BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39795.1

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888201 jgi|Araly1|888201|Al_scaffold_0007_187                     472    2e-132


> Ahg888201 jgi|Araly1|888201|Al_scaffold_0007_187
Length=399

 Score =  472 bits (255),  Expect = 2e-132
 Identities = 356/401 (89%), Gaps = 22/401 (5%)
 Strand=Plus/Plus

Query  57   ATGTTGTTAGGGAATCGACCACGGCCTCAAATGCAGAGAACAGCAAGCATAACGAGGATC  116
            |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTGATAGGGAGTCGACCACGGCCTCAAATGCAGAGAACAGCAAGCATAACGAGGATC  60

Query  117  ACTATCGAAGTTGATGGTGATCAGACCGCCGGCCAAGACTCTGACG-TGTCTATGACGGT  175
            || ||||| ||||||| |||||| ||||||||||||||| |||||| || ||||||||||
Sbjct  61   ACCATCGAGGTTGATGATGATCAAACCGCCGGCCAAGACACTGACGTTG-CTATGACGGT  119

Query  176  GGTTGACGGCGGAGAAAATTACGCCCAGCGGTTC---------TTGTCGCCGGTAAATCA  226
            ||||||||||||||| ||||||| |||||| |||         |||||||||||||||||
Sbjct  120  GGTTGACGGCGGAGATAATTACGACCAGCGATTCTTGGGGATGTTGTCGCCGGTAAATCA  179

Query  227  CCAGAGGAACGAGAGAAAATACGGTGGGAGATCCTCA-C--CGTC---G---TCTTTTCT  277
            || |||||||||||||||| |||||||| |||| ||| |  ||||   |   ||||||||
Sbjct  180  CCGGAGGAACGAGAGAAAAGACGGTGGGCGATCATCACCGTCGTCGTTGTCCTCTTTTCT  239

Query  278  TGTAAACTGTGGCTTTTGCAAACGCGGTCTT-GCTCCGGGTCGTGATATTTACATGTACA  336
            || ||||||||| |||||||||||| || || ||||||||||||||||||||||||||||
Sbjct  240  TGGAAACTGTGGATTTTGCAAACGCCGT-TTAGCTCCGGGTCGTGATATTTACATGTACA  298

Query  337  AAGGGGACGCAGCGTTTTGTAGCATAGAATGCAGAGAACAGCAAATGGAGCACGACGAGG  396
            |||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct  299  AAGGGGACGCAGCGTTTTGTAGCATAGAATGCAGAGAACAGCAAATGGAGCAAGAGGAAG  358

Query  397  GGAAAACAAGAAACCGCGTCGTACTATCACCTTCAAAATAA  437
            | ||||||||||||||||||||||||||||| ||||| |||
Sbjct  359  GCAAAACAAGAAACCGCGTCGTACTATCACCATCAAATTAA  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20489551293


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5