BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39790.1
Length=2340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888200 jgi|Araly1|888200|Al_scaffold_0007_186 2998 0.0
Ahg888382 jgi|Araly1|888382|Al_scaffold_0007_368 185 1e-45
> Ahg888200 jgi|Araly1|888200|Al_scaffold_0007_186
Length=1986
Score = 2998 bits (1623), Expect = 0.0
Identities = 1881/2001 (94%), Gaps = 36/2001 (2%)
Strand=Plus/Plus
Query 241 ATGGGTCATTCGATATTGGAGAAAATGGGATGTTCAAACTCGAAAGCATCGATGAATAAG 300
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1 ATGGGTCATTCGATATTGGAGAAAATGGGATGTTCAAACTCGAAAACATCGATGAAGAAG 60
Query 301 AAGAACGAGCCGCTTCATCTATGCAAAGAAAGGAAGAGATTTGTCAAACAAGCTATGGAT 360
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAACGAGCCACTTCATCTATGTAAAGAAAGGAAGAGATTTGTCAAACAAGCTATGGAT 120
Query 361 TCCAGATGTGCTTTAGCCGCTGCACACGTGTCTTACATCCGTTCACTCCGTAACATCGGA 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCCAGATGTGCTTTAGCCGCTGCACACGTGTCATACATCCGTTCACTCCGTAACATCGGA 180
Query 421 GCTTGTCTTCGTCAATACGCGGAGGCGGAGACTGCTCATGAATCATCTCCGTCGTTAACC 480
|||||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 181 GCTTGTCTCCGTCAATACGCGGAGGCGGAGACGGCTGATGAATTATCTCCGTCGTTAACC 240
Query 481 GCCACTGAGCCTGAGAAATCTCCTTCTCATAACTCCTCTTACCCTGACGATTCGGTTGAC 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GCCACTGAGCCTGAGAAATCTCCTTCTCATAACTCCTCTTACCGTGACGATTCGGTTGAC 300
Query 541 TCGCCACTGAGTCATAACTCGAATCCAAACCCTAACCCTAAACCCCTTTTCAATCTAAGT 600
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGCCACTGAGTCATTACTCGAATCCAAACCCTAACCCTAAACCCCTTTTCAATCTAAGC 360
Query 601 TACATGAAGACGGAGACGGCTAGTTCTACTGTGACTTTCACTATTAACCCTCTGAGCGAC 660
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 361 TACATGAAGACGGAGACAGCTAATTCTACTGTGACTTTCACGATTAACCCTCTGAGCGAC 420
Query 661 GGTGATGACGATCTGGAAGTGACAATGCCGGCGTTTTCTCCTCCTCCTCCGCCGCGTCCT 720
||||| ||||||||||| | ||||||||||||| ||| | ||||||||||||||||||||
Sbjct 421 GGTGAAGACGATCTGGAGGAGACAATGCCGGCG-TTT-T-CTCCTCCTCCGCCGCGTCCT 477
Query 721 CGCCGGCCAGAGACGTCTTCTTGGGACTATTTCGACACTTGTGACGATTTTGATAGCTTT 780
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 478 CGCCGGCCAGAGACGTCTTCTTGGGACTATTTCGACACAAGTGACGATTTTGATAGCTTT 537
Query 781 AGATTTGTAGGGCTAAGTGAACAAACCGAGATTGATAGTGAATGTGATGCAGCAGTTATA 840
||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 538 AGATTTGTAGGGCTAAGTGAACAAA-CG-GA--GATA--GATTGTGATGCAGCAGTTATA 591
Query 841 GGATTAGAGAAGATTACTAGTCAAGGGAATGTAGCAAAATCTGGTTCAGAGACATTGCAA 900
||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 592 GGATTAGAGAAGA-T--TAGTCAAGGGAATGTAGCAAAATCTGGTTCAGTGTCATTGCAA 648
Query 901 GACTCGAGTTTTAAAACAAAGCAGAGGAAACAGAGT--T---G-TGA--A-G-A--T--- 945
|||||||||||||||||||||||||||||||||||| | | ||| | | | |
Sbjct 649 GACTCGAGTTTTAAAACAAAGCAGAGGAAACAGAGTAGTGAAGATGATGATGAAGCTGGA 708
Query 946 AATGATGAAAGAGAAGATCCATCGGAGTTTATCACACATAGAGCCAAAGACTTTGTGTCG 1005
|||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 709 AATGGTGAAAGAGAAGATCCATCAGAGTTTATCACACATAGAGCTAAAGACTTTGTGTCA 768
Query 1006 AGTATGAAAGATATAGAACATAAGTTCTTTAGAGCTTCTGAATCTGGAAGAGAAGTTTCA 1065
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGTATGAAAGATATAGAGCATAAGTTCTTTAGAGCTTCTGAATCTGGAAGAGAAGTTTCA 828
Query 1066 AGAATGCTTGAAGTTAACAAAATCAGAGTCGGATTCGCCGATATGACAGGAAAGGGAAAT 1125
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 829 AGAATGCTTGAAGCTAACAAAATCAGAGTCGGATTCGCGGATATGACAGGAAAGGGAAGT 888
Query 1126 TCAATAGCGTTTCTTGCAGCTTTGAAGCGAGCTTGTTGTAGAGGGAAAAGTTATTCACCA 1185
|||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 889 TCAATAGCGTGTCTTGCAGCTTTGAAGCAAGCTTGTTGTAGAGGGAAGAGTTATTCACCA 948
Query 1186 GTTTCTCAAGAGCCATTGAGTCATCAAGTTACTAAAGTCATTGTGTGGAAGAGAACATCG 1245
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GTTTCTCAAGAGCCTTTGAGTCATCAAGTTACTAAAGTCATTGTGTGGAAGAGAACATCG 1008
Query 1246 TCGTCAAGATCCTCCACTTCTAGAAATCCGTTGATCCAGACATCAAAAGAAGATCACGAT 1305
|| ||||||||||| || ||||||||||||||||| |||||| | ||||||||||| |||
Sbjct 1009 TCTTCAAGATCCTCGACATCTAGAAATCCGTTGATTCAGACAACTAAAGAAGATCATGAT 1068
Query 1306 GATGAAAGTGGAAGTGATTTCATCGAAGAGTTTTGTATGATCTCAGGAAGTCACTCTTCT 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GATGAAAGTGGAAGTGATTTCATCGAAGAGTTTTGTATGATCTCAGGAAGTCACTCTTCT 1128
Query 1366 TCGCTTGATCGGTTATACGCTTGGGAGAGAAAACTCTATGATGAAGTCAAGGCGAGTGAG 1425
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCGCTTGATCGATTATACGCTTGGGAGAGAAAACTCTATGATGAAGTCAAGGCGAGTGAG 1188
Query 1426 ATGATTAGGAAAGAGTATGATCGAAAATGCGAGCAGCTAAGGAACCAATTCGCAAAGGAT 1485
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1189 ATGATTAGGAAAGAGTATGATCGAAAATGCGAGCAGCTAAGGAACCAATTTGCAAAGGAT 1248
Query 1486 CACAGTGCTAAATCGATGGATAAAACAAGAGCAGCTGCTAAAGATCTTCATTCAAGAATC 1545
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CACAGCGCTAAATCGATGGATAAAACAAGAGCAGCTGCTAAAGATCTTCATTCAAGAATC 1308
Query 1546 AGAGTCGCGATTCAATCTGTTGAATCGATTTCAAAGCGGATTGAGAGAATCAGAGACGAT 1605
||||||||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 1309 AGAGTCGCGATTCAATCTGTTGATTCAATATCTAAGCGGATTGAGAGAATCAGAGACGAT 1368
Query 1606 GAGCTCCACCCACAGCTCTTAGAGTTTCTTCAAGGGTTGATAAGAATGTGGAAAGCGATG 1665
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1369 GAGCTCCAGCCACAGCTCTTAGAATTTCTTCAAGGGTTGATAAGAATGTGGAAAGCAATG 1428
Query 1666 CTTGAATGTCATCATACACAGTACATTACCATTTCATTGGCTTACCATTGTCGACATTCC 1725
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1429 CTTGAATGTCATCATTCACAGTACATCACCATTTCATTGGCTTACCATTGTCGAAATTCC 1488
Query 1726 TCCAAAACAGCACACGAAAGT-GTC-CTTAAGAGGCGGATTTTGGCGGAGCTTCTAGAAG 1783
||||||||||||| ||| | | | | || ||||| ||||||||| | || ||||||||||
Sbjct 1489 TCCAAAACAGCACCCGAGA-TCG-CGCTCAAGAGACGGATTTTGTCAGAACTTCTAGAAG 1546
Query 1784 AAACAGAGTGTTTTGGTCTAAGCTTTGTAGATTTGGTTCACAGTATGGCTTCTTATGTGG 1843
|||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||
Sbjct 1547 AAACAGAGTGTTTTGGTCTAAGCTTTGTAGATTTGGTTAACAGTATGACTTGTTACGTGG 1606
Query 1844 AAGCTCTGAATGGTTGGCTTCACAACTGTGTCTTGCTCCCTCAAGAACG-T--TCTACAA 1900
||||| | ||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1607 AAGCTGTCAATGGTTGGCTTCACAACTGTGTCTTGCTCCCTCAAGAACGTTCCTCTTTAA 1666
Query 1901 GAAACCGAAGACCATGGTCCCCACGTCGTGTCCTGGCTCCACCGATATTCGTGCTGTGTC 1960
||||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1667 GAAACCGTAGACCGTGGTCCCCTCGACGTGTCCTGGCTCCACCGATATTCGTTCTGTGTA 1726
Query 1961 GGGACTGGTCTGCAGGGATCAAAACACTGCCGTCTGATGAACTTAGCGGGTCAATCAAGG 2020
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 GGGACTGGTCTGCTGGGATGAAAACACTGCCGTCTGATGAACTTAGCGGGTCAATCAAGG 1786
Query 2021 GGTTTTCCTTGGATATGGAGATGTTGGGGGAAGAAAAAGGCGGTTCACTGTTGGTTTCGG 2080
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1787 GGTTTTCCTTGGATATGGAGATGTTGGGGGAAGAAAAAAGCGGTTCGGTGTTGGTTTCGG 1846
Query 2081 ATTTGTCGAGTGTGCATTCGAGTTTGGCGAAGCTTCTAGAGAGATTAAAAAAGTTTTCGG 2140
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1847 ATTTGTCGACTGTGCATTCGAGTTTGGCGAAGCTTCTAGAGAGATTGAAAAAGTTTTCGG 1906
Query 2141 AAGCTTCTTTAAAAATGTATGAAGATGTAAAGGTGAAAAGTGAAGCAGCTAGAGTTGCTT 2200
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 AAGCTTCTTTGAAAATGTATGAAGATGTAAAGGTGAAAAGTGAAGCAGCTAGAGTTGCTT 1966
Query 2201 ACACTAATAAATAATT-CTAA 2220
|||||||||| ||||| ||||
Sbjct 1967 ACACTAATAA-TAATTTCTAA 1986
> Ahg888382 jgi|Araly1|888382|Al_scaffold_0007_368
Length=396
Score = 185 bits (100), Expect = 1e-45
Identities = 121/131 (92%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 1506 TAAAACAAGAGCAGCTGCTAAAGATCTTCATTCAAGAATCAGAGTCGCGATTCAATCTGT 1565
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TAAAACAAGATCAGCTTCTAAAGATCTTCATTCAAGAATCAGAGTCGCGATTCAATCTGT 302
Query 1566 TGAATCGATTTCAAAGC-GGATTGAGAGAATCAGAGACGATGAGCTCCACCCACAGCTCT 1624
||| ||||||||||||| || |||||||| ||||||| ||||||||| | |||||||| |
Sbjct 303 TGATTCGATTTCAAAGCTGG-TTGAGAGATTCAGAGATGATGAGCTCGAGCCACAGCTAT 361
Query 1625 TAGAGTTTCTT 1635
|||||||||||
Sbjct 362 TAGAGTTTCTT 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88140826930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5