BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39780.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490762 jgi|Araly1|490762|fgenesh2_kg.7__195__AT4G39780.1 1550 0.0
Ahg486209 jgi|Araly1|486209|fgenesh2_kg.5__2201__AT3G57600.1 110 3e-23
> Ahg490762 jgi|Araly1|490762|fgenesh2_kg.7__195__AT4G39780.1
Length=1109
Score = 1550 bits (839), Expect = 0.0
Identities = 1029/1114 (92%), Gaps = 40/1114 (4%)
Strand=Plus/Plus
Query 140 AAGATCCATGGCAGCCATAGATATGTTCAATAGC-A-AC--A-----CAGATCCTTTTCA 190
||||||||||||| |||||||||||||||||||| | || | |||||||||||||
Sbjct 7 AAGATCCATGGCAACCATAGATATGTTCAATAGCAACACAGATTTCTCAGATCCTTTTCA 66
Query 191 AGAAGAGCTCATGAAAGCACTTCAACCTTATACCACCAACACTGATTCTTCTTC-TC--C 247
||||||||||||||||||||||||||||||| ||||||||| ||||||||| || |
Sbjct 67 AGAAGAGCTCATGAAAGCACTTCAACCTTAT---TCCAACACTGGTTCTTCTTCTTCTTC 123
Query 248 T--A----CGTATTCAAACACAGTCTTCGGTTTCAATCAAACCACATCTCTCGGTCTAAA 301
| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 124 TCCATCTCCGTATTCAAACACAGTCTTCGGTTTCAATCAAACCACACCTCTTGGTCTAAA 183
Query 302 CCAGCTCACACCTTACCAAATCCACCAAATCCAAAACCAGCTTAACCAGAGACGTAACAT 361
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 184 CCAACTCACACCTTACCAAATCCACCAAATCCAAAACCAGATCAACCAGAGACGTAACAT 243
Query 362 AATCTCTCCAAATCTAGCCCCAAAGCCTGTCCCAATGAAGAACATGACCGCTCAGAAACT 421
||||||||||||||| ||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 244 AATCTCTCCAAATCTTGCCCCAAAGCCAGTCCCAATGAAGAACATGGCCACTCAGAAACT 303
Query 422 CTATAGAGGAGTTAGACAAAGGCACTGGGGAAAATGGGTAGCTGAGATCCGTTTACCCAA 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TTATAGAGGAGTTAGACAAAGGCACTGGGGAAAATGGGTAGCTGAGATCCGTTTACCCAA 363
Query 482 GAACCGGACCCGACTCTGGCTTGGAACTTTCGACACAGCTGAAGAAGCAGCCATGGCTTA 541
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GAACAGGACCCGACTCTGGCTTGGAACTTTCGACACAGCTGAAGAAGCAGCCATGGCTTA 423
Query 542 TGACCTAGCTGCTTACAAGCTAAGAGGCGAGTTCGCGAGACTTAATTTCCCACAGTTCAG 601
|| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 424 CGATCTTGCTGCTTACAAGCTAAGAGGCGAGTTCGCGAGGCTTAATTTCCCACAATTCAG 483
Query 602 ACACGAGGATGGATACTACGGAGGAGGTAGCTGTTTCAATCCTCTTCATTCCTCTGTCGA 661
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 484 ACACGAGGATGGATACTACGGAGGAGGTAGCTGCTTCAATCCTCTTCATTCCTCTGTTGA 543
Query 662 CGCAAAGCTCCAAGAGATTTGTCAGAGCTTGAGAAAAACAGAGGATATTGACCTCCCCTG 721
|||||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 544 CGCAAAGCTCCAAGCGATTTGTCAGAGCTTGAGGAAAACAGAGGATGTTGATCTCCCCTG 603
Query 722 TTCTGAAACAGAGCTTTTCCCGCCAAAAACAGAGTATCAAGAAAGTGAATATGGGTTCTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTCTGAAACAGAGCTTTTCCCGCCAAAAACAGAGTATCAAGAAAGTGAATATGGGTTCTT 663
Query 782 GAGATCTGATGAGAATTCGTTTTCAGATGAGTCTCATGTGGAATCTTCTTCGCCGGAATC 841
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 664 GAGATCTGATGAGAATTCGTTTTCAGATGAGTCTCAGGTTGAATCTTCTTCGCCGGAATC 723
Query 842 TGGTATTACTACGTTCTTGGACTTT-TCGGATTCTGGATTTGATGAGATTGGGAGTTTCG 900
|||| |||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||
Sbjct 724 TGGTCTTACTACGCTCTTGGA-TTTCTCGGATTCGGGGTTTGATGAGATTGGGAGTTTCG 782
Query 901 GGCTGGAGAAGTTTCCTTCTGTGGAGATTGATTGGGATGCGATTAGCAAATTGTCCGAAT 960
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 783 GTTTGGAGAAGTTTCCTTCTGTGGAGATTGATTGGGATGCGATTAGCAAATTGTCTGAAT 842
Query 961 CTTAAAC-AAAGCAAAGAGAAGACTTTTTCTTTTAGGAGTTTGTCTTTCAATTTCAGTGT 1019
||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CTTAAACCAAA-CAAAGACAAGACTTTTTCTTTTAGGAGTTTGTCTTTCAATTTCAGTGT 901
Query 1020 CTTATATTAATC-TCTCTGCAACTGAAATTTTTAACAGTTGCGGAGAGAATCGTCTCTAG 1078
|||||| || | |||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 902 CTTATAGTATTAATCTCTGCAACTGAAATTTTTAACAGTTGAGGAGAGGATCGTCTCTAG 961
Query 1079 GGTTTGTTTCT--------CTTCCTCCATGTTTTGGTCTGACTGGTTTATGTCttttttt 1130
||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 962 GGTTTGTTTCTGTTGAAATCTTCCTCCATGTTTTGGTCTGACTGGTTTATGTCTTCTTTT 1021
Query 1131 tttttttGAACTTTCAAAAACCTTTGTCATTGACCAATCGGAGAAGTTTCCATGTATTCT 1190
||| | | |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1022 TTT-----A-CGTTCAAAAACCTTTGTCATTGACCAATCGGAGAAGATTCCATGTATTAT 1075
Query 1191 CTCATCTTTAAATTTCTAATGAAGAATGTAAATT 1224
|| |||||||||||||||||||||||||||||||
Sbjct 1076 CTTATCTTTAAATTTCTAATGAAGAATGTAAATT 1109
> Ahg486209 jgi|Araly1|486209|fgenesh2_kg.5__2201__AT3G57600.1
Length=1026
Score = 110 bits (59), Expect = 3e-23
Identities = 100/119 (84%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 429 GGAGTTAGACAAAGGCAC-TGGGGAAAATGGGTAGCTGAGATCCGTTTA-CCCAAGAACC 486
||||| || |||||| || ||||| |||||||||||||||||| | | ||||||||
Sbjct 139 GGAGTCAGGCAAAGG-ACGTGGGGCAAATGGGTAGCTGAGATCAG-GGAGCCCAAGAAGA 196
Query 487 GGACCCGACTCTGGCTTGGAACTTTCGAC-ACAGCTGAAGAAGCAGCCATGGCTTATGA 544
|| | |||| ||||||||| |||||| | |||||||||||||||||||||||||||||
Sbjct 197 GGGCAAGACTTTGGCTTGGATCTTTCG-CTACAGCTGAAGAAGCAGCCATGGCTTATGA 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5