BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39810.1

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888203 jgi|Araly1|888203|Al_scaffold_0007_189                    1031    0.0  


> Ahg888203 jgi|Araly1|888203|Al_scaffold_0007_189
Length=684

 Score = 1031 bits (558),  Expect = 0.0
 Identities = 636/675 (94%), Gaps = 0/675 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGTCCAAACATTTCCCAACGAAATCGTCTTCTTCGATCTAGAAACAAACGTACCA  60
            |||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||| 
Sbjct  1    ATGGAGGTCCAAACATTTCCCACCGAAATCGTCTTTTTCGATCTAGAAACAACCGTACCG  60

Query  61   AACAAAGCAGGGCAACATTTTCACATACTAGAGTTTGGGGCGATCATCGTATGTCCaaaa  120
            |||||||  |||||| ||||||||||  |||||||||| ||||||||||||||||||| |
Sbjct  61   AACAAAGTGGGGCAATATTTTCACATTTTAGAGTTTGGTGCGATCATCGTATGTCCAAGA  120

Query  121  aaaCTCGAGGAGCTAGAGAGCTTCACAACGCTTATACAACCTAAAGACTTGTCGGTGGTC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  AAACTCGAGGAGCTAGAGAGCTTCACAACGCTTATACAACCTAAAGACTTGTCAGTGGTC  180

Query  181  TCAATAAGGTCGTCTAGGTCAGATGGGATCACCAGGGCTAAGGTTACGAACGCACCAAGT  240
            |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct  181  TCAATAAGGTCGTCTAGGTCTGATGGGATCACAAGGGCTAAGGTTACAAACGCACCAAGT  240

Query  241  TTTGAAGACGTGGCTGAGAAAATCCATGGTTTGTTGAACGGTAGGATTTGGGCAGGTCAT  300
            |||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct  241  TTTGAAGATGTGGCTGAGAAGATCTATGGTTTGTTGAACGGTCGGATTTGGGCAGGTCAT  300

Query  301  AACATTAGAAGATTTGATTGCGTTAGGATCAAAGAAGCTTTCGCTGAGATCGGTAAAGCT  360
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  301  AACATTAGAAGATTCGATTGCATTAGGATCAAAGAAGCTTTCGCTGAGATCGGTAAAGCT  360

Query  361  GCGCCTGAACCCTCAGGGATCATTGATTCTTTGGGGTTATTAAGTGACAAGTTTGGCAAA  420
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GCCCCTGAACCCTCAGGGATCATTGATTCTTTGGGGTTATTAAGTGACAAGTTTGGCAAA  420

Query  421  AGAGCTGGTAACATGAAGATGGCAAGTTTGGCTGCCTATTTTGGTCTTGGAGTTCAAAAG  480
            |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct  421  AGAGCTGGTAACATGAAGATGGCAAGTTTGGCAGCGTATTTTGGTCTTGGAGTGCAAAAG  480

Query  481  CACAGGAGTCTCGATGATGTTCGAATGAATTTAGAGGTCCTCAAGCATTGTGCAACAGTG  540
            ||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||| 
Sbjct  481  CACAGGAGTCTCGATGATGTTAGAATGAACTTAGAGGTCCTCAAGCACTGCGCAACAGTT  540

Query  541  CTTTTCTTGGAATCTACACTTCCCAATCATTTGGAAGGAAAATGGCACACTTCTTCTAAG  600
            ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||
Sbjct  541  CTTTTCTTGGAATCTACACTTCCCAATCAATTGGAAGGAAAATGGCAAAGTTCTTCAAAG  600

Query  601  ATTATGACAAGAAGTCGAAGGAATTACCAAATAGCCCAAAGGGCAATGCCTTACTCGAAG  660
            || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  601  ATCATGACAAGAAGTCGAAGTAATTACCAAATAGCCCAAAGGGCAATGCCTTACTCAAAG  660

Query  661  GGTAGTCTCGAGAAG  675
            |||||||||| ||||
Sbjct  661  GGTAGTCTCGGGAAG  675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28325327331


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5