BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39800.1
Length=1921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943979 jgi|Araly1|943979|scaffold_700208.1 2634 0.0
Ahg932186 jgi|Araly1|932186|scaffold_400174.1 1687 0.0
Ahg487844 jgi|Araly1|487844|fgenesh2_kg.6__978__AT5G10170.1 1184 0.0
> Ahg943979 jgi|Araly1|943979|scaffold_700208.1
Length=1576
Score = 2634 bits (1426), Expect = 0.0
Identities = 1519/1565 (97%), Gaps = 1/1565 (0%)
Strand=Plus/Plus
Query 60 TTTTCCTCTGCAAAAATGTTTATTGAGAGCTTCAAAGTTGAGAGCCCGAACGTGAAGTAC 119
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TTTT-CTCGGGAAAAATGTTTATTGAGAGCTTCAAAGTTGAGAGCCCGAACGTGAAGTAC 65
Query 120 ACAGAGAATGAGATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGAAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 ACAGAGAATGAGATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGAAG 125
Query 180 ACCGTCAATGGCACTTACCAATGGATTGTGAAGCCAAAGACTGTCAAATACGATTTCAAA 239
||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 126 ACCATCAATGGCAGTTACCAGTGGATTGTGAAGCCAAAGACTGTCAAATACGATTTCAAA 185
Query 240 ACCGATATTCGTGTCCCCAAATTAGGGGTTATGCTTGTGGGTTTGGGAGGAAACAATGGA 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 186 ACCGATATTCGTGTCCCCAAATTAGGGGTTATGCTTGTGGGTTGGGGAGGAAACAATGGA 245
Query 300 TCAACTCTCACCGCTGGTGTGATTGCGAACAAAGAAGGAATCTCGTGGGCAACGAAGGAC 359
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 246 TCAACTCTCACTGCTGGTGTCATTGCGAACAAAGAAGGAATCTCGTGGGCAACGAAGGAC 305
Query 360 AAAGTGCAACAAGCGAATTACTTCGGGTCACTAACTCAAGCTTCATCGATTCGTGTCGGA 419
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 306 AAAGTGCAACAAGCGAATTACTTTGGGTCACTAACTCAAGCATCATCGATTCGTGTCGGA 365
Query 420 TCTTTTAACGGTGAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTGAATCCG 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TCCTTTAACGGTGAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTGAATCCG 425
Query 480 GATGATGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GATGATGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCT 485
Query 540 AGAGCCAGGGTTCTTGATATCGACTTGCAGAAACAGCTCAGGCCTTACATGGAGAACATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 AGAGCCAGGGTTCTTGATATCGACTTGCAGAAACAGCTCAGGCCTTACATGGAGAACATT 545
Query 600 GTGCCACTCCCTGGGATCTTCGATCCTGATTTCATAGCTGCTAATCAAGGGTCACGTGCT 659
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 546 GTGCCACTCCCTGGGATCTACGATCCTGATTTCATCGCTGCTAATCAAGGGTCACGTGCT 605
Query 660 AACCACGTGATCAAAGGTACCAAGAAGGAACAAGTCGACCACATCATCAAGGACATGAGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AACCACGTGATCAAAGGTACCAAGAAGGAACAAGTCGACCACATCATCAAGGACATGAGG 665
Query 720 GAGTTTAAGGAGAAGAATAAGGTGGATAAGGTTGTGGTTCTCTGGACGGCTAACACAGAG 779
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 666 GAGTTTAAGGAGAAGAATCAGGTGGATAAGGTTGTGGTTCTCTGGACGGCTAACACTGAG 725
Query 780 CGTTATAGCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTCATGGAGTCTGTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CGTTATAGCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTCATGGAGTCTGTG 785
Query 840 GATAGGGATGAGGCTGAGATCTCTCCTTCAACACTTTATGCGATTGCTTGTGTTCTTGAG 899
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 786 GATAGAGATGAGGCTGAGATCTCTCCTTCTACGCTTTATGCGATTGCTTGTGTTCTTGAG 845
Query 900 GGAATCCCGTTCATCAATGGAAGCCCTCAAAACACCTTTGTTCCAGGTCTAATTGATATG 959
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 846 GGGATCCCGTTCATCAATGGAAGCCCTCAGAACACCTTTGTTCCAGGTCTAATTGATATG 905
Query 960 GCGATCAGGAACAATGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GCGATCAGGAACAATGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATG 965
Query 1020 AAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGCCTACTTCAATTGTGAGC 1079
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 966 AAATCTGTCTTGGTTGATTTCCTTGTTGGTGCAGGAATCAAGCCTACTTCAATTGTGAGC 1025
Query 1080 TACAATCACTTGGGAAACAACGATGGAATGAATCTCTCAGCTCCACAGACTTTCAGATCT 1139
|||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1026 TACAATCACTTGGGGAACAACGATGGGATGAACCTCTCAGCTCCACAGACATTCAGATCT 1085
Query 1140 AAGGAGATCTCCAAAAGCAATGTCGTGGACGATATGGTTGCTAGCAATGGTATCCTCTTT 1199
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1086 AAGGAGATCTCGAAAAGCAATGTTGTGGACGATATGGTTGCTAGCAACGGTATCCTCTTT 1145
Query 1200 GAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGTATGTACCGTATGTTGCGGAT 1259
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1146 GAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGTATGTACCCTATGTTGCGGAT 1205
Query 1260 AGTAAGCGAGCCATGGACGAGTACACATCAGAGATATTCATGGGAGGGAAGAACACAATT 1319
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1206 AGTAAGCGAGCGATGGACGAGTACACATCAGAGATCTTCATGGGAGGGAAGAACACAATT 1265
Query 1320 GTGATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCTTGGATCTTGTT 1379
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GTAATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCTTGGATCTTGTT 1325
Query 1380 CTCCTCGCGGAGCTCAGCACCAGGATCCAGTTCAAATCCGAGGGAGAGGGAAAGTTTCAC 1439
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1326 CTCCTCGCGGAGCTCAGCACCAGGATCCAGTTCAAATCTGAGGGAGAGGGAAAGTTTCAT 1385
Query 1440 TCTTTCCATCCTGTGGCCACCATACTCAGCTACCTCACCAAGGCACCACTTGTACCGCCG 1499
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1386 TCTTTCCATCCTGTGGCCACCATACTCAGCTACCTCACCAAGGCACCGCTTGTGCCGCCG 1445
Query 1500 GGAACTCCGGTGATTAACGCACTGTCGAAGCAGCGGGCTATGCTGGAGAATATTATGAGG 1559
||||| |||||| |||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1446 GGAACCCCGGTGGTTAATGCGCTGTCGAAGCAGCGGGCTATGCTGGAGAACATTATGAGG 1505
Query 1560 GCGTGCGTTGGACTGGCTCCGGAGAACAACATGATCATGGAATTCAAGTGAACATGAAGA 1619
|| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1506 GCATGCGTTGGGCTGGCTCCGGAGAACAACATGATCATGGAATTCAAGTGAACAGGAAGA 1565
Query 1620 AGCAT 1624
|||||
Sbjct 1566 AGCAT 1570
> Ahg932186 jgi|Araly1|932186|scaffold_400174.1
Length=1574
Score = 1687 bits (913), Expect = 0.0
Identities = 1350/1562 (86%), Gaps = 26/1562 (2%)
Strand=Plus/Plus
Query 72 AAAATGTTTATTGAGAGCTTCAAAGTTGAGAGCCCGAACGTGAAGTACACAGAGAATGAG 131
|||||||| || |||||||| ||||| |||||||| || || || |||||||||||||||
Sbjct 19 AAAATGTTCATCGAGAGCTTTAAAGTAGAGAGCCCAAATGTCAAATACACAGAGAATGAG 78
Query 132 ATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGAAGACCGTCAATGGC 191
||||| || |||||||||||||| || || ||||| || |||||| | | ||| || ||
Sbjct 79 ATTCATTCGGTGTACGATTACGAAACAACAGAGGTCGTCCATGAG-A-ATCGT-AACGGT 135
Query 192 ACTTACCAATGGATTGTGAAGCCAAAGACTGTCAAATACGATTTCAAAACCGATATTCGT 251
|| || ||||||||||||||||||||| |||||||||||||||||||||| || | ||||
Sbjct 136 ACATATCAATGGATTGTGAAGCCAAAGTCTGTCAAATACGATTTCAAAACAGACACTCGT 195
Query 252 GTCCCCAAATTAGGGGTTATGCTTGTGGGTTTGGGAGGAAACAATGGATCAACTCTCACC 311
|||||||||||||||||||||||||| |||| ||||||||||||||||||||| || |||
Sbjct 196 GTCCCCAAATTAGGGGTTATGCTTGTTGGTTGGGGAGGAAACAATGGATCAACACTAACC 255
Query 312 GCTGGTGTGATTGCGAACAAAGAAGGAATCTCGTGGGCAACGAAGGACAAAGTGCAACAA 371
|||||||| ||||| ||||||||||||||||||||||| || || |||||||||||||||
Sbjct 256 GCTGGTGTCATTGCTAACAAAGAAGGAATCTCGTGGGCGACTAAAGACAAAGTGCAACAA 315
Query 372 GCGAATTACTTCGGGTCACTAACTCAAGCTTCATCGATTCGTGTCGGATCTTTTAACGGT 431
|| |||||||| || ||||| ||||||||||| ||||||||||| || |||| || |||
Sbjct 316 GCTAATTACTTTGGTTCACTTACTCAAGCTTCTTCGATTCGTGTTGGTTCTTACAATGGT 375
Query 432 GAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTGAATCCGGATGATGTTGTG 491
|||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 376 GAAGAGATTTACGCTCCTTTCAAGAGTCTTCTTCCAATGGTGAATCCTGATGATGTTGTG 435
Query 492 TTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCTAGAGCCAGGGTT 551
||||| || |||||||||||||||||||||||||| ||||| ||||||||||| || |||
Sbjct 436 TTTGGTGGTTGGGATATAAGTGACATGAACTTAGCTGATGCTATGGCTAGAGCTAGAGTT 495
Query 552 CTTGATATCGACTTGCAGAAACAGCTCAGGCCTTACATGGAGAACATTG-TGCCACTCCC 610
||||| || || ||||||||||| || || ||||||||||||| || || | ||||| ||
Sbjct 496 CTTGACATTGATTTGCAGAAACAACTTAGACCTTACATGGAGACCA-TGATCCCACTTCC 554
Query 611 TGGGATCT-TCGATCCTGATTTCATAGCTGCTAATCAAGGGTCACGTGCTAACCA-CGTG 668
||| |||| | || ||||||||||| ||||| |||||||||||||||||||| | ||||
Sbjct 555 TGGAATCTAT-GACCCTGATTTCATTGCTGCGAATCAAGGGTCACGTGCTAA-TAGCGTG 612
Query 669 ATCAAAGGTACCAAGAAGGAACAAGTCGACCACATCATCAAGGACATGAGGGAGTTTAAG 728
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 613 ATCAAAGGTACCAAGAAGGAACAAGTTGATCACATCATCAAGGACATGAGGGAGTTTAAG 672
Query 729 GAGAAGAATAAGGTGGATAAGGTTG-TGGT-TCTCTGGACGGCTAACACAGAGCGTTATA 786
|||||||| || ||||||||| ||| | || | | ||||| || ||||||||||||||||
Sbjct 673 GAGAAGAACAAAGTGGATAAG-TTGGTTGTGT-TATGGACTGCAAACACAGAGCGTTATA 730
Query 787 GCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTCAT-GGAGTCTGTGGATAGG 845
|||||||| | || ||| | || ||||||||||||||||| || || ||||| || | |
Sbjct 731 GCAATGTGATTGTAGGGCTTAATGATACAATGGAGAATCT-ATTGGCTTCTGTTGAAAAG 789
Query 846 GATGAGGCTGAGATCTCTCCTTCAACACTT-TATGCGATTGCTTGTGTTCTTGAGGGAAT 904
|| ||| |||||||||| || || || || ||||| ||||||||||||||||| || ||
Sbjct 790 GACGAGTCTGAGATCTCGCCGTCTACT-TTGTATGCTATTGCTTGTGTTCTTGAAGGTAT 848
Query 905 CCCGTTCATCAATGGAAGCCCTCAAAACACCTTTGTTCCAGGTCTAATTGA-TATGGCGA 963
||| ||||||||||| || ||||| || || ||||| || ||||| || || | |||| |
Sbjct 849 CCCTTTCATCAATGGGAGTCCTCAGAATACTTTTGTCCCCGGTCTTATCGAGT-TGGCTA 907
Query 964 TCAG-GAACAAT-GTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATGAA 1021
| | ||| ||| |||| ||| |||||||||||||||||||||||||| || ||||||||
Sbjct 908 T-ATCGAAGAATTGTTT-GATTGGTGGAGATGATTTCAAGAGTGGTCAGACTAAGATGAA 965
Query 1022 ATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGCCTACTTCAATTGTGAGCTA 1081
||| || ||||| |||||||| ||||| || || |||||||||||||| |||||||||||
Sbjct 966 ATCCGTTTTGGTCGATTTCCTTGTTGGAGCTGGCATCAAGCCTACTTCGATTGTGAGCTA 1025
Query 1082 CAATCACTTGGGAAACAACGATGGAATGAATCTCTCAGCTCCACAGACTTTCAGATCTAA 1141
||||| |||||||| ||||| || ||||| |||||||| || ||||||||| | |||||
Sbjct 1026 TAATCATTTGGGAAATAACGACGGGATGAACCTCTCAGCGCCGCAGACTTTCCGCTCTAA 1085
Query 1142 GGAGATCTCCAAA-AGCAATGTCGTGGACGATATGGTTGCTAGCAATGGTATCCTCTTTG 1200
|||||| || ||| |||||||| || ||||| ||||| ||||| ||||| ||||||||||
Sbjct 1086 GGAGATTTC-AAAGAGCAATGTTGTAGACGACATGGTAGCTAGTAATGGCATCCTCTTTG 1144
Query 1201 AGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGTATGTACCGTATGTTGCGGATA 1260
|||| || |||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1145 AGCCCGGTGAACACCCTGACCATGTCGTTGTCATCAAGTATGTACCATATGTTGCGGATA 1204
Query 1261 GTAAGCGAGCCATGGACGAGTACACATCAGAGATATTCATGGGAGGGAAGAACACAATTG 1320
|||| |||| |||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 1205 GTAAAAGAGCAATGGACGAGTACACGTCTGAGATATTCATGGGAGGGAGGAACACAATTG 1264
Query 1321 TGATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCTTGGATCTTGTTC 1380
||||||| || || || |||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1265 TGATGCATAACACTTGTGAGGACTCACTCTTGGCTGCTCCAATTATCTTGGATCTTGTTC 1324
Query 1381 TCCTCGCGGAGCTCAGCACCAGGATCCAGTTCAAATCCGAGGGAGAGGGAAAGTTTCACT 1440
| ||||| || ||||||||||||||||| |||||| |||| |||||||| ||||||||||
Sbjct 1325 TTCTCGCTGAACTCAGCACCAGGATCCAATTCAAAGCCGAAGGAGAGGGGAAGTTTCACT 1384
Query 1441 CTTTCCATCCTGTGGCCACCATACTCAGCTACCTCACCAAGGCACCACTTGTACCGCCGG 1500
||||||| || || || ||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct 1385 CTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCTG 1444
Query 1501 GAACTCCGGTGATTAACGCACTGTCGAAGCAGCGGGCTATGCTGGAGAATATTATGAGGG 1560
|||| |||||| ||||||| ||||||||||||||||| |||||||| || ||| | ||||
Sbjct 1445 GAACACCGGTGGTTAACGCTCTGTCGAAGCAGCGGGCAATGCTGGAAAACATTCTTAGGG 1504
Query 1561 CGTGCGTTGGACTGGCTCCGGAGAACAACATGATCATGGAATTCAAGTGAAC-ATGAAGA 1619
| |||||||| || || || |||||||||||||||||||| | |||||||| |||| ||
Sbjct 1505 CCTGCGTTGGGCTTGCGCCAGAGAACAACATGATCATGGAGTACAAGTGAAGGATGAGGA 1564
Query 1620 AG 1621
||
Sbjct 1565 AG 1566
> Ahg487844 jgi|Araly1|487844|fgenesh2_kg.6__978__AT5G10170.1
Length=1818
Score = 1184 bits (641), Expect = 0.0
Identities = 1276/1579 (81%), Gaps = 58/1579 (4%)
Strand=Plus/Plus
Query 60 TTTTCC-TCTGCAAAAATGTTTATTGAGAGCTTCAAAGTTGAGAGC-CCGAACGTGAAGT 117
|||||| | ||||||||||| || || |||||||| ||||| | | |||||||||||||
Sbjct 52 TTTTCCTTAGGCAAAAATGTTCATCGAAAGCTTCAAGGTTGA-ATCTCCGAACGTGAAGT 110
Query 118 ACACAGAGAATGAGATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGA 177
|||| ||||||||||| || || |||||||| ||| | || || ||| |||||||||||
Sbjct 111 ACACCGAGAATGAGATCCATTCAGTGTACGACTACCAAACCACTGAGCTTGTTCATGAG- 169
Query 178 AGACCGTCAATGGCAC-TTACCAATGGATTGTGAAGCCAAAGACTGTCAAATACGA-TTT 235
| | | || || | || ||||||| |||||||||||| || || ||||| || |||
Sbjct 170 A-A-CAAAAACGGTGCGTT-TCAATGGACTGTGAAGCCAAAAACCGTGAAATATGAGTTT 226
Query 236 CAAAACCGATATTCGTGTCCCCAAA-TTAGGGGTTATGCTTGTGGGTTTGGGAGGAAACA 294
|| ||||| | || ||| || ||| || || || ||||| || |||| |||||| ||||
Sbjct 227 -AAGACCGACACTCATGTTCCAAAACTT-GGAGTAATGCTCGTTGGTTGGGGAGGCAACA 284
Query 295 ATGGATCAACTCTCACCGCTGGTGTGATTGCGAA-CAAAGAAGGAATCTCGTGGGCAACG 353
|||| || || || ||||||||||| || || || | || ||||| || ||||| |||
Sbjct 285 ATGGTTCTACGCTTACCGCTGGTGTTATCGCCAATC-GTGAGGGAATATCTTGGGCTACG 343
Query 354 AAGGACAAAGTGCAACAAGCGAATTACTTCGGGTCACTAACTCAAGCTTCATCGATTCGT 413
||||| |||||||| ||||| ||||| ||||||||| |||| ||||| || || |||||
Sbjct 344 AAGGAGAAAGTGCAGCAAGCTAATTATTTCGGGTCATTAACCCAAGCATCCTCTATTCGG 403
Query 414 GTCGGATCTTTTAACGGTGAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTG 473
||||| |||||||| |||||||| ||||||||||||||||| ||||| || || ||||||
Sbjct 404 GTCGGGTCTTTTAATGGTGAAGAAATCTATGCTCCTTTCAAAAGTCTTCTCCCCATGGTG 463
Query 474 AATCCGGATGATGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCC 533
||||| || || ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 464 AATCCTGAAGAAATTGTGTTTGGAGGATGGGACATAAGTGACATGAACTTAGCAGACGCA 523
Query 534 ATGGCTA-GAGCCAGGGTTCTTGATATCGA-CTTGCAGAAA-CAGCT-CAGGCC-TTACA 588
||||| | |||||| ||| || || ||||| ||| || ||| ||||| | | || || ||
Sbjct 524 ATGGC-ACGAGCCAAGGTCCTAGACATCGACCTT-CA-AAAGCAGCTGC-GTCCGTT-CA 578
Query 589 TGGAGAACATTGTGCCACTCCCTGGGATCTTCGATCCTGATTTCATAGCTGCTAATCAAG 648
||||| |||| || ||||||||||| || ||||| || |||||||| || ||||| || |
Sbjct 579 TGGAGCACATGGTCCCACTCCCTGGAATATTCGACCCAGATTTCATCGCAGCTAACCAGG 638
Query 649 GGTCACGTGCTAACCACGTGATCAAAGGTACCAAGAAGGAACAAGTCGACCACA-TCATC 707
|||| ||||| ||||||||||||||||| |||||||| ||||| |||| || | |||||
Sbjct 639 GGTCGCGTGCCAACCACGTGATCAAAGGCACCAAGAAACAACAACTCGAGCA-AGTCATC 697
Query 708 AAGGACATGAGGGAGTTTAAGGAGAAGAATAAGGTGGATAAGGTTGTGGTTCTCTGGACG 767
|||||||| |||||||| || ||||| || || |||||||| || ||||| || ||||||
Sbjct 698 AAGGACATCAGGGAGTTCAAAGAGAAAAACAAAGTGGATAAAGTGGTGGTACTGTGGACG 757
Query 768 GCTAACACAGAGCGTTATAGCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTC 827
|| |||||||| | || ||||||||||| ||||| | ||||| || | |||||||||
Sbjct 758 GCGAACACAGAAAGATACAGCAATGTGGTGGTTGGTCTTAACGACACGACGGAGAATCTA 817
Query 828 ATG-GAGTCTGTGGATAGGGATGAGGCTGAGATCTCTCCTTCAACACTTTATGCGATTGC 886
||| | ||| |||| | ||||||||||||||| |||||||| |||||||| || |||||
Sbjct 818 ATGTCA-TCTTTGGAAAAGGATGAGGCTGAGATTTCTCCTTCTACACTTTACGCCATTGC 876
Query 887 TTGTGTTCTTGAGGGAA--TCCCGTTCATCAATGGAAGCCCTCAAAACACCTTTGTTCCA 944
|||||||||||| ||| | || |||||||||||||| || |||||||| ||||| ||
Sbjct 877 TTGTGTTCTTGA--GAACGTTCCTTTCATCAATGGAAGTCCACAAAACACTTTTGTCCCT 934
Query 945 GGTCTAATTG-ATATGGCGA-TCAG-GAACAATGTTTTGATCGGTGGAGATGATTTCAAG 1001
|| || |||| || |||| | | || ||| | || ||||||||||| ||||| ||||||
Sbjct 935 GGGCTTATTGAAT-TGGCCATTGAGAGAA-ACTG-CTTGATCGGTGGTGATGACTTCAAG 991
Query 1002 AGTGGTCAAACCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAG 1061
|||||||| ||||||||||| |||||| | || |||||||| ||||| || ||||||||
Sbjct 992 AGTGGTCAGACCAAGATGAAGTCTGTCCTCGTCGATTTCCTTGTTGGTGCCGGAATCAAA 1051
Query 1062 CCTACTTCAATTGTGAGCTACAATCA-CTTGGGAAACAACGATGGAATGAATC-TCTCAG 1119
|| || || |||||||| ||||| || |||||| |||||||| || ||||| | | ||||
Sbjct 1052 CCGACGTCGATTGTGAGTTACAACCACCTTGGG-AACAACGACGGCATGAA-CTTGTCAG 1109
Query 1120 CTCCACAGACTTTCAGATCTAAGGAGATCTCCAAAAGCAATGTCGTGGACGATATGGTTG 1179
| || || || ||| | || |||||||| || || |||||||||||||||||||||||||
Sbjct 1110 CGCCGCAAACATTCCGGTCAAAGGAGATATCGAAGAGCAATGTCGTGGACGATATGGTTG 1169
Query 1180 CTAGCAATGGTATCCTCTTTGAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGT 1239
|||||| || || | | |||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 1170 GTAGCAACGGGATTTTGTACGAGCCTGGTGAACACCCTGACCACGTTGTGGTCATTAAGT 1229
Query 1240 ATGTACCGTATGTTGCG-GATAGTAAGCGAGCCATGGACGAGTACACATCAGAGATATTC 1298
|||| || ||||| | | ||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 1230 ATGTGCCATATGTAG-GAGATAGCAAGAGAGCAATGGACGAGTACACATCAGAGATATTC 1288
Query 1299 ATGGGAGGGAAGAACACAATTGTGATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCT 1358
||||||||||||||||| |||||||||||||| || || || ||||||||||| ||||||
Sbjct 1289 ATGGGAGGGAAGAACACGATTGTGATGCACAACACTTGTGAAGACTCTCTCTTGGCTGCT 1348
Query 1359 CCAATCATCTTGGATCTTGTTCTCCTCGCGGAGCTCAGC-AC-CAGGATCCAGTTCAAAT 1416
||||| || ||||| |||||||| || || ||||||| | || | ||||||||||||
Sbjct 1349 CCAATTATTTTGGACCTTGTTCTTCTTGCTGAGCTCA-CTACTC-GGATCCAGTTCATGG 1406
Query 1417 CCGAGGGAGAGGGAAAGTTTCACTCTTTCCATCCTGTGGC-CAC-CATACTCAGCTACCT 1474
|||| ||||||||||| || ||||||||||| ||||| | | | | || || |||||
Sbjct 1407 CCGAAACCGAGGGAAAGTTCCATTCTTTCCATCCGGTGGCTC-CTC-TCCTAAGTTACCT 1464
Query 1475 CACCAAGGCACCACTTGTACCGCCGGGAACTCCGGT-GATTAACGCACTGTCGAAGCAGC 1533
| | ||||||||||| || || || || || || || | | || || ||||||| ||||
Sbjct 1465 CTCAAAGGCACCACTGGTCCCTCCTGGCACGCCAGTTG-TGAATGCTTTGTCGAAACAGC 1523
Query 1534 GGGCTATGCTGGAGAATATTA-TGAGGGCGTGCGTTGGACTGGCTCCGGAGAACAACATG 1592
| || ||||| ||||| || | | || || || |||||||| ||||| ||||||||||||
Sbjct 1524 GTGCAATGCTTGAGAACAT-ACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAACAACATG 1582
Query 1593 AT-CATGGAATTCAAGTGA 1610
|| | | || | |||||||
Sbjct 1583 ATTC-TCGAGTACAAGTGA 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72181014275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5