAAGATGCATTCAA 974
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 840 TTGTACCGACGTGTTCCCTCTTTATATCGGAGATGATCGCACAGACGAAGATGCATTTAA 899
Query 975 GGTATTGAGAGAACGAAGACAAGGTCTTGGCATTCTTGTATCTAAATTTCCAAAGGAGAC 1034
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GATATTGAGAGAAAGAAGACAAGGTCTTGGCATTCTTGTATCTAAATTTCCAAAGGAGAC 959
Query 1035 TAGCGCGTCTTATTCACTGCAAGAACCCGATGAGGTTATGGAGTTCTTGCAACGTTTAGT 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TAGCGCGTCTTATTCACTGCAAGAACCCGATGAGGTTATGGAGTTCTTGCAACGTTTAGT 1019
Query 1095 GGAATGGAAACAATTGAGATCTGGAGCAT 1123
|||||||||||||||||||||||||||||
Sbjct 1020 GGAATGGAAACAATTGAGATCTGGAGCAT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5