BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39830.1
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327935 jgi|Araly1|327935|fgenesh1_pm.C_scaffold_7000162 2750 0.0
> Ahg327935 jgi|Araly1|327935|fgenesh1_pm.C_scaffold_7000162
Length=1746
Score = 2750 bits (1489), Expect = 0.0
Identities = 1665/1751 (95%), Gaps = 7/1751 (0%)
Strand=Plus/Plus
Query 175 ATGATGAGACCGAAGAGATCATCAGACACAGTCCATGTCTTCAATCTTATGGTCCTCTGT 234
|||||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 1 ATGATGAGACAAAAGAGATCATTAGACACAATTCATGTCTTCAATCTTATGGTCCTCTGT 60
Query 235 TTCATTGCCCTGtttttttCTTCCGTCCTCT-GTCAGGGAAAGATCCGGAGATTCAAATG 293
||||| || ||||||| |||||||||||| | | |||||||||||||| |||||||||||
Sbjct 61 TTCATCGCTCTGTTTTCTTCTTCCGTCCT-TGGCCAGGGAAAGATCCGAAGATTCAAATG 119
Query 294 GGAAGTGAAGTACGAGTTCAAGTCACCGGATTGTTTCGAGAAGCTAGTAATCACAATCAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 GGAAGTGAAGTACGAGTTCAAGTCACCGGATTGTTTCGAGAAGCTAGTAATCACAGTCAA 179
Query 354 TGGTAAGTTTCCAGGTCCCACCATTAAAGCTCAACAAGGTGACACCATCGTTGTCGAGCT 413
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 180 TGGTAAGTTTCCAGGTCCCACCATTAAAGCTCAACAAGGTGACACCATTGTTGTTGAGCT 239
Query 414 CAAGAATAGCTTCATGACTGAAAATGTCGCTGTCCATTGGCATGGAATCCGACAGATTGG 473
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 240 CAAGAATAGCTTCATGACTGAAAACGTCGCTGTCCATTGGCATGGAATCCGACAGATTAG 299
Query 474 GACTCCATGGTTCGATGGAGTAGAAGGTGTTACTCAATGTCCAATTCTTCCTGGAGAAGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GACTCCATGGTTCGATGGAGTAGAAGGTGTTACTCAATGTCCAATTCTTCCTGGAGAAGT 359
Query 534 CTTCATTTACCAATTTGTCGTTGATAGGCCTGGTACATACATGTATCATTCACACTATGG 593
||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CTTCACTTACCAATTCGTCGTTGATAGACCTGGTACATACATGTATCATTCACACTATGG 419
Query 594 GATGCAGAGAGAGTCTGGATTAATCGGAATGATTCAAGTTTCTCCTCCGGCCACAGAGCC 653
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 GATGCAGAGAGAATCTGGATTAATCGGAATGATTCAAGTTTCTCCTCCGGTCACAGAGCC 479
Query 654 CGAACCGTTTACATACGATTATGACCGGAACT-TTTTGTTAACTGATTGGTATCACAAAA 712
|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 480 CGAACCGTTTACATACGATTATGACCGGAA-TGTTTTGTTAACAGATTGGTATCACAAAA 538
Query 713 GTATGTCAGAGAAAGCCACCGGTTTAGCATCCATACCCTTCAAGTGGGTCGGTGAGCCAC 772
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 GCATGTCAGAGAAAGCCACCGGTTTAGCATCAATACCCTTCAAGTGGGTCGGTGAGCCAC 598
Query 773 AATCGCTTATGATACAAGGAAGAGGAAGATTCAACTGCTCAAACAACCTAACCACTCCTC 832
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AATCGCTTTTGATACAAGGAAGAGGAAGATTCAACTGCTCAAACAACCTAACCACTCCTC 658
Query 833 CAAGCTTAGTGTCTGGAGTATGTAACGTCTCAAACGCTGATTGTTCGCGTTTTATTCTTA 892
||| |||||||||||| || ||||||||||||||||||||||| |||||||| |||||||
Sbjct 659 CAAACTTAGTGTCTGGCGTCTGTAACGTCTCAAACGCTGATTGCTCGCGTTTAATTCTTA 718
Query 893 CGGTGATTCCCGGAAAGACATACAGGCTTCGAATAGGTAGCTTGACGGCTCTCTCTGCTC 952
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TTGTGATTCCCGGAAAGACATACAGGCTTCGAATCGGTAGCTTGACGGCTCTCTCTGCTC 778
Query 953 TCAGTTTCCAAATCGAGGGACATAATTTGACAGTTGTTGAAGCAGACGGACACTACGTAG 1012
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 TCAGTTTCCAAATTGAGGGACATAATTTGACGGTTGTTGAAGCAGACGGACACTACGTAG 838
Query 1013 AACCATTCACGGTGAAGAATCTCTTTGTATACTCCGGCGAAACTTATTCCGTACTTCTCA 1072
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 839 AACCATTCACGGTGAAGAATCTCTTCATATACTCTGGCGAAACTTATTCCGTACTTCTCA 898
Query 1073 AGGCAGATCAAAACCCTCGACGAAACTATTGGATCACCTCAAGCATAGTTAGCCGTCCGG 1132
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 AGGCAGATCAAAACCCTAGACGAAACTATTGGATCACCACAAGCATAGTTAGCCGTCCGG 958
Query 1133 CGACAACTCCACCGGCAACCGCTGTACTCAACTACTACCCGAACCACCCACGACGGCGTC 1192
| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 959 CAACAACTCCACCGG---TCGCCGTACTCAACTACTACCCGAATCACCCACGACGGCGTC 1015
Query 1193 CTCCCACGTCGGAATCATCCAATATCGTACCGGAATGGAACGACACGCGCTCCCGTCTTG 1252
|||||||| ||||||| || ||| || |||||||||||||||||||||||||||||||||
Sbjct 1016 CTCCCACGCCGGAATCCTCTAATCTCCTACCGGAATGGAACGACACGCGCTCCCGTCTTG 1075
Query 1253 CACAAAGCCTAGCAATCAAGGCGCGTCGAGGATTCATTCACGCGCTGCCGGAGAATTCTG 1312
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1076 CACAAAGCCTAGCAATCAAGGCGCGTCGAGGATTCATTCACGCGCCGCCGGAGAATTCTG 1135
Query 1313 ACAAAGTCATTGTGCTTCTGAATACACAAAACGAAGTCAACGGATACAGACGTTGGTCGG 1372
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1136 ACAAAGTCATTGTGCTTCTGAATACACAAAACGAAGTCAACGGGTACAGACGTTGGTCGG 1195
Query 1373 TCAACAACGTTTCCTATCACCACCCTAAAACGCCGTACCTAATCGCGTTAAAGCAAAACC 1432
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1196 TCAACAACGTTTCCTATCACCACCCTAAAACACCGTACCTAATCGCATTAAAGCAGAACC 1255
Query 1433 TCACAAACGCGTTTGACTGGCGTTTCACGGCACCGGAGAACTACGATTCTCGAAATTACG 1492
||||||||||||| ||||||||||||||| | |||||||| |||||||| || |||||||
Sbjct 1256 TCACAAACGCGTTCGACTGGCGTTTCACGCCGCCGGAGAATTACGATTCACGGAATTACG 1315
Query 1493 ACATATTCGCGAAACCCCTTAACGCTAACGCGACGACGAGCGATGGAATCTACAGATTGA 1552
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1316 ACATATTCGCGAAACCCCTTAACGCTAACGCGACGACTAGCGATGGAATCTACAGATTGA 1375
Query 1553 GATTCAATTCAACCGTGGACGTGATTTTACAAAACGCGAATACAATGAACGCAAACAACA 1612
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 1376 GATTCAATTCAACCGTGGACGTGATTTTACAAAACGCGAATACGATGAACCCTAACAACA 1435
Query 1613 GTGAAACGCACCCGTGGCATTTACACGGTCATGATTTTTGGGTGCTTGGGTACGGAGAAG 1672
| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1436 GCGAAACGCACCCGTGGCATTTACACGGTCATGATTTTTGGGTACTAGGGTATGGAGAAG 1495
Query 1673 GAAAGTTTAATGAGTCGGAGGATCCGAAAAGGTATAACCGGGTCGACCCGATAAAGAAAA 1732
| |||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1496 GGAAGTTTAACGAGTCAGAGGATCCGAAAAGGTATAATCGGGTCGACCCGATAATGAAAA 1555
Query 1733 ACACGGTTGCGGTTCAACCGTTTGGCTGGACGGCGTTGCGTTTTAGAGCGGATAATCCTG 1792
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1556 ACACGGTTGCGGTTCAACCGTTTGGCTGGACGGCTTTGCGTTTCAGAGCGGATAATCCTG 1615
Query 1793 GCGTTTGGTCGTTTCACTGCCACATTGAATCGCATTTTTTCATGGGAATGGGGATTGTGT 1852
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1616 GCGTTTGGTCGTTTCACTGTCACATTGAGTCGCATTTTTTCATGGGAATGGGGATTGTGT 1675
Query 1853 TCGAGTCTGGGATTGATAAGGTTTCTAGTTTACCTTCTTCTATAATGGGATGTGGTCAGA 1912
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1676 TCGAGTCTGGGATTGATAAGGTTTCTAATTTACCTTCTTCTATCATGGGATGTGGTCAGA 1735
Query 1913 CTAAACGCTGA 1923
||||||| |||
Sbjct 1736 CTAAACGATGA 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78313543720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5